data_6YH4
#
_model_server_result.job_id            pcWz_NDdo4J7AB3eoqXGcw 
_model_server_result.datetime_utc      '2024-10-19 05:29:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6YH4 
#
_exptl.entry_id    6YH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.02 
_cell.angle_gamma         90 
_cell.entry_id            6YH4 
_cell.length_a            41.98 
_cell.length_b            40.995 
_cell.length_c            71.374 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N10 V13 . A V13 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C N10 V13 . A V13 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C S7 V13 . A V13 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.974 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     6YH4 
_atom_sites.fract_transf_matrix[1][1]    0.023821 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005948 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024393 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 3 V13 A 1 302 301 V13 V13 . 
D 4 DMS A 1 303 1 DMS DMS . 
E 5 HOH A 1 401 25 HOH HOH . 
E 5 HOH A 2 402 58 HOH HOH . 
E 5 HOH A 3 403 90 HOH HOH . 
E 5 HOH A 4 404 39 HOH HOH . 
E 5 HOH A 5 405 134 HOH HOH . 
E 5 HOH A 6 406 99 HOH HOH . 
E 5 HOH A 7 407 207 HOH HOH . 
E 5 HOH A 8 408 150 HOH HOH . 
E 5 HOH A 9 409 101 HOH HOH . 
E 5 HOH A 10 410 115 HOH HOH . 
E 5 HOH A 11 411 76 HOH HOH . 
E 5 HOH A 12 412 145 HOH HOH . 
E 5 HOH A 13 413 89 HOH HOH . 
E 5 HOH A 14 414 178 HOH HOH . 
E 5 HOH A 15 415 142 HOH HOH . 
E 5 HOH A 16 416 108 HOH HOH . 
E 5 HOH A 17 417 75 HOH HOH . 
E 5 HOH A 18 418 120 HOH HOH . 
E 5 HOH A 19 419 153 HOH HOH . 
E 5 HOH A 20 420 34 HOH HOH . 
E 5 HOH A 21 421 5 HOH HOH . 
E 5 HOH A 22 422 27 HOH HOH . 
E 5 HOH A 23 423 93 HOH HOH . 
E 5 HOH A 24 424 54 HOH HOH . 
E 5 HOH A 25 425 59 HOH HOH . 
E 5 HOH A 26 426 194 HOH HOH . 
E 5 HOH A 27 427 109 HOH HOH . 
E 5 HOH A 28 428 225 HOH HOH . 
E 5 HOH A 29 429 60 HOH HOH . 
E 5 HOH A 30 430 45 HOH HOH . 
E 5 HOH A 31 431 68 HOH HOH . 
E 5 HOH A 32 432 139 HOH HOH . 
E 5 HOH A 33 433 8 HOH HOH . 
E 5 HOH A 34 434 9 HOH HOH . 
E 5 HOH A 35 435 169 HOH HOH . 
E 5 HOH A 36 436 40 HOH HOH . 
E 5 HOH A 37 437 131 HOH HOH . 
E 5 HOH A 38 438 10 HOH HOH . 
E 5 HOH A 39 439 44 HOH HOH . 
E 5 HOH A 40 440 46 HOH HOH . 
E 5 HOH A 41 441 151 HOH HOH . 
E 5 HOH A 42 442 136 HOH HOH . 
E 5 HOH A 43 443 176 HOH HOH . 
E 5 HOH A 44 444 147 HOH HOH . 
E 5 HOH A 45 445 2 HOH HOH . 
E 5 HOH A 46 446 36 HOH HOH . 
E 5 HOH A 47 447 92 HOH HOH . 
E 5 HOH A 48 448 164 HOH HOH . 
E 5 HOH A 49 449 168 HOH HOH . 
E 5 HOH A 50 450 124 HOH HOH . 
E 5 HOH A 51 451 138 HOH HOH . 
E 5 HOH A 52 452 7 HOH HOH . 
E 5 HOH A 53 453 77 HOH HOH . 
E 5 HOH A 54 454 128 HOH HOH . 
E 5 HOH A 55 455 74 HOH HOH . 
E 5 HOH A 56 456 55 HOH HOH . 
E 5 HOH A 57 457 42 HOH HOH . 
E 5 HOH A 58 458 214 HOH HOH . 
E 5 HOH A 59 459 220 HOH HOH . 
E 5 HOH A 60 460 121 HOH HOH . 
E 5 HOH A 61 461 32 HOH HOH . 
E 5 HOH A 62 462 61 HOH HOH . 
E 5 HOH A 63 463 184 HOH HOH . 
E 5 HOH A 64 464 125 HOH HOH . 
E 5 HOH A 65 465 70 HOH HOH . 
E 5 HOH A 66 466 18 HOH HOH . 
E 5 HOH A 67 467 29 HOH HOH . 
E 5 HOH A 68 468 57 HOH HOH . 
E 5 HOH A 69 469 98 HOH HOH . 
E 5 HOH A 70 470 17 HOH HOH . 
E 5 HOH A 71 471 13 HOH HOH . 
E 5 HOH A 72 472 47 HOH HOH . 
E 5 HOH A 73 473 88 HOH HOH . 
E 5 HOH A 74 474 3 HOH HOH . 
E 5 HOH A 75 475 135 HOH HOH . 
E 5 HOH A 76 476 193 HOH HOH . 
E 5 HOH A 77 477 38 HOH HOH . 
E 5 HOH A 78 478 173 HOH HOH . 
E 5 HOH A 79 479 83 HOH HOH . 
E 5 HOH A 80 480 112 HOH HOH . 
E 5 HOH A 81 481 123 HOH HOH . 
E 5 HOH A 82 482 37 HOH HOH . 
E 5 HOH A 83 483 14 HOH HOH . 
E 5 HOH A 84 484 1 HOH HOH . 
E 5 HOH A 85 485 231 HOH HOH . 
E 5 HOH A 86 486 52 HOH HOH . 
E 5 HOH A 87 487 165 HOH HOH . 
E 5 HOH A 88 488 105 HOH HOH . 
E 5 HOH A 89 489 219 HOH HOH . 
E 5 HOH A 90 490 11 HOH HOH . 
E 5 HOH A 91 491 209 HOH HOH . 
E 5 HOH A 92 492 156 HOH HOH . 
E 5 HOH A 93 493 20 HOH HOH . 
E 5 HOH A 94 494 78 HOH HOH . 
E 5 HOH A 95 495 127 HOH HOH . 
E 5 HOH A 96 496 63 HOH HOH . 
E 5 HOH A 97 497 104 HOH HOH . 
E 5 HOH A 98 498 12 HOH HOH . 
E 5 HOH A 99 499 80 HOH HOH . 
E 5 HOH A 100 500 4 HOH HOH . 
E 5 HOH A 101 501 43 HOH HOH . 
E 5 HOH A 102 502 195 HOH HOH . 
E 5 HOH A 103 503 226 HOH HOH . 
E 5 HOH A 104 504 19 HOH HOH . 
E 5 HOH A 105 505 28 HOH HOH . 
E 5 HOH A 106 506 84 HOH HOH . 
E 5 HOH A 107 507 129 HOH HOH . 
E 5 HOH A 108 508 23 HOH HOH . 
E 5 HOH A 109 509 15 HOH HOH . 
E 5 HOH A 110 510 206 HOH HOH . 
E 5 HOH A 111 511 31 HOH HOH . 
E 5 HOH A 112 512 24 HOH HOH . 
E 5 HOH A 113 513 163 HOH HOH . 
E 5 HOH A 114 514 16 HOH HOH . 
E 5 HOH A 115 515 96 HOH HOH . 
E 5 HOH A 116 516 182 HOH HOH . 
E 5 HOH A 117 517 216 HOH HOH . 
E 5 HOH A 118 518 230 HOH HOH . 
E 5 HOH A 119 519 130 HOH HOH . 
E 5 HOH A 120 520 190 HOH HOH . 
E 5 HOH A 121 521 100 HOH HOH . 
E 5 HOH A 122 522 171 HOH HOH . 
E 5 HOH A 123 523 33 HOH HOH . 
E 5 HOH A 124 524 198 HOH HOH . 
E 5 HOH A 125 525 200 HOH HOH . 
E 5 HOH A 126 526 114 HOH HOH . 
E 5 HOH A 127 527 81 HOH HOH . 
E 5 HOH A 128 528 160 HOH HOH . 
E 5 HOH A 129 529 177 HOH HOH . 
E 5 HOH A 130 530 51 HOH HOH . 
E 5 HOH A 131 531 141 HOH HOH . 
E 5 HOH A 132 532 126 HOH HOH . 
E 5 HOH A 133 533 133 HOH HOH . 
E 5 HOH A 134 534 140 HOH HOH . 
E 5 HOH A 135 535 22 HOH HOH . 
E 5 HOH A 136 536 26 HOH HOH . 
E 5 HOH A 137 537 86 HOH HOH . 
E 5 HOH A 138 538 73 HOH HOH . 
E 5 HOH A 139 539 187 HOH HOH . 
E 5 HOH A 140 540 62 HOH HOH . 
E 5 HOH A 141 541 122 HOH HOH . 
E 5 HOH A 142 542 152 HOH HOH . 
E 5 HOH A 143 543 227 HOH HOH . 
E 5 HOH A 144 544 197 HOH HOH . 
E 5 HOH A 145 545 35 HOH HOH . 
E 5 HOH A 146 546 229 HOH HOH . 
E 5 HOH A 147 547 185 HOH HOH . 
E 5 HOH A 148 548 94 HOH HOH . 
E 5 HOH A 149 549 144 HOH HOH . 
E 5 HOH A 150 550 56 HOH HOH . 
E 5 HOH A 151 551 208 HOH HOH . 
E 5 HOH A 152 552 91 HOH HOH . 
E 5 HOH A 153 553 66 HOH HOH . 
E 5 HOH A 154 554 72 HOH HOH . 
E 5 HOH A 155 555 107 HOH HOH . 
E 5 HOH A 156 556 102 HOH HOH . 
E 5 HOH A 157 557 137 HOH HOH . 
E 5 HOH A 158 558 179 HOH HOH . 
E 5 HOH A 159 559 217 HOH HOH . 
E 5 HOH A 160 560 48 HOH HOH . 
E 5 HOH A 161 561 50 HOH HOH . 
E 5 HOH A 162 562 95 HOH HOH . 
E 5 HOH A 163 563 30 HOH HOH . 
E 5 HOH A 164 564 6 HOH HOH . 
E 5 HOH A 165 565 21 HOH HOH . 
E 5 HOH A 166 566 103 HOH HOH . 
E 5 HOH A 167 567 41 HOH HOH . 
E 5 HOH A 168 568 157 HOH HOH . 
E 5 HOH A 169 569 170 HOH HOH . 
E 5 HOH A 170 570 143 HOH HOH . 
E 5 HOH A 171 571 202 HOH HOH . 
E 5 HOH A 172 572 175 HOH HOH . 
E 5 HOH A 173 573 199 HOH HOH . 
E 5 HOH A 174 574 113 HOH HOH . 
E 5 HOH A 175 575 174 HOH HOH . 
E 5 HOH A 176 576 158 HOH HOH . 
E 5 HOH A 177 577 203 HOH HOH . 
E 5 HOH A 178 578 79 HOH HOH . 
E 5 HOH A 179 579 189 HOH HOH . 
E 5 HOH A 180 580 212 HOH HOH . 
E 5 HOH A 181 581 183 HOH HOH . 
E 5 HOH A 182 582 146 HOH HOH . 
E 5 HOH A 183 583 119 HOH HOH . 
E 5 HOH A 184 584 186 HOH HOH . 
E 5 HOH A 185 585 49 HOH HOH . 
E 5 HOH A 186 586 82 HOH HOH . 
E 5 HOH A 187 587 155 HOH HOH . 
E 5 HOH A 188 588 181 HOH HOH . 
E 5 HOH A 189 589 223 HOH HOH . 
E 5 HOH A 190 590 64 HOH HOH . 
E 5 HOH A 191 591 188 HOH HOH . 
E 5 HOH A 192 592 204 HOH HOH . 
E 5 HOH A 193 593 180 HOH HOH . 
E 5 HOH A 194 594 161 HOH HOH . 
E 5 HOH A 195 595 166 HOH HOH . 
E 5 HOH A 196 596 228 HOH HOH . 
E 5 HOH A 197 597 210 HOH HOH . 
E 5 HOH A 198 598 97 HOH HOH . 
E 5 HOH A 199 599 205 HOH HOH . 
E 5 HOH A 200 600 159 HOH HOH . 
E 5 HOH A 201 601 154 HOH HOH . 
E 5 HOH A 202 602 221 HOH HOH . 
E 5 HOH A 203 603 222 HOH HOH . 
E 5 HOH A 204 604 67 HOH HOH . 
E 5 HOH A 205 605 71 HOH HOH . 
E 5 HOH A 206 606 85 HOH HOH . 
E 5 HOH A 207 607 87 HOH HOH . 
E 5 HOH A 208 608 211 HOH HOH . 
E 5 HOH A 209 609 201 HOH HOH . 
E 5 HOH A 210 610 192 HOH HOH . 
E 5 HOH A 211 611 162 HOH HOH . 
E 5 HOH A 212 612 149 HOH HOH . 
E 5 HOH A 213 613 191 HOH HOH . 
E 5 HOH A 214 614 118 HOH HOH . 
E 5 HOH A 215 615 172 HOH HOH . 
E 5 HOH A 216 616 65 HOH HOH . 
E 5 HOH A 217 617 132 HOH HOH . 
E 5 HOH A 218 618 213 HOH HOH . 
E 5 HOH A 219 619 196 HOH HOH . 
E 5 HOH A 220 620 224 HOH HOH . 
E 5 HOH A 221 621 215 HOH HOH . 
E 5 HOH A 222 622 111 HOH HOH . 
E 5 HOH A 223 623 148 HOH HOH . 
E 5 HOH A 224 624 53 HOH HOH . 
E 5 HOH A 225 625 106 HOH HOH . 
E 5 HOH A 226 626 110 HOH HOH . 
E 5 HOH A 227 627 167 HOH HOH . 
E 5 HOH A 228 628 69 HOH HOH . 
E 5 HOH A 229 629 117 HOH HOH . 
E 5 HOH A 230 630 218 HOH HOH . 
E 5 HOH A 231 631 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 4 1.569 -11.748 14.977 1 25.09 ? S DMS 303 A 1 
HETATM 2 O O DMS . . . D 4 2.159 -13.137 14.524 1 33.87 ? O DMS 303 A 1 
HETATM 3 C C1 DMS . . . D 4 2.793 -10.581 14.552 1 29.16 ? C1 DMS 303 A 1 
HETATM 4 C C2 DMS . . . D 4 1.856 -11.656 16.716 1 21.52 ? C2 DMS 303 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#