data_6YIF # _model_server_result.job_id J1xW8IWOESnBsGeOQ4LdLw _model_server_result.datetime_utc '2024-11-04 20:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 6YIF # _exptl.entry_id 6YIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YIF _cell.length_a 98.863 _cell.length_b 98.863 _cell.length_c 56.067 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C ARG 2 D ARG 2 1_555 D N TPO 3 D TPO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 D C TPO 3 D TPO 3 1_555 D N LYS 4 D LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 59 A CYS 57 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A SG CYS 62 A CYS 60 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A NE2 HIS 79 A HIS 77 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 A SG CYS 86 A CYS 84 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 6YIF _atom_sites.fract_transf_matrix[1][1] 0.010115 _atom_sites.fract_transf_matrix[1][2] 0.00584 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 201 1 ZN ZN . F 6 SO4 A 1 202 8 SO4 SO4 . G 6 SO4 B 1 101 3 SO4 SO4 . H 6 SO4 B 1 102 7 SO4 SO4 . I 7 HOH A 1 301 275 HOH HOH . I 7 HOH A 2 302 162 HOH HOH . I 7 HOH A 3 303 134 HOH HOH . I 7 HOH A 4 304 284 HOH HOH . I 7 HOH A 5 305 174 HOH HOH . I 7 HOH A 6 306 91 HOH HOH . I 7 HOH A 7 307 166 HOH HOH . I 7 HOH A 8 308 188 HOH HOH . I 7 HOH A 9 309 94 HOH HOH . I 7 HOH A 10 310 278 HOH HOH . I 7 HOH A 11 311 129 HOH HOH . I 7 HOH A 12 312 164 HOH HOH . I 7 HOH A 13 313 152 HOH HOH . I 7 HOH A 14 314 53 HOH HOH . I 7 HOH A 15 315 71 HOH HOH . I 7 HOH A 16 316 252 HOH HOH . I 7 HOH A 17 317 208 HOH HOH . I 7 HOH A 18 318 111 HOH HOH . I 7 HOH A 19 319 85 HOH HOH . I 7 HOH A 20 320 287 HOH HOH . I 7 HOH A 21 321 115 HOH HOH . I 7 HOH A 22 322 193 HOH HOH . I 7 HOH A 23 323 236 HOH HOH . I 7 HOH A 24 324 147 HOH HOH . I 7 HOH A 25 325 186 HOH HOH . I 7 HOH A 26 326 76 HOH HOH . I 7 HOH A 27 327 56 HOH HOH . I 7 HOH A 28 328 312 HOH HOH . I 7 HOH A 29 329 219 HOH HOH . I 7 HOH A 30 330 70 HOH HOH . I 7 HOH A 31 331 106 HOH HOH . I 7 HOH A 32 332 73 HOH HOH . I 7 HOH A 33 333 161 HOH HOH . I 7 HOH A 34 334 52 HOH HOH . I 7 HOH A 35 335 54 HOH HOH . I 7 HOH A 36 336 20 HOH HOH . I 7 HOH A 37 337 69 HOH HOH . I 7 HOH A 38 338 179 HOH HOH . I 7 HOH A 39 339 128 HOH HOH . I 7 HOH A 40 340 51 HOH HOH . I 7 HOH A 41 341 18 HOH HOH . I 7 HOH A 42 342 125 HOH HOH . I 7 HOH A 43 343 281 HOH HOH . I 7 HOH A 44 344 160 HOH HOH . I 7 HOH A 45 345 127 HOH HOH . I 7 HOH A 46 346 45 HOH HOH . I 7 HOH A 47 347 123 HOH HOH . I 7 HOH A 48 348 248 HOH HOH . I 7 HOH A 49 349 197 HOH HOH . I 7 HOH A 50 350 306 HOH HOH . I 7 HOH A 51 351 93 HOH HOH . I 7 HOH A 52 352 267 HOH HOH . I 7 HOH A 53 353 274 HOH HOH . I 7 HOH A 54 354 28 HOH HOH . I 7 HOH A 55 355 86 HOH HOH . I 7 HOH A 56 356 46 HOH HOH . I 7 HOH A 57 357 35 HOH HOH . I 7 HOH A 58 358 61 HOH HOH . I 7 HOH A 59 359 26 HOH HOH . I 7 HOH A 60 360 210 HOH HOH . I 7 HOH A 61 361 11 HOH HOH . I 7 HOH A 62 362 31 HOH HOH . I 7 HOH A 63 363 138 HOH HOH . I 7 HOH A 64 364 66 HOH HOH . I 7 HOH A 65 365 39 HOH HOH . I 7 HOH A 66 366 260 HOH HOH . I 7 HOH A 67 367 228 HOH HOH . I 7 HOH A 68 368 199 HOH HOH . I 7 HOH A 69 369 153 HOH HOH . I 7 HOH A 70 370 57 HOH HOH . I 7 HOH A 71 371 90 HOH HOH . I 7 HOH A 72 372 158 HOH HOH . I 7 HOH A 73 373 204 HOH HOH . I 7 HOH A 74 374 145 HOH HOH . I 7 HOH A 75 375 250 HOH HOH . I 7 HOH A 76 376 286 HOH HOH . I 7 HOH A 77 377 257 HOH HOH . I 7 HOH A 78 378 41 HOH HOH . I 7 HOH A 79 379 168 HOH HOH . I 7 HOH A 80 380 283 HOH HOH . I 7 HOH A 81 381 151 HOH HOH . I 7 HOH A 82 382 220 HOH HOH . I 7 HOH A 83 383 258 HOH HOH . I 7 HOH A 84 384 184 HOH HOH . I 7 HOH A 85 385 132 HOH HOH . I 7 HOH A 86 386 229 HOH HOH . I 7 HOH A 87 387 205 HOH HOH . I 7 HOH A 88 388 304 HOH HOH . I 7 HOH A 89 389 109 HOH HOH . I 7 HOH A 90 390 198 HOH HOH . I 7 HOH A 91 391 261 HOH HOH . I 7 HOH A 92 392 107 HOH HOH . I 7 HOH A 93 393 89 HOH HOH . I 7 HOH A 94 394 276 HOH HOH . I 7 HOH A 95 395 150 HOH HOH . I 7 HOH A 96 396 270 HOH HOH . I 7 HOH A 97 397 212 HOH HOH . I 7 HOH A 98 398 176 HOH HOH . I 7 HOH A 99 399 47 HOH HOH . I 7 HOH A 100 400 231 HOH HOH . I 7 HOH A 101 401 203 HOH HOH . I 7 HOH A 102 402 271 HOH HOH . I 7 HOH A 103 403 266 HOH HOH . I 7 HOH A 104 404 7 HOH HOH . I 7 HOH A 105 405 43 HOH HOH . I 7 HOH A 106 406 303 HOH HOH . I 7 HOH A 107 407 293 HOH HOH . I 7 HOH A 108 408 77 HOH HOH . I 7 HOH A 109 409 102 HOH HOH . I 7 HOH A 110 410 305 HOH HOH . I 7 HOH A 111 411 307 HOH HOH . I 7 HOH A 112 412 64 HOH HOH . I 7 HOH A 113 413 213 HOH HOH . I 7 HOH A 114 414 225 HOH HOH . I 7 HOH A 115 415 282 HOH HOH . I 7 HOH A 116 416 285 HOH HOH . J 7 HOH B 1 201 23 HOH HOH . J 7 HOH B 2 202 273 HOH HOH . J 7 HOH B 3 203 108 HOH HOH . J 7 HOH B 4 204 157 HOH HOH . J 7 HOH B 5 205 32 HOH HOH . J 7 HOH B 6 206 13 HOH HOH . J 7 HOH B 7 207 117 HOH HOH . J 7 HOH B 8 208 121 HOH HOH . J 7 HOH B 9 209 40 HOH HOH . J 7 HOH B 10 210 131 HOH HOH . J 7 HOH B 11 211 12 HOH HOH . J 7 HOH B 12 212 124 HOH HOH . J 7 HOH B 13 213 112 HOH HOH . J 7 HOH B 14 214 17 HOH HOH . J 7 HOH B 15 215 37 HOH HOH . J 7 HOH B 16 216 96 HOH HOH . J 7 HOH B 17 217 1 HOH HOH . J 7 HOH B 18 218 63 HOH HOH . J 7 HOH B 19 219 183 HOH HOH . J 7 HOH B 20 220 59 HOH HOH . J 7 HOH B 21 221 4 HOH HOH . J 7 HOH B 22 222 24 HOH HOH . J 7 HOH B 23 223 48 HOH HOH . J 7 HOH B 24 224 238 HOH HOH . J 7 HOH B 25 225 310 HOH HOH . J 7 HOH B 26 226 9 HOH HOH . J 7 HOH B 27 227 175 HOH HOH . J 7 HOH B 28 228 272 HOH HOH . J 7 HOH B 29 229 290 HOH HOH . J 7 HOH B 30 230 2 HOH HOH . J 7 HOH B 31 231 21 HOH HOH . J 7 HOH B 32 232 139 HOH HOH . J 7 HOH B 33 233 218 HOH HOH . J 7 HOH B 34 234 5 HOH HOH . J 7 HOH B 35 235 58 HOH HOH . J 7 HOH B 36 236 149 HOH HOH . J 7 HOH B 37 237 30 HOH HOH . J 7 HOH B 38 238 14 HOH HOH . J 7 HOH B 39 239 38 HOH HOH . J 7 HOH B 40 240 146 HOH HOH . J 7 HOH B 41 241 3 HOH HOH . J 7 HOH B 42 242 75 HOH HOH . J 7 HOH B 43 243 15 HOH HOH . J 7 HOH B 44 244 25 HOH HOH . J 7 HOH B 45 245 189 HOH HOH . J 7 HOH B 46 246 80 HOH HOH . J 7 HOH B 47 247 136 HOH HOH . J 7 HOH B 48 248 301 HOH HOH . J 7 HOH B 49 249 84 HOH HOH . J 7 HOH B 50 250 143 HOH HOH . J 7 HOH B 51 251 217 HOH HOH . J 7 HOH B 52 252 62 HOH HOH . J 7 HOH B 53 253 130 HOH HOH . J 7 HOH B 54 254 178 HOH HOH . J 7 HOH B 55 255 148 HOH HOH . J 7 HOH B 56 256 292 HOH HOH . J 7 HOH B 57 257 19 HOH HOH . J 7 HOH B 58 258 291 HOH HOH . J 7 HOH B 59 259 289 HOH HOH . J 7 HOH B 60 260 120 HOH HOH . J 7 HOH B 61 261 209 HOH HOH . J 7 HOH B 62 262 227 HOH HOH . J 7 HOH B 63 263 170 HOH HOH . J 7 HOH B 64 264 233 HOH HOH . J 7 HOH B 65 265 67 HOH HOH . J 7 HOH B 66 266 119 HOH HOH . J 7 HOH B 67 267 232 HOH HOH . J 7 HOH B 68 268 6 HOH HOH . J 7 HOH B 69 269 22 HOH HOH . J 7 HOH B 70 270 44 HOH HOH . J 7 HOH B 71 271 83 HOH HOH . J 7 HOH B 72 272 226 HOH HOH . J 7 HOH B 73 273 263 HOH HOH . J 7 HOH B 74 274 202 HOH HOH . K 7 HOH C 1 101 97 HOH HOH . K 7 HOH C 2 102 34 HOH HOH . K 7 HOH C 3 103 72 HOH HOH . K 7 HOH C 4 104 103 HOH HOH . K 7 HOH C 5 105 241 HOH HOH . K 7 HOH C 6 106 8 HOH HOH . K 7 HOH C 7 107 92 HOH HOH . K 7 HOH C 8 108 171 HOH HOH . K 7 HOH C 9 109 55 HOH HOH . K 7 HOH C 10 110 169 HOH HOH . K 7 HOH C 11 111 299 HOH HOH . K 7 HOH C 12 112 60 HOH HOH . K 7 HOH C 13 113 173 HOH HOH . K 7 HOH C 14 114 126 HOH HOH . K 7 HOH C 15 115 308 HOH HOH . K 7 HOH C 16 116 29 HOH HOH . K 7 HOH C 17 117 50 HOH HOH . K 7 HOH C 18 118 116 HOH HOH . K 7 HOH C 19 119 154 HOH HOH . K 7 HOH C 20 120 113 HOH HOH . K 7 HOH C 21 121 300 HOH HOH . K 7 HOH C 22 122 27 HOH HOH . K 7 HOH C 23 123 142 HOH HOH . K 7 HOH C 24 124 269 HOH HOH . K 7 HOH C 25 125 309 HOH HOH . K 7 HOH C 26 126 297 HOH HOH . K 7 HOH C 27 127 156 HOH HOH . K 7 HOH C 28 128 302 HOH HOH . K 7 HOH C 29 129 10 HOH HOH . K 7 HOH C 30 130 36 HOH HOH . K 7 HOH C 31 131 49 HOH HOH . K 7 HOH C 32 132 78 HOH HOH . K 7 HOH C 33 133 298 HOH HOH . K 7 HOH C 34 134 296 HOH HOH . L 7 HOH D 1 101 277 HOH HOH . L 7 HOH D 2 102 95 HOH HOH . L 7 HOH D 3 103 214 HOH HOH . L 7 HOH D 4 104 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 6 39.955 -30.552 -15.175 1 106.41 ? S SO4 101 B 1 HETATM 2 O O1 SO4 . . . G 6 40.979 -29.512 -15.264 1 91.74 ? O1 SO4 101 B 1 HETATM 3 O O2 SO4 . . . G 6 39.489 -30.915 -16.514 1 107.18 ? O2 SO4 101 B 1 HETATM 4 O O3 SO4 . . . G 6 40.52 -31.735 -14.522 1 110.57 ? O3 SO4 101 B 1 HETATM 5 O O4 SO4 . . . G 6 38.827 -30.046 -14.393 1 104.72 ? O4 SO4 101 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #