data_6YIH # _model_server_result.job_id td0y2CdwRx5BBrw0C4lT-Q _model_server_result.datetime_utc '2024-11-25 16:01:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6YIH # _exptl.entry_id 6YIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YIH _cell.length_a 99.365 _cell.length_b 99.365 _cell.length_c 56.224 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C ARG 2 D ARG 2 1_555 D N TPO 3 D TPO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 D C TPO 3 D TPO 3 1_555 D N LYS 4 D LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 59 A CYS 57 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A SG CYS 62 A CYS 60 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A NE2 HIS 79 A HIS 77 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 A SG CYS 86 A CYS 84 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 6YIH _atom_sites.fract_transf_matrix[1][1] 0.010064 _atom_sites.fract_transf_matrix[1][2] 0.00581 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 201 2 ZN ZN . F 6 SO4 A 1 202 8 SO4 SO4 . G 7 HOH A 1 301 44 HOH HOH . G 7 HOH A 2 302 81 HOH HOH . G 7 HOH A 3 303 21 HOH HOH . G 7 HOH A 4 304 8 HOH HOH . G 7 HOH A 5 305 3 HOH HOH . G 7 HOH A 6 306 80 HOH HOH . G 7 HOH A 7 307 42 HOH HOH . G 7 HOH A 8 308 25 HOH HOH . G 7 HOH A 9 309 74 HOH HOH . G 7 HOH A 10 310 70 HOH HOH . G 7 HOH A 11 311 76 HOH HOH . G 7 HOH A 12 312 79 HOH HOH . G 7 HOH A 13 313 67 HOH HOH . G 7 HOH A 14 314 75 HOH HOH . G 7 HOH A 15 315 68 HOH HOH . G 7 HOH A 16 316 73 HOH HOH . H 7 HOH B 1 101 7 HOH HOH . H 7 HOH B 2 102 9 HOH HOH . H 7 HOH B 3 103 14 HOH HOH . H 7 HOH B 4 104 37 HOH HOH . H 7 HOH B 5 105 85 HOH HOH . H 7 HOH B 6 106 31 HOH HOH . H 7 HOH B 7 107 10 HOH HOH . H 7 HOH B 8 108 5 HOH HOH . H 7 HOH B 9 109 6 HOH HOH . H 7 HOH B 10 110 2 HOH HOH . H 7 HOH B 11 111 69 HOH HOH . H 7 HOH B 12 112 18 HOH HOH . H 7 HOH B 13 113 32 HOH HOH . H 7 HOH B 14 114 16 HOH HOH . H 7 HOH B 15 115 12 HOH HOH . H 7 HOH B 16 116 82 HOH HOH . H 7 HOH B 17 117 58 HOH HOH . H 7 HOH B 18 118 83 HOH HOH . H 7 HOH B 19 119 64 HOH HOH . H 7 HOH B 20 120 78 HOH HOH . H 7 HOH B 21 121 77 HOH HOH . H 7 HOH B 22 122 22 HOH HOH . H 7 HOH B 23 123 50 HOH HOH . H 7 HOH B 24 124 84 HOH HOH . I 7 HOH C 1 101 72 HOH HOH . J 7 HOH D 1 101 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 6 38.892 15.189 -19.542 1 105.03 ? S SO4 202 A 1 HETATM 2 O O1 SO4 . . . F 6 37.636 14.446 -19.605 1 105.71 ? O1 SO4 202 A 1 HETATM 3 O O2 SO4 . . . F 6 39.275 15.615 -20.887 1 105.14 ? O2 SO4 202 A 1 HETATM 4 O O3 SO4 . . . F 6 39.939 14.338 -18.986 1 105.29 ? O3 SO4 202 A 1 HETATM 5 O O4 SO4 . . . F 6 38.718 16.358 -18.684 1 104.76 ? O4 SO4 202 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #