data_6YIM # _model_server_result.job_id gaSdYRzhvzmh78o8jSnUIw _model_server_result.datetime_utc '2025-03-13 20:16:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6YIM # _exptl.entry_id 6YIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.52 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4~{R})-~{N}-[3-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)propyl]-4-methyl-2-oxidanylidene-1,3,4,5-tetrahydro-1,5-benzodiazepine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.18 _cell.angle_gamma 90 _cell.entry_id 6YIM _cell.length_a 94.38 _cell.length_b 34.68 _cell.length_c 40.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H30 N4 O3' _chem_comp.formula_weight 422.52 _chem_comp.id OS8 _chem_comp.mon_nstd_flag . _chem_comp.name (4~{R})-~{N}-[3-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)propyl]-4-methyl-2-oxidanylidene-1,3,4,5-tetrahydro-1,5-benzodiazepine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 OS8 sing 216 n n C16 C17 OS8 sing 217 n n C15 C14 OS8 sing 218 n n C18 C17 OS8 doub 219 n y C18 C19 OS8 sing 220 n y C17 C22 OS8 sing 221 n y C14 N3 OS8 sing 222 n n C19 C20 OS8 doub 223 n y C22 N3 OS8 sing 224 n n C22 C21 OS8 doub 225 n y N3 C13 OS8 sing 226 n n C12 C13 OS8 sing 227 n n C12 C11 OS8 sing 228 n n C20 C21 OS8 sing 229 n y C20 O1 OS8 sing 230 n n C1 C2 OS8 sing 231 n n O2 C10 OS8 doub 232 n n C11 N2 OS8 sing 233 n n O1 C23 OS8 sing 234 n n C2 N4 OS8 sing 235 n n C2 C3 OS8 sing 236 n n N4 C24 OS8 sing 237 n n C10 N2 OS8 sing 238 n n C10 C9 OS8 sing 239 n n C24 C9 OS8 doub 240 n y C24 C5 OS8 sing 241 n y C3 C4 OS8 sing 242 n n C9 C8 OS8 sing 243 n y O3 C4 OS8 doub 244 n n C4 N1 OS8 sing 245 n n N1 C5 OS8 sing 246 n n C5 C6 OS8 doub 247 n y C8 C7 OS8 doub 248 n y C6 C7 OS8 sing 249 n y C14 H1 OS8 sing 250 n n C14 H2 OS8 sing 251 n n C6 H3 OS8 sing 252 n n C11 H4 OS8 sing 253 n n C11 H5 OS8 sing 254 n n C7 H6 OS8 sing 255 n n C8 H7 OS8 sing 256 n n C12 H8 OS8 sing 257 n n C12 H9 OS8 sing 258 n n C13 H10 OS8 sing 259 n n C13 H11 OS8 sing 260 n n N1 H12 OS8 sing 261 n n N2 H13 OS8 sing 262 n n C3 H14 OS8 sing 263 n n C3 H15 OS8 sing 264 n n C1 H16 OS8 sing 265 n n C1 H17 OS8 sing 266 n n C1 H18 OS8 sing 267 n n C2 H19 OS8 sing 268 n n C15 H20 OS8 sing 269 n n C15 H21 OS8 sing 270 n n C16 H22 OS8 sing 271 n n C16 H23 OS8 sing 272 n n C18 H24 OS8 sing 273 n n C19 H25 OS8 sing 274 n n C21 H26 OS8 sing 275 n n C23 H27 OS8 sing 276 n n C23 H28 OS8 sing 277 n n C23 H29 OS8 sing 278 n n N4 H30 OS8 sing 279 n n # _atom_sites.entry_id 6YIM _atom_sites.fract_transf_matrix[1][1] 0.010595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OS8 A 1 1201 1 OS8 DRG . C 3 HOH A 1 1301 3 HOH HOH . C 3 HOH A 2 1302 67 HOH HOH . C 3 HOH A 3 1303 54 HOH HOH . C 3 HOH A 4 1304 59 HOH HOH . C 3 HOH A 5 1305 45 HOH HOH . C 3 HOH A 6 1306 49 HOH HOH . C 3 HOH A 7 1307 37 HOH HOH . C 3 HOH A 8 1308 86 HOH HOH . C 3 HOH A 9 1309 58 HOH HOH . C 3 HOH A 10 1310 39 HOH HOH . C 3 HOH A 11 1311 60 HOH HOH . C 3 HOH A 12 1312 18 HOH HOH . C 3 HOH A 13 1313 76 HOH HOH . C 3 HOH A 14 1314 167 HOH HOH . C 3 HOH A 15 1315 5 HOH HOH . C 3 HOH A 16 1316 33 HOH HOH . C 3 HOH A 17 1317 85 HOH HOH . C 3 HOH A 18 1318 158 HOH HOH . C 3 HOH A 19 1319 187 HOH HOH . C 3 HOH A 20 1320 29 HOH HOH . C 3 HOH A 21 1321 156 HOH HOH . C 3 HOH A 22 1322 16 HOH HOH . C 3 HOH A 23 1323 25 HOH HOH . C 3 HOH A 24 1324 190 HOH HOH . C 3 HOH A 25 1325 20 HOH HOH . C 3 HOH A 26 1326 162 HOH HOH . C 3 HOH A 27 1327 161 HOH HOH . C 3 HOH A 28 1328 10 HOH HOH . C 3 HOH A 29 1329 27 HOH HOH . C 3 HOH A 30 1330 111 HOH HOH . C 3 HOH A 31 1331 64 HOH HOH . C 3 HOH A 32 1332 136 HOH HOH . C 3 HOH A 33 1333 74 HOH HOH . C 3 HOH A 34 1334 38 HOH HOH . C 3 HOH A 35 1335 92 HOH HOH . C 3 HOH A 36 1336 61 HOH HOH . C 3 HOH A 37 1337 107 HOH HOH . C 3 HOH A 38 1338 142 HOH HOH . C 3 HOH A 39 1339 17 HOH HOH . C 3 HOH A 40 1340 23 HOH HOH . C 3 HOH A 41 1341 181 HOH HOH . C 3 HOH A 42 1342 34 HOH HOH . C 3 HOH A 43 1343 65 HOH HOH . C 3 HOH A 44 1344 80 HOH HOH . C 3 HOH A 45 1345 21 HOH HOH . C 3 HOH A 46 1346 14 HOH HOH . C 3 HOH A 47 1347 189 HOH HOH . C 3 HOH A 48 1348 9 HOH HOH . C 3 HOH A 49 1349 127 HOH HOH . C 3 HOH A 50 1350 169 HOH HOH . C 3 HOH A 51 1351 7 HOH HOH . C 3 HOH A 52 1352 26 HOH HOH . C 3 HOH A 53 1353 1 HOH HOH . C 3 HOH A 54 1354 194 HOH HOH . C 3 HOH A 55 1355 6 HOH HOH . C 3 HOH A 56 1356 72 HOH HOH . C 3 HOH A 57 1357 13 HOH HOH . C 3 HOH A 58 1358 155 HOH HOH . C 3 HOH A 59 1359 22 HOH HOH . C 3 HOH A 60 1360 30 HOH HOH . C 3 HOH A 61 1361 117 HOH HOH . C 3 HOH A 62 1362 188 HOH HOH . C 3 HOH A 63 1363 51 HOH HOH . C 3 HOH A 64 1364 150 HOH HOH . C 3 HOH A 65 1365 2 HOH HOH . C 3 HOH A 66 1366 35 HOH HOH . C 3 HOH A 67 1367 12 HOH HOH . C 3 HOH A 68 1368 43 HOH HOH . C 3 HOH A 69 1369 115 HOH HOH . C 3 HOH A 70 1370 79 HOH HOH . C 3 HOH A 71 1371 153 HOH HOH . C 3 HOH A 72 1372 19 HOH HOH . C 3 HOH A 73 1373 128 HOH HOH . C 3 HOH A 74 1374 42 HOH HOH . C 3 HOH A 75 1375 83 HOH HOH . C 3 HOH A 76 1376 78 HOH HOH . C 3 HOH A 77 1377 36 HOH HOH . C 3 HOH A 78 1378 41 HOH HOH . C 3 HOH A 79 1379 40 HOH HOH . C 3 HOH A 80 1380 69 HOH HOH . C 3 HOH A 81 1381 66 HOH HOH . C 3 HOH A 82 1382 102 HOH HOH . C 3 HOH A 83 1383 50 HOH HOH . C 3 HOH A 84 1384 91 HOH HOH . C 3 HOH A 85 1385 124 HOH HOH . C 3 HOH A 86 1386 195 HOH HOH . C 3 HOH A 87 1387 119 HOH HOH . C 3 HOH A 88 1388 146 HOH HOH . C 3 HOH A 89 1389 109 HOH HOH . C 3 HOH A 90 1390 172 HOH HOH . C 3 HOH A 91 1391 52 HOH HOH . C 3 HOH A 92 1392 141 HOH HOH . C 3 HOH A 93 1393 24 HOH HOH . C 3 HOH A 94 1394 15 HOH HOH . C 3 HOH A 95 1395 177 HOH HOH . C 3 HOH A 96 1396 131 HOH HOH . C 3 HOH A 97 1397 89 HOH HOH . C 3 HOH A 98 1398 186 HOH HOH . C 3 HOH A 99 1399 176 HOH HOH . C 3 HOH A 100 1400 8 HOH HOH . C 3 HOH A 101 1401 87 HOH HOH . C 3 HOH A 102 1402 70 HOH HOH . C 3 HOH A 103 1403 55 HOH HOH . C 3 HOH A 104 1404 88 HOH HOH . C 3 HOH A 105 1405 164 HOH HOH . C 3 HOH A 106 1406 185 HOH HOH . C 3 HOH A 107 1407 68 HOH HOH . C 3 HOH A 108 1408 63 HOH HOH . C 3 HOH A 109 1409 193 HOH HOH . C 3 HOH A 110 1410 192 HOH HOH . C 3 HOH A 111 1411 81 HOH HOH . C 3 HOH A 112 1412 103 HOH HOH . C 3 HOH A 113 1413 196 HOH HOH . C 3 HOH A 114 1414 53 HOH HOH . C 3 HOH A 115 1415 163 HOH HOH . C 3 HOH A 116 1416 137 HOH HOH . C 3 HOH A 117 1417 138 HOH HOH . C 3 HOH A 118 1418 199 HOH HOH . C 3 HOH A 119 1419 148 HOH HOH . C 3 HOH A 120 1420 183 HOH HOH . C 3 HOH A 121 1421 57 HOH HOH . C 3 HOH A 122 1422 120 HOH HOH . C 3 HOH A 123 1423 90 HOH HOH . C 3 HOH A 124 1424 126 HOH HOH . C 3 HOH A 125 1425 198 HOH HOH . C 3 HOH A 126 1426 197 HOH HOH . C 3 HOH A 127 1427 171 HOH HOH . C 3 HOH A 128 1428 147 HOH HOH . C 3 HOH A 129 1429 168 HOH HOH . C 3 HOH A 130 1430 180 HOH HOH . C 3 HOH A 131 1431 104 HOH HOH . C 3 HOH A 132 1432 94 HOH HOH . C 3 HOH A 133 1433 175 HOH HOH . C 3 HOH A 134 1434 123 HOH HOH . C 3 HOH A 135 1435 140 HOH HOH . C 3 HOH A 136 1436 165 HOH HOH . C 3 HOH A 137 1437 145 HOH HOH . C 3 HOH A 138 1438 135 HOH HOH . C 3 HOH A 139 1439 166 HOH HOH . C 3 HOH A 140 1440 178 HOH HOH . C 3 HOH A 141 1441 174 HOH HOH . C 3 HOH A 142 1442 101 HOH HOH . C 3 HOH A 143 1443 159 HOH HOH . C 3 HOH A 144 1444 113 HOH HOH . C 3 HOH A 145 1445 184 HOH HOH . C 3 HOH A 146 1446 191 HOH HOH . C 3 HOH A 147 1447 152 HOH HOH . C 3 HOH A 148 1448 114 HOH HOH . C 3 HOH A 149 1449 116 HOH HOH . C 3 HOH A 150 1450 99 HOH HOH . C 3 HOH A 151 1451 95 HOH HOH . C 3 HOH A 152 1452 125 HOH HOH . C 3 HOH A 153 1453 122 HOH HOH . C 3 HOH A 154 1454 179 HOH HOH . C 3 HOH A 155 1455 46 HOH HOH . C 3 HOH A 156 1456 160 HOH HOH . C 3 HOH A 157 1457 98 HOH HOH . C 3 HOH A 158 1458 75 HOH HOH . C 3 HOH A 159 1459 130 HOH HOH . C 3 HOH A 160 1460 170 HOH HOH . C 3 HOH A 161 1461 143 HOH HOH . C 3 HOH A 162 1462 182 HOH HOH . C 3 HOH A 163 1463 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 OS8 . . . B 2 26.634 34.554 26.379 1 9.03 ? C4 OS8 1201 A 1 HETATM 2 C C14 OS8 . . . B 2 26.956 44.778 21.519 1 20.11 ? C14 OS8 1201 A 1 HETATM 3 C C5 OS8 . . . B 2 26.35 36.984 26.922 1 10.56 ? C5 OS8 1201 A 1 HETATM 4 C C6 OS8 . . . B 2 26.008 37.654 28.05 1 12.48 ? C6 OS8 1201 A 1 HETATM 5 C C11 OS8 . . . B 2 29.157 41.66 23.965 1 13.25 ? C11 OS8 1201 A 1 HETATM 6 C C7 OS8 . . . B 2 26.328 39.001 28.168 1 14.52 ? C7 OS8 1201 A 1 HETATM 7 C C8 OS8 . . . B 2 26.98 39.638 27.125 1 14.68 ? C8 OS8 1201 A 1 HETATM 8 C C9 OS8 . . . B 2 27.316 38.944 25.949 1 12.97 ? C9 OS8 1201 A 1 HETATM 9 C C10 OS8 . . . B 2 28.027 39.637 24.847 1 12.58 ? C10 OS8 1201 A 1 HETATM 10 C C12 OS8 . . . B 2 28.189 42.233 22.952 1 12.13 ? C12 OS8 1201 A 1 HETATM 11 C C13 OS8 . . . B 2 27.527 43.463 23.559 1 13.68 ? C13 OS8 1201 A 1 HETATM 12 N N1 OS8 . . . B 2 25.889 35.606 26.888 1 10.2 ? N1 OS8 1201 A 1 HETATM 13 N N2 OS8 . . . B 2 28.422 40.981 25.017 1 13.34 ? N2 OS8 1201 A 1 HETATM 14 C C3 OS8 . . . B 2 28.022 34.875 25.866 1 10.24 ? C3 OS8 1201 A 1 HETATM 15 N N3 OS8 . . . B 2 26.412 44.049 22.738 1 16.29 ? N3 OS8 1201 A 1 HETATM 16 C C1 OS8 . . . B 2 27.318 34.724 23.448 1 10.66 ? C1 OS8 1201 A 1 HETATM 17 C C2 OS8 . . . B 2 27.945 35.588 24.521 1 10.41 ? C2 OS8 1201 A 1 HETATM 18 C C15 OS8 . . . B 2 25.812 45.532 20.88 1 19.77 ? C15 OS8 1201 A 1 HETATM 19 C C16 OS8 . . . B 2 24.761 44.539 20.395 1 17.47 ? C16 OS8 1201 A 1 HETATM 20 C C17 OS8 . . . B 2 24.336 43.539 21.462 1 15.71 ? C17 OS8 1201 A 1 HETATM 21 C C18 OS8 . . . B 2 23.153 42.847 21.334 1 14.93 ? C18 OS8 1201 A 1 HETATM 22 C C19 OS8 . . . B 2 22.764 41.945 22.302 1 15.01 ? C19 OS8 1201 A 1 HETATM 23 C C20 OS8 . . . B 2 23.545 41.721 23.399 1 14.65 ? C20 OS8 1201 A 1 HETATM 24 C C21 OS8 . . . B 2 24.773 42.419 23.55 1 15.56 ? C21 OS8 1201 A 1 HETATM 25 C C22 OS8 . . . B 2 25.174 43.303 22.552 1 15.84 ? C22 OS8 1201 A 1 HETATM 26 O O1 OS8 . . . B 2 23.112 40.836 24.315 1 16.42 ? O1 OS8 1201 A 1 HETATM 27 C C23 OS8 . . . B 2 23.858 40.538 25.48 1 15.18 ? C23 OS8 1201 A 1 HETATM 28 O O2 OS8 . . . B 2 28.36 39.099 23.802 1 15.97 ? O2 OS8 1201 A 1 HETATM 29 C C24 OS8 . . . B 2 26.991 37.581 25.858 1 10.48 ? C24 OS8 1201 A 1 HETATM 30 N N4 OS8 . . . B 2 27.236 36.854 24.62 1 11.05 ? N4 OS8 1201 A 1 HETATM 31 O O3 OS8 . . . B 2 26.161 33.443 26.346 1 8.94 ? O3 OS8 1201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #