data_6YIN # _model_server_result.job_id fmU71OMCofCMFoOX8Dj-ww _model_server_result.datetime_utc '2024-10-19 03:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6YIN # _exptl.entry_id 6YIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.52 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4~{R})-~{N}-[3-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)propyl]-4-methyl-2-oxidanylidene-1,3,4,5-tetrahydro-1,5-benzodiazepine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YIN _cell.length_a 41.603 _cell.length_b 48.347 _cell.length_c 58.962 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H30 N4 O3' _chem_comp.formula_weight 422.52 _chem_comp.id OS8 _chem_comp.mon_nstd_flag . _chem_comp.name (4~{R})-~{N}-[3-(7-methoxy-3,4-dihydro-2~{H}-quinolin-1-yl)propyl]-4-methyl-2-oxidanylidene-1,3,4,5-tetrahydro-1,5-benzodiazepine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 OS8 sing 237 n n C16 C17 OS8 sing 238 n n C15 C14 OS8 sing 239 n n C18 C17 OS8 doub 240 n y C18 C19 OS8 sing 241 n y C17 C22 OS8 sing 242 n y C14 N3 OS8 sing 243 n n C19 C20 OS8 doub 244 n y C22 N3 OS8 sing 245 n n C22 C21 OS8 doub 246 n y N3 C13 OS8 sing 247 n n C12 C13 OS8 sing 248 n n C12 C11 OS8 sing 249 n n C20 C21 OS8 sing 250 n y C20 O1 OS8 sing 251 n n C1 C2 OS8 sing 252 n n O2 C10 OS8 doub 253 n n C11 N2 OS8 sing 254 n n O1 C23 OS8 sing 255 n n C2 N4 OS8 sing 256 n n C2 C3 OS8 sing 257 n n N4 C24 OS8 sing 258 n n C10 N2 OS8 sing 259 n n C10 C9 OS8 sing 260 n n C24 C9 OS8 doub 261 n y C24 C5 OS8 sing 262 n y C3 C4 OS8 sing 263 n n C9 C8 OS8 sing 264 n y O3 C4 OS8 doub 265 n n C4 N1 OS8 sing 266 n n N1 C5 OS8 sing 267 n n C5 C6 OS8 doub 268 n y C8 C7 OS8 doub 269 n y C6 C7 OS8 sing 270 n y C14 H1 OS8 sing 271 n n C14 H2 OS8 sing 272 n n C6 H3 OS8 sing 273 n n C11 H4 OS8 sing 274 n n C11 H5 OS8 sing 275 n n C7 H6 OS8 sing 276 n n C8 H7 OS8 sing 277 n n C12 H8 OS8 sing 278 n n C12 H9 OS8 sing 279 n n C13 H10 OS8 sing 280 n n C13 H11 OS8 sing 281 n n N1 H12 OS8 sing 282 n n N2 H13 OS8 sing 283 n n C3 H14 OS8 sing 284 n n C3 H15 OS8 sing 285 n n C1 H16 OS8 sing 286 n n C1 H17 OS8 sing 287 n n C1 H18 OS8 sing 288 n n C2 H19 OS8 sing 289 n n C15 H20 OS8 sing 290 n n C15 H21 OS8 sing 291 n n C16 H22 OS8 sing 292 n n C16 H23 OS8 sing 293 n n C18 H24 OS8 sing 294 n n C19 H25 OS8 sing 295 n n C21 H26 OS8 sing 296 n n C23 H27 OS8 sing 297 n n C23 H28 OS8 sing 298 n n C23 H29 OS8 sing 299 n n N4 H30 OS8 sing 300 n n # _atom_sites.entry_id 6YIN _atom_sites.fract_transf_matrix[1][1] 0.024037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OS8 A 1 201 1 OS8 DRG . C 3 HOH A 1 301 37 HOH HOH . C 3 HOH A 2 302 90 HOH HOH . C 3 HOH A 3 303 56 HOH HOH . C 3 HOH A 4 304 88 HOH HOH . C 3 HOH A 5 305 4 HOH HOH . C 3 HOH A 6 306 58 HOH HOH . C 3 HOH A 7 307 82 HOH HOH . C 3 HOH A 8 308 2 HOH HOH . C 3 HOH A 9 309 85 HOH HOH . C 3 HOH A 10 310 39 HOH HOH . C 3 HOH A 11 311 33 HOH HOH . C 3 HOH A 12 312 57 HOH HOH . C 3 HOH A 13 313 78 HOH HOH . C 3 HOH A 14 314 50 HOH HOH . C 3 HOH A 15 315 51 HOH HOH . C 3 HOH A 16 316 64 HOH HOH . C 3 HOH A 17 317 8 HOH HOH . C 3 HOH A 18 318 29 HOH HOH . C 3 HOH A 19 319 16 HOH HOH . C 3 HOH A 20 320 48 HOH HOH . C 3 HOH A 21 321 3 HOH HOH . C 3 HOH A 22 322 36 HOH HOH . C 3 HOH A 23 323 66 HOH HOH . C 3 HOH A 24 324 63 HOH HOH . C 3 HOH A 25 325 14 HOH HOH . C 3 HOH A 26 326 6 HOH HOH . C 3 HOH A 27 327 15 HOH HOH . C 3 HOH A 28 328 40 HOH HOH . C 3 HOH A 29 329 34 HOH HOH . C 3 HOH A 30 330 7 HOH HOH . C 3 HOH A 31 331 19 HOH HOH . C 3 HOH A 32 332 91 HOH HOH . C 3 HOH A 33 333 70 HOH HOH . C 3 HOH A 34 334 84 HOH HOH . C 3 HOH A 35 335 13 HOH HOH . C 3 HOH A 36 336 5 HOH HOH . C 3 HOH A 37 337 11 HOH HOH . C 3 HOH A 38 338 52 HOH HOH . C 3 HOH A 39 339 69 HOH HOH . C 3 HOH A 40 340 20 HOH HOH . C 3 HOH A 41 341 18 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 10 HOH HOH . C 3 HOH A 44 344 81 HOH HOH . C 3 HOH A 45 345 24 HOH HOH . C 3 HOH A 46 346 73 HOH HOH . C 3 HOH A 47 347 67 HOH HOH . C 3 HOH A 48 348 49 HOH HOH . C 3 HOH A 49 349 17 HOH HOH . C 3 HOH A 50 350 54 HOH HOH . C 3 HOH A 51 351 44 HOH HOH . C 3 HOH A 52 352 72 HOH HOH . C 3 HOH A 53 353 30 HOH HOH . C 3 HOH A 54 354 68 HOH HOH . C 3 HOH A 55 355 83 HOH HOH . C 3 HOH A 56 356 47 HOH HOH . C 3 HOH A 57 357 87 HOH HOH . C 3 HOH A 58 358 31 HOH HOH . C 3 HOH A 59 359 22 HOH HOH . C 3 HOH A 60 360 53 HOH HOH . C 3 HOH A 61 361 74 HOH HOH . C 3 HOH A 62 362 32 HOH HOH . C 3 HOH A 63 363 26 HOH HOH . C 3 HOH A 64 364 79 HOH HOH . C 3 HOH A 65 365 76 HOH HOH . C 3 HOH A 66 366 55 HOH HOH . C 3 HOH A 67 367 86 HOH HOH . C 3 HOH A 68 368 27 HOH HOH . C 3 HOH A 69 369 59 HOH HOH . C 3 HOH A 70 370 80 HOH HOH . C 3 HOH A 71 371 89 HOH HOH . C 3 HOH A 72 372 92 HOH HOH . C 3 HOH A 73 373 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 OS8 . . . B 2 26.3 37.555 20.707 1 22.51 ? C4 OS8 201 A 1 HETATM 2 C C14 OS8 . . . B 2 22.314 27.716 26.212 1 47.11 ? C14 OS8 201 A 1 HETATM 3 C C5 OS8 . . . B 2 25.081 36.706 22.769 1 28.5 ? C5 OS8 201 A 1 HETATM 4 C C6 OS8 . . . B 2 24.158 37.159 23.699 1 32.01 ? C6 OS8 201 A 1 HETATM 5 C C11 OS8 . . . B 2 25.114 30.802 24.16 1 41.55 ? C11 OS8 201 A 1 HETATM 6 C C7 OS8 . . . B 2 23.462 36.235 24.436 1 28.4 ? C7 OS8 201 A 1 HETATM 7 C C8 OS8 . . . B 2 23.713 34.894 24.244 1 29.87 ? C8 OS8 201 A 1 HETATM 8 C C9 OS8 . . . B 2 24.616 34.478 23.3 1 32.48 ? C9 OS8 201 A 1 HETATM 9 C C10 OS8 . . . B 2 24.846 33.045 23.113 1 33.32 ? C10 OS8 201 A 1 HETATM 10 C C12 OS8 . . . B 2 23.99 30.023 24.742 1 43.78 ? C12 OS8 201 A 1 HETATM 11 C C13 OS8 . . . B 2 24.394 28.583 24.937 1 38.46 ? C13 OS8 201 A 1 HETATM 12 N N1 OS8 . . . B 2 25.845 37.678 22.036 1 24.53 ? N1 OS8 201 A 1 HETATM 13 N N2 OS8 . . . B 2 24.648 32.165 24.206 1 41.26 ? N2 OS8 201 A 1 HETATM 14 C C3 OS8 . . . B 2 25.696 36.469 19.878 1 23.28 ? C3 OS8 201 A 1 HETATM 15 N N3 OS8 . . . B 2 23.056 27.935 24.891 1 39.62 ? N3 OS8 201 A 1 HETATM 16 C C1 OS8 . . . B 2 27.725 34.971 19.751 1 26.16 ? C1 OS8 201 A 1 HETATM 17 C C2 OS8 . . . B 2 26.299 35.095 20.252 1 25.54 ? C2 OS8 201 A 1 HETATM 18 C C15 OS8 . . . B 2 20.825 27.399 26.026 1 44.84 ? C15 OS8 201 A 1 HETATM 19 C C16 OS8 . . . B 2 20.579 26.356 24.949 1 40.85 ? C16 OS8 201 A 1 HETATM 20 C C17 OS8 . . . B 2 21.323 26.621 23.675 1 32.27 ? C17 OS8 201 A 1 HETATM 21 C C18 OS8 . . . B 2 20.804 26.077 22.52 1 31.96 ? C18 OS8 201 A 1 HETATM 22 C C19 OS8 . . . B 2 21.428 26.258 21.345 1 33.5 ? C19 OS8 201 A 1 HETATM 23 C C20 OS8 . . . B 2 22.604 27.012 21.302 1 29.9 ? C20 OS8 201 A 1 HETATM 24 C C21 OS8 . . . B 2 23.143 27.563 22.454 1 28.25 ? C21 OS8 201 A 1 HETATM 25 C C22 OS8 . . . B 2 22.504 27.354 23.678 1 35.78 ? C22 OS8 201 A 1 HETATM 26 O O1 OS8 . . . B 2 23.171 27.11 20.113 1 30.46 ? O1 OS8 201 A 1 HETATM 27 C C23 OS8 . . . B 2 24.44 27.742 19.914 1 34.02 ? C23 OS8 201 A 1 HETATM 28 O O2 OS8 . . . B 2 25.336 32.661 22.073 1 39.1 ? O2 OS8 201 A 1 HETATM 29 C C24 OS8 . . . B 2 25.342 35.37 22.563 1 27.15 ? C24 OS8 201 A 1 HETATM 30 N N4 OS8 . . . B 2 26.361 34.875 21.629 1 27.67 ? N4 OS8 201 A 1 HETATM 31 O O3 OS8 . . . B 2 27.052 38.46 20.302 1 24.66 ? O3 OS8 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #