data_6YJ7
#
_model_server_result.job_id            0r2qAmpoglrvz7jtoCTADA 
_model_server_result.datetime_utc      '2024-10-10 07:22:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6YJ7 
#
_exptl.entry_id    6YJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YJ7 
_cell.length_a            41.31 
_cell.length_b            69.26 
_cell.length_c            105.42 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6YJ7 
_atom_sites.fract_transf_matrix[1][1]    0.024207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 201 201 AMP AMP . 
D 3 CL A 1 202 1 CL CL . 
E 2 AMP B 1 201 201 AMP AMP . 
F 4 HOH A 1 301 166 HOH HOH . 
F 4 HOH A 2 302 162 HOH HOH . 
F 4 HOH A 3 303 93 HOH HOH . 
F 4 HOH A 4 304 134 HOH HOH . 
F 4 HOH A 5 305 18 HOH HOH . 
F 4 HOH A 6 306 99 HOH HOH . 
F 4 HOH A 7 307 164 HOH HOH . 
F 4 HOH A 8 308 165 HOH HOH . 
F 4 HOH A 9 309 17 HOH HOH . 
F 4 HOH A 10 310 111 HOH HOH . 
F 4 HOH A 11 311 92 HOH HOH . 
F 4 HOH A 12 312 75 HOH HOH . 
F 4 HOH A 13 313 132 HOH HOH . 
F 4 HOH A 14 314 2 HOH HOH . 
F 4 HOH A 15 315 158 HOH HOH . 
F 4 HOH A 16 316 19 HOH HOH . 
F 4 HOH A 17 317 171 HOH HOH . 
F 4 HOH A 18 318 8 HOH HOH . 
F 4 HOH A 19 319 42 HOH HOH . 
F 4 HOH A 20 320 38 HOH HOH . 
F 4 HOH A 21 321 186 HOH HOH . 
F 4 HOH A 22 322 88 HOH HOH . 
F 4 HOH A 23 323 133 HOH HOH . 
F 4 HOH A 24 324 83 HOH HOH . 
F 4 HOH A 25 325 33 HOH HOH . 
F 4 HOH A 26 326 3 HOH HOH . 
F 4 HOH A 27 327 9 HOH HOH . 
F 4 HOH A 28 328 12 HOH HOH . 
F 4 HOH A 29 329 95 HOH HOH . 
F 4 HOH A 30 330 69 HOH HOH . 
F 4 HOH A 31 331 29 HOH HOH . 
F 4 HOH A 32 332 87 HOH HOH . 
F 4 HOH A 33 333 82 HOH HOH . 
F 4 HOH A 34 334 146 HOH HOH . 
F 4 HOH A 35 335 14 HOH HOH . 
F 4 HOH A 36 336 106 HOH HOH . 
F 4 HOH A 37 337 27 HOH HOH . 
F 4 HOH A 38 338 26 HOH HOH . 
F 4 HOH A 39 339 10 HOH HOH . 
F 4 HOH A 40 340 100 HOH HOH . 
F 4 HOH A 41 341 31 HOH HOH . 
F 4 HOH A 42 342 198 HOH HOH . 
F 4 HOH A 43 343 30 HOH HOH . 
F 4 HOH A 44 344 135 HOH HOH . 
F 4 HOH A 45 345 205 HOH HOH . 
F 4 HOH A 46 346 22 HOH HOH . 
F 4 HOH A 47 347 137 HOH HOH . 
F 4 HOH A 48 348 105 HOH HOH . 
F 4 HOH A 49 349 23 HOH HOH . 
F 4 HOH A 50 350 155 HOH HOH . 
F 4 HOH A 51 351 39 HOH HOH . 
F 4 HOH A 52 352 163 HOH HOH . 
F 4 HOH A 53 353 202 HOH HOH . 
F 4 HOH A 54 354 74 HOH HOH . 
F 4 HOH A 55 355 25 HOH HOH . 
F 4 HOH A 56 356 80 HOH HOH . 
F 4 HOH A 57 357 94 HOH HOH . 
F 4 HOH A 58 358 40 HOH HOH . 
F 4 HOH A 59 359 4 HOH HOH . 
F 4 HOH A 60 360 45 HOH HOH . 
F 4 HOH A 61 361 97 HOH HOH . 
F 4 HOH A 62 362 28 HOH HOH . 
F 4 HOH A 63 363 81 HOH HOH . 
F 4 HOH A 64 364 70 HOH HOH . 
F 4 HOH A 65 365 151 HOH HOH . 
F 4 HOH A 66 366 76 HOH HOH . 
F 4 HOH A 67 367 98 HOH HOH . 
F 4 HOH A 68 368 156 HOH HOH . 
F 4 HOH A 69 369 96 HOH HOH . 
F 4 HOH A 70 370 178 HOH HOH . 
F 4 HOH A 71 371 161 HOH HOH . 
F 4 HOH A 72 372 34 HOH HOH . 
F 4 HOH A 73 373 89 HOH HOH . 
F 4 HOH A 74 374 44 HOH HOH . 
F 4 HOH A 75 375 21 HOH HOH . 
F 4 HOH A 76 376 139 HOH HOH . 
F 4 HOH A 77 377 78 HOH HOH . 
F 4 HOH A 78 378 13 HOH HOH . 
F 4 HOH A 79 379 143 HOH HOH . 
F 4 HOH A 80 380 65 HOH HOH . 
F 4 HOH A 81 381 177 HOH HOH . 
F 4 HOH A 82 382 108 HOH HOH . 
F 4 HOH A 83 383 43 HOH HOH . 
F 4 HOH A 84 384 157 HOH HOH . 
F 4 HOH A 85 385 185 HOH HOH . 
F 4 HOH A 86 386 182 HOH HOH . 
F 4 HOH A 87 387 86 HOH HOH . 
F 4 HOH A 88 388 71 HOH HOH . 
F 4 HOH A 89 389 41 HOH HOH . 
F 4 HOH A 90 390 50 HOH HOH . 
F 4 HOH A 91 391 140 HOH HOH . 
F 4 HOH A 92 392 72 HOH HOH . 
F 4 HOH A 93 393 145 HOH HOH . 
F 4 HOH A 94 394 129 HOH HOH . 
F 4 HOH A 95 395 170 HOH HOH . 
F 4 HOH A 96 396 144 HOH HOH . 
F 4 HOH A 97 397 136 HOH HOH . 
F 4 HOH A 98 398 179 HOH HOH . 
G 4 HOH B 1 301 112 HOH HOH . 
G 4 HOH B 2 302 148 HOH HOH . 
G 4 HOH B 3 303 174 HOH HOH . 
G 4 HOH B 4 304 91 HOH HOH . 
G 4 HOH B 5 305 62 HOH HOH . 
G 4 HOH B 6 306 46 HOH HOH . 
G 4 HOH B 7 307 173 HOH HOH . 
G 4 HOH B 8 308 160 HOH HOH . 
G 4 HOH B 9 309 35 HOH HOH . 
G 4 HOH B 10 310 193 HOH HOH . 
G 4 HOH B 11 311 118 HOH HOH . 
G 4 HOH B 12 312 16 HOH HOH . 
G 4 HOH B 13 313 102 HOH HOH . 
G 4 HOH B 14 314 167 HOH HOH . 
G 4 HOH B 15 315 53 HOH HOH . 
G 4 HOH B 16 316 149 HOH HOH . 
G 4 HOH B 17 317 6 HOH HOH . 
G 4 HOH B 18 318 68 HOH HOH . 
G 4 HOH B 19 319 5 HOH HOH . 
G 4 HOH B 20 320 48 HOH HOH . 
G 4 HOH B 21 321 113 HOH HOH . 
G 4 HOH B 22 322 56 HOH HOH . 
G 4 HOH B 23 323 127 HOH HOH . 
G 4 HOH B 24 324 61 HOH HOH . 
G 4 HOH B 25 325 7 HOH HOH . 
G 4 HOH B 26 326 124 HOH HOH . 
G 4 HOH B 27 327 114 HOH HOH . 
G 4 HOH B 28 328 120 HOH HOH . 
G 4 HOH B 29 329 66 HOH HOH . 
G 4 HOH B 30 330 49 HOH HOH . 
G 4 HOH B 31 331 195 HOH HOH . 
G 4 HOH B 32 332 131 HOH HOH . 
G 4 HOH B 33 333 204 HOH HOH . 
G 4 HOH B 34 334 115 HOH HOH . 
G 4 HOH B 35 335 15 HOH HOH . 
G 4 HOH B 36 336 116 HOH HOH . 
G 4 HOH B 37 337 188 HOH HOH . 
G 4 HOH B 38 338 159 HOH HOH . 
G 4 HOH B 39 339 191 HOH HOH . 
G 4 HOH B 40 340 142 HOH HOH . 
G 4 HOH B 41 341 196 HOH HOH . 
G 4 HOH B 42 342 147 HOH HOH . 
G 4 HOH B 43 343 125 HOH HOH . 
G 4 HOH B 44 344 190 HOH HOH . 
G 4 HOH B 45 345 51 HOH HOH . 
G 4 HOH B 46 346 175 HOH HOH . 
G 4 HOH B 47 347 128 HOH HOH . 
G 4 HOH B 48 348 24 HOH HOH . 
G 4 HOH B 49 349 192 HOH HOH . 
G 4 HOH B 50 350 119 HOH HOH . 
G 4 HOH B 51 351 107 HOH HOH . 
G 4 HOH B 52 352 181 HOH HOH . 
G 4 HOH B 53 353 60 HOH HOH . 
G 4 HOH B 54 354 201 HOH HOH . 
G 4 HOH B 55 355 150 HOH HOH . 
G 4 HOH B 56 356 67 HOH HOH . 
G 4 HOH B 57 357 54 HOH HOH . 
G 4 HOH B 58 358 103 HOH HOH . 
G 4 HOH B 59 359 117 HOH HOH . 
G 4 HOH B 60 360 84 HOH HOH . 
G 4 HOH B 61 361 55 HOH HOH . 
G 4 HOH B 62 362 57 HOH HOH . 
G 4 HOH B 63 363 52 HOH HOH . 
G 4 HOH B 64 364 180 HOH HOH . 
G 4 HOH B 65 365 172 HOH HOH . 
G 4 HOH B 66 366 126 HOH HOH . 
G 4 HOH B 67 367 141 HOH HOH . 
G 4 HOH B 68 368 169 HOH HOH . 
G 4 HOH B 69 369 121 HOH HOH . 
G 4 HOH B 70 370 109 HOH HOH . 
G 4 HOH B 71 371 11 HOH HOH . 
G 4 HOH B 72 372 138 HOH HOH . 
G 4 HOH B 73 373 64 HOH HOH . 
G 4 HOH B 74 374 203 HOH HOH . 
G 4 HOH B 75 375 168 HOH HOH . 
G 4 HOH B 76 376 63 HOH HOH . 
G 4 HOH B 77 377 123 HOH HOH . 
G 4 HOH B 78 378 176 HOH HOH . 
G 4 HOH B 79 379 153 HOH HOH . 
G 4 HOH B 80 380 47 HOH HOH . 
G 4 HOH B 81 381 199 HOH HOH . 
G 4 HOH B 82 382 110 HOH HOH . 
G 4 HOH B 83 383 79 HOH HOH . 
G 4 HOH B 84 384 197 HOH HOH . 
G 4 HOH B 85 385 59 HOH HOH . 
G 4 HOH B 86 386 58 HOH HOH . 
G 4 HOH B 87 387 187 HOH HOH . 
G 4 HOH B 88 388 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . A . C 2 3.962 -10.503 13.056 0.81 51.06 ? P AMP 201 A 1 
HETATM 2 O O1P AMP . A . C 2 2.742 -10.406 12.193 0.81 34.59 ? O1P AMP 201 A 1 
HETATM 3 O O2P AMP . A . C 2 4.625 -11.853 13.26 0.81 47.15 ? O2P AMP 201 A 1 
HETATM 4 O O3P AMP . A . C 2 4.876 -9.306 12.945 0.81 60.11 ? O3P AMP 201 A 1 
HETATM 5 O O5' AMP . A . C 2 3.31 -10.328 14.49 0.81 46.36 ? O5' AMP 201 A 1 
HETATM 6 C C5' AMP . A . C 2 2.911 -9.061 14.961 0.81 41.46 ? C5' AMP 201 A 1 
HETATM 7 C C4' AMP . A . C 2 2.568 -9.178 16.418 0.81 36.22 ? C4' AMP 201 A 1 
HETATM 8 O O4' AMP . A . C 2 1.509 -10.159 16.574 0.81 30.17 ? O4' AMP 201 A 1 
HETATM 9 C C3' AMP . A . C 2 3.667 -9.717 17.321 0.81 35.3 ? C3' AMP 201 A 1 
HETATM 10 O O3' AMP . A . C 2 4.62 -8.739 17.707 0.81 32.64 ? O3' AMP 201 A 1 
HETATM 11 C C2' AMP . A . C 2 2.868 -10.231 18.489 0.81 39.61 ? C2' AMP 201 A 1 
HETATM 12 O O2' AMP . A . C 2 2.349 -9.143 19.2 0.81 36.34 ? O2' AMP 201 A 1 
HETATM 13 C C1' AMP . A . C 2 1.7 -10.868 17.77 0.81 31.44 ? C1' AMP 201 A 1 
HETATM 14 N N9 AMP . A . C 2 1.976 -12.261 17.429 0.81 35.11 ? N9 AMP 201 A 1 
HETATM 15 C C8 AMP . A . C 2 2.166 -12.726 16.188 0.81 31.62 ? C8 AMP 201 A 1 
HETATM 16 N N7 AMP . A . C 2 2.356 -14.058 16.237 0.81 36.71 ? N7 AMP 201 A 1 
HETATM 17 C C5 AMP . A . C 2 2.246 -14.448 17.515 0.81 37.42 ? C5 AMP 201 A 1 
HETATM 18 C C6 AMP . A . C 2 2.344 -15.724 18.208 0.81 41.35 ? C6 AMP 201 A 1 
HETATM 19 N N6 AMP . A . C 2 2.566 -16.803 17.434 0.81 37.36 ? N6 AMP 201 A 1 
HETATM 20 N N1 AMP . A . C 2 2.195 -15.745 19.562 0.81 43.88 ? N1 AMP 201 A 1 
HETATM 21 C C2 AMP . A . C 2 1.946 -14.609 20.261 0.81 40.01 ? C2 AMP 201 A 1 
HETATM 22 N N3 AMP . A . C 2 1.847 -13.389 19.672 0.81 39.26 ? N3 AMP 201 A 1 
HETATM 23 C C4 AMP . A . C 2 1.987 -13.26 18.325 0.81 38.86 ? C4 AMP 201 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#