data_6YJC # _model_server_result.job_id N8mMBvnRcYOzBMF-Wru0UA _model_server_result.datetime_utc '2024-11-16 11:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6YJC # _exptl.entry_id 6YJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YJC _cell.length_a 69.14 _cell.length_b 70.29 _cell.length_c 75.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YJC _atom_sites.fract_transf_matrix[1][1] 0.014463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OSZ A 1 401 1 OSZ LIG . C 3 EDO A 1 402 401 EDO EDO . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 192 HOH HOH . D 4 HOH A 3 503 218 HOH HOH . D 4 HOH A 4 504 129 HOH HOH . D 4 HOH A 5 505 49 HOH HOH . D 4 HOH A 6 506 296 HOH HOH . D 4 HOH A 7 507 185 HOH HOH . D 4 HOH A 8 508 80 HOH HOH . D 4 HOH A 9 509 88 HOH HOH . D 4 HOH A 10 510 252 HOH HOH . D 4 HOH A 11 511 177 HOH HOH . D 4 HOH A 12 512 85 HOH HOH . D 4 HOH A 13 513 128 HOH HOH . D 4 HOH A 14 514 32 HOH HOH . D 4 HOH A 15 515 253 HOH HOH . D 4 HOH A 16 516 268 HOH HOH . D 4 HOH A 17 517 74 HOH HOH . D 4 HOH A 18 518 130 HOH HOH . D 4 HOH A 19 519 134 HOH HOH . D 4 HOH A 20 520 119 HOH HOH . D 4 HOH A 21 521 249 HOH HOH . D 4 HOH A 22 522 237 HOH HOH . D 4 HOH A 23 523 47 HOH HOH . D 4 HOH A 24 524 168 HOH HOH . D 4 HOH A 25 525 13 HOH HOH . D 4 HOH A 26 526 46 HOH HOH . D 4 HOH A 27 527 114 HOH HOH . D 4 HOH A 28 528 72 HOH HOH . D 4 HOH A 29 529 62 HOH HOH . D 4 HOH A 30 530 193 HOH HOH . D 4 HOH A 31 531 183 HOH HOH . D 4 HOH A 32 532 67 HOH HOH . D 4 HOH A 33 533 97 HOH HOH . D 4 HOH A 34 534 53 HOH HOH . D 4 HOH A 35 535 277 HOH HOH . D 4 HOH A 36 536 24 HOH HOH . D 4 HOH A 37 537 57 HOH HOH . D 4 HOH A 38 538 73 HOH HOH . D 4 HOH A 39 539 66 HOH HOH . D 4 HOH A 40 540 290 HOH HOH . D 4 HOH A 41 541 25 HOH HOH . D 4 HOH A 42 542 93 HOH HOH . D 4 HOH A 43 543 64 HOH HOH . D 4 HOH A 44 544 255 HOH HOH . D 4 HOH A 45 545 104 HOH HOH . D 4 HOH A 46 546 16 HOH HOH . D 4 HOH A 47 547 158 HOH HOH . D 4 HOH A 48 548 1 HOH HOH . D 4 HOH A 49 549 170 HOH HOH . D 4 HOH A 50 550 71 HOH HOH . D 4 HOH A 51 551 153 HOH HOH . D 4 HOH A 52 552 28 HOH HOH . D 4 HOH A 53 553 263 HOH HOH . D 4 HOH A 54 554 109 HOH HOH . D 4 HOH A 55 555 265 HOH HOH . D 4 HOH A 56 556 90 HOH HOH . D 4 HOH A 57 557 14 HOH HOH . D 4 HOH A 58 558 230 HOH HOH . D 4 HOH A 59 559 95 HOH HOH . D 4 HOH A 60 560 169 HOH HOH . D 4 HOH A 61 561 103 HOH HOH . D 4 HOH A 62 562 156 HOH HOH . D 4 HOH A 63 563 7 HOH HOH . D 4 HOH A 64 564 225 HOH HOH . D 4 HOH A 65 565 206 HOH HOH . D 4 HOH A 66 566 186 HOH HOH . D 4 HOH A 67 567 15 HOH HOH . D 4 HOH A 68 568 26 HOH HOH . D 4 HOH A 69 569 260 HOH HOH . D 4 HOH A 70 570 43 HOH HOH . D 4 HOH A 71 571 105 HOH HOH . D 4 HOH A 72 572 142 HOH HOH . D 4 HOH A 73 573 283 HOH HOH . D 4 HOH A 74 574 55 HOH HOH . D 4 HOH A 75 575 78 HOH HOH . D 4 HOH A 76 576 63 HOH HOH . D 4 HOH A 77 577 37 HOH HOH . D 4 HOH A 78 578 21 HOH HOH . D 4 HOH A 79 579 69 HOH HOH . D 4 HOH A 80 580 199 HOH HOH . D 4 HOH A 81 581 59 HOH HOH . D 4 HOH A 82 582 22 HOH HOH . D 4 HOH A 83 583 217 HOH HOH . D 4 HOH A 84 584 83 HOH HOH . D 4 HOH A 85 585 222 HOH HOH . D 4 HOH A 86 586 8 HOH HOH . D 4 HOH A 87 587 19 HOH HOH . D 4 HOH A 88 588 98 HOH HOH . D 4 HOH A 89 589 9 HOH HOH . D 4 HOH A 90 590 75 HOH HOH . D 4 HOH A 91 591 226 HOH HOH . D 4 HOH A 92 592 235 HOH HOH . D 4 HOH A 93 593 10 HOH HOH . D 4 HOH A 94 594 250 HOH HOH . D 4 HOH A 95 595 221 HOH HOH . D 4 HOH A 96 596 58 HOH HOH . D 4 HOH A 97 597 125 HOH HOH . D 4 HOH A 98 598 44 HOH HOH . D 4 HOH A 99 599 127 HOH HOH . D 4 HOH A 100 600 295 HOH HOH . D 4 HOH A 101 601 197 HOH HOH . D 4 HOH A 102 602 281 HOH HOH . D 4 HOH A 103 603 184 HOH HOH . D 4 HOH A 104 604 4 HOH HOH . D 4 HOH A 105 605 36 HOH HOH . D 4 HOH A 106 606 23 HOH HOH . D 4 HOH A 107 607 124 HOH HOH . D 4 HOH A 108 608 94 HOH HOH . D 4 HOH A 109 609 195 HOH HOH . D 4 HOH A 110 610 112 HOH HOH . D 4 HOH A 111 611 60 HOH HOH . D 4 HOH A 112 612 27 HOH HOH . D 4 HOH A 113 613 20 HOH HOH . D 4 HOH A 114 614 236 HOH HOH . D 4 HOH A 115 615 140 HOH HOH . D 4 HOH A 116 616 207 HOH HOH . D 4 HOH A 117 617 91 HOH HOH . D 4 HOH A 118 618 92 HOH HOH . D 4 HOH A 119 619 165 HOH HOH . D 4 HOH A 120 620 190 HOH HOH . D 4 HOH A 121 621 189 HOH HOH . D 4 HOH A 122 622 18 HOH HOH . D 4 HOH A 123 623 240 HOH HOH . D 4 HOH A 124 624 54 HOH HOH . D 4 HOH A 125 625 50 HOH HOH . D 4 HOH A 126 626 246 HOH HOH . D 4 HOH A 127 627 81 HOH HOH . D 4 HOH A 128 628 5 HOH HOH . D 4 HOH A 129 629 31 HOH HOH . D 4 HOH A 130 630 39 HOH HOH . D 4 HOH A 131 631 212 HOH HOH . D 4 HOH A 132 632 243 HOH HOH . D 4 HOH A 133 633 126 HOH HOH . D 4 HOH A 134 634 111 HOH HOH . D 4 HOH A 135 635 120 HOH HOH . D 4 HOH A 136 636 287 HOH HOH . D 4 HOH A 137 637 135 HOH HOH . D 4 HOH A 138 638 121 HOH HOH . D 4 HOH A 139 639 82 HOH HOH . D 4 HOH A 140 640 188 HOH HOH . D 4 HOH A 141 641 163 HOH HOH . D 4 HOH A 142 642 106 HOH HOH . D 4 HOH A 143 643 194 HOH HOH . D 4 HOH A 144 644 33 HOH HOH . D 4 HOH A 145 645 101 HOH HOH . D 4 HOH A 146 646 42 HOH HOH . D 4 HOH A 147 647 289 HOH HOH . D 4 HOH A 148 648 141 HOH HOH . D 4 HOH A 149 649 291 HOH HOH . D 4 HOH A 150 650 116 HOH HOH . D 4 HOH A 151 651 12 HOH HOH . D 4 HOH A 152 652 139 HOH HOH . D 4 HOH A 153 653 196 HOH HOH . D 4 HOH A 154 654 159 HOH HOH . D 4 HOH A 155 655 160 HOH HOH . D 4 HOH A 156 656 215 HOH HOH . D 4 HOH A 157 657 102 HOH HOH . D 4 HOH A 158 658 155 HOH HOH . D 4 HOH A 159 659 285 HOH HOH . D 4 HOH A 160 660 294 HOH HOH . D 4 HOH A 161 661 51 HOH HOH . D 4 HOH A 162 662 123 HOH HOH . D 4 HOH A 163 663 181 HOH HOH . D 4 HOH A 164 664 17 HOH HOH . D 4 HOH A 165 665 147 HOH HOH . D 4 HOH A 166 666 6 HOH HOH . D 4 HOH A 167 667 77 HOH HOH . D 4 HOH A 168 668 166 HOH HOH . D 4 HOH A 169 669 40 HOH HOH . D 4 HOH A 170 670 110 HOH HOH . D 4 HOH A 171 671 145 HOH HOH . D 4 HOH A 172 672 164 HOH HOH . D 4 HOH A 173 673 45 HOH HOH . D 4 HOH A 174 674 198 HOH HOH . D 4 HOH A 175 675 180 HOH HOH . D 4 HOH A 176 676 115 HOH HOH . D 4 HOH A 177 677 89 HOH HOH . D 4 HOH A 178 678 2 HOH HOH . D 4 HOH A 179 679 216 HOH HOH . D 4 HOH A 180 680 178 HOH HOH . D 4 HOH A 181 681 35 HOH HOH . D 4 HOH A 182 682 148 HOH HOH . D 4 HOH A 183 683 187 HOH HOH . D 4 HOH A 184 684 137 HOH HOH . D 4 HOH A 185 685 29 HOH HOH . D 4 HOH A 186 686 179 HOH HOH . D 4 HOH A 187 687 132 HOH HOH . D 4 HOH A 188 688 70 HOH HOH . D 4 HOH A 189 689 52 HOH HOH . D 4 HOH A 190 690 175 HOH HOH . D 4 HOH A 191 691 209 HOH HOH . D 4 HOH A 192 692 174 HOH HOH . D 4 HOH A 193 693 151 HOH HOH . D 4 HOH A 194 694 286 HOH HOH . D 4 HOH A 195 695 232 HOH HOH . D 4 HOH A 196 696 224 HOH HOH . D 4 HOH A 197 697 122 HOH HOH . D 4 HOH A 198 698 34 HOH HOH . D 4 HOH A 199 699 247 HOH HOH . D 4 HOH A 200 700 131 HOH HOH . D 4 HOH A 201 701 270 HOH HOH . D 4 HOH A 202 702 269 HOH HOH . D 4 HOH A 203 703 118 HOH HOH . D 4 HOH A 204 704 273 HOH HOH . D 4 HOH A 205 705 205 HOH HOH . D 4 HOH A 206 706 219 HOH HOH . D 4 HOH A 207 707 149 HOH HOH . D 4 HOH A 208 708 208 HOH HOH . D 4 HOH A 209 709 241 HOH HOH . D 4 HOH A 210 710 213 HOH HOH . D 4 HOH A 211 711 108 HOH HOH . D 4 HOH A 212 712 229 HOH HOH . D 4 HOH A 213 713 280 HOH HOH . D 4 HOH A 214 714 293 HOH HOH . D 4 HOH A 215 715 261 HOH HOH . D 4 HOH A 216 716 258 HOH HOH . D 4 HOH A 217 717 84 HOH HOH . D 4 HOH A 218 718 220 HOH HOH . D 4 HOH A 219 719 251 HOH HOH . D 4 HOH A 220 720 152 HOH HOH . D 4 HOH A 221 721 245 HOH HOH . D 4 HOH A 222 722 41 HOH HOH . D 4 HOH A 223 723 248 HOH HOH . D 4 HOH A 224 724 210 HOH HOH . D 4 HOH A 225 725 292 HOH HOH . D 4 HOH A 226 726 288 HOH HOH . D 4 HOH A 227 727 267 HOH HOH . D 4 HOH A 228 728 242 HOH HOH . D 4 HOH A 229 729 276 HOH HOH . D 4 HOH A 230 730 279 HOH HOH . D 4 HOH A 231 731 86 HOH HOH . D 4 HOH A 232 732 107 HOH HOH . D 4 HOH A 233 733 233 HOH HOH . D 4 HOH A 234 734 239 HOH HOH . D 4 HOH A 235 735 167 HOH HOH . D 4 HOH A 236 736 271 HOH HOH . D 4 HOH A 237 737 143 HOH HOH . D 4 HOH A 238 738 133 HOH HOH . D 4 HOH A 239 739 96 HOH HOH . D 4 HOH A 240 740 275 HOH HOH . D 4 HOH A 241 741 76 HOH HOH . D 4 HOH A 242 742 136 HOH HOH . D 4 HOH A 243 743 146 HOH HOH . D 4 HOH A 244 744 157 HOH HOH . D 4 HOH A 245 745 100 HOH HOH . D 4 HOH A 246 746 214 HOH HOH . D 4 HOH A 247 747 266 HOH HOH . D 4 HOH A 248 748 272 HOH HOH . D 4 HOH A 249 749 203 HOH HOH . D 4 HOH A 250 750 282 HOH HOH . D 4 HOH A 251 751 150 HOH HOH . D 4 HOH A 252 752 99 HOH HOH . D 4 HOH A 253 753 227 HOH HOH . D 4 HOH A 254 754 171 HOH HOH . D 4 HOH A 255 755 161 HOH HOH . D 4 HOH A 256 756 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 55.726 57.694 9.508 1 34.34 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 56.064 59.047 9.176 1 40.42 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 54.345 57.361 8.953 1 33.26 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 53.503 58.514 9.051 1 36.84 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #