data_6YJX # _model_server_result.job_id 27UDCXH2y1TPf59pqTt8OA _model_server_result.datetime_utc '2024-11-24 22:55:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6YJX # _exptl.entry_id 6YJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YJX _cell.length_a 79.468 _cell.length_b 79.468 _cell.length_c 37.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 F NA NA . A NA 205 1_555 I O HOH . A HOH 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc6 F NA NA . A NA 205 1_555 I O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 6YJX _atom_sites.fract_transf_matrix[1][1] 0.012584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 2 CL A 1 203 3 CL CL . E 2 CL A 1 204 4 CL CL . F 3 NA A 1 205 1 NA NA . G 4 ACT A 1 206 1 ACT ACT . H 5 EDO A 1 207 1 EDO EDO . I 6 HOH A 1 301 145 HOH HOH . I 6 HOH A 2 302 144 HOH HOH . I 6 HOH A 3 303 49 HOH HOH . I 6 HOH A 4 304 141 HOH HOH . I 6 HOH A 5 305 147 HOH HOH . I 6 HOH A 6 306 75 HOH HOH . I 6 HOH A 7 307 60 HOH HOH . I 6 HOH A 8 308 102 HOH HOH . I 6 HOH A 9 309 140 HOH HOH . I 6 HOH A 10 310 14 HOH HOH . I 6 HOH A 11 311 114 HOH HOH . I 6 HOH A 12 312 120 HOH HOH . I 6 HOH A 13 313 106 HOH HOH . I 6 HOH A 14 314 18 HOH HOH . I 6 HOH A 15 315 65 HOH HOH . I 6 HOH A 16 316 128 HOH HOH . I 6 HOH A 17 317 33 HOH HOH . I 6 HOH A 18 318 66 HOH HOH . I 6 HOH A 19 319 26 HOH HOH . I 6 HOH A 20 320 31 HOH HOH . I 6 HOH A 21 321 17 HOH HOH . I 6 HOH A 22 322 54 HOH HOH . I 6 HOH A 23 323 11 HOH HOH . I 6 HOH A 24 324 110 HOH HOH . I 6 HOH A 25 325 73 HOH HOH . I 6 HOH A 26 326 69 HOH HOH . I 6 HOH A 27 327 126 HOH HOH . I 6 HOH A 28 328 70 HOH HOH . I 6 HOH A 29 329 93 HOH HOH . I 6 HOH A 30 330 78 HOH HOH . I 6 HOH A 31 331 42 HOH HOH . I 6 HOH A 32 332 115 HOH HOH . I 6 HOH A 33 333 13 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 82 HOH HOH . I 6 HOH A 36 336 72 HOH HOH . I 6 HOH A 37 337 122 HOH HOH . I 6 HOH A 38 338 100 HOH HOH . I 6 HOH A 39 339 71 HOH HOH . I 6 HOH A 40 340 79 HOH HOH . I 6 HOH A 41 341 6 HOH HOH . I 6 HOH A 42 342 38 HOH HOH . I 6 HOH A 43 343 22 HOH HOH . I 6 HOH A 44 344 103 HOH HOH . I 6 HOH A 45 345 98 HOH HOH . I 6 HOH A 46 346 87 HOH HOH . I 6 HOH A 47 347 32 HOH HOH . I 6 HOH A 48 348 37 HOH HOH . I 6 HOH A 49 349 2 HOH HOH . I 6 HOH A 50 350 92 HOH HOH . I 6 HOH A 51 351 88 HOH HOH . I 6 HOH A 52 352 117 HOH HOH . I 6 HOH A 53 353 19 HOH HOH . I 6 HOH A 54 354 58 HOH HOH . I 6 HOH A 55 355 28 HOH HOH . I 6 HOH A 56 356 130 HOH HOH . I 6 HOH A 57 357 46 HOH HOH . I 6 HOH A 58 358 62 HOH HOH . I 6 HOH A 59 359 8 HOH HOH . I 6 HOH A 60 360 12 HOH HOH . I 6 HOH A 61 361 53 HOH HOH . I 6 HOH A 62 362 16 HOH HOH . I 6 HOH A 63 363 20 HOH HOH . I 6 HOH A 64 364 43 HOH HOH . I 6 HOH A 65 365 29 HOH HOH . I 6 HOH A 66 366 39 HOH HOH . I 6 HOH A 67 367 67 HOH HOH . I 6 HOH A 68 368 137 HOH HOH . I 6 HOH A 69 369 47 HOH HOH . I 6 HOH A 70 370 27 HOH HOH . I 6 HOH A 71 371 86 HOH HOH . I 6 HOH A 72 372 109 HOH HOH . I 6 HOH A 73 373 1 HOH HOH . I 6 HOH A 74 374 40 HOH HOH . I 6 HOH A 75 375 48 HOH HOH . I 6 HOH A 76 376 3 HOH HOH . I 6 HOH A 77 377 41 HOH HOH . I 6 HOH A 78 378 15 HOH HOH . I 6 HOH A 79 379 23 HOH HOH . I 6 HOH A 80 380 148 HOH HOH . I 6 HOH A 81 381 34 HOH HOH . I 6 HOH A 82 382 51 HOH HOH . I 6 HOH A 83 383 56 HOH HOH . I 6 HOH A 84 384 123 HOH HOH . I 6 HOH A 85 385 4 HOH HOH . I 6 HOH A 86 386 63 HOH HOH . I 6 HOH A 87 387 21 HOH HOH . I 6 HOH A 88 388 76 HOH HOH . I 6 HOH A 89 389 125 HOH HOH . I 6 HOH A 90 390 30 HOH HOH . I 6 HOH A 91 391 7 HOH HOH . I 6 HOH A 92 392 68 HOH HOH . I 6 HOH A 93 393 10 HOH HOH . I 6 HOH A 94 394 25 HOH HOH . I 6 HOH A 95 395 36 HOH HOH . I 6 HOH A 96 396 55 HOH HOH . I 6 HOH A 97 397 5 HOH HOH . I 6 HOH A 98 398 96 HOH HOH . I 6 HOH A 99 399 101 HOH HOH . I 6 HOH A 100 400 112 HOH HOH . I 6 HOH A 101 401 99 HOH HOH . I 6 HOH A 102 402 119 HOH HOH . I 6 HOH A 103 403 57 HOH HOH . I 6 HOH A 104 404 24 HOH HOH . I 6 HOH A 105 405 9 HOH HOH . I 6 HOH A 106 406 146 HOH HOH . I 6 HOH A 107 407 77 HOH HOH . I 6 HOH A 108 408 59 HOH HOH . I 6 HOH A 109 409 142 HOH HOH . I 6 HOH A 110 410 105 HOH HOH . I 6 HOH A 111 411 124 HOH HOH . I 6 HOH A 112 412 44 HOH HOH . I 6 HOH A 113 413 35 HOH HOH . I 6 HOH A 114 414 81 HOH HOH . I 6 HOH A 115 415 111 HOH HOH . I 6 HOH A 116 416 129 HOH HOH . I 6 HOH A 117 417 107 HOH HOH . I 6 HOH A 118 418 97 HOH HOH . I 6 HOH A 119 419 84 HOH HOH . I 6 HOH A 120 420 108 HOH HOH . I 6 HOH A 121 421 104 HOH HOH . I 6 HOH A 122 422 127 HOH HOH . I 6 HOH A 123 423 139 HOH HOH . I 6 HOH A 124 424 134 HOH HOH . I 6 HOH A 125 425 143 HOH HOH . I 6 HOH A 126 426 89 HOH HOH . I 6 HOH A 127 427 118 HOH HOH . I 6 HOH A 128 428 150 HOH HOH . I 6 HOH A 129 429 45 HOH HOH . I 6 HOH A 130 430 61 HOH HOH . I 6 HOH A 131 431 116 HOH HOH . I 6 HOH A 132 432 64 HOH HOH . I 6 HOH A 133 433 94 HOH HOH . I 6 HOH A 134 434 136 HOH HOH . I 6 HOH A 135 435 113 HOH HOH . I 6 HOH A 136 436 83 HOH HOH . I 6 HOH A 137 437 151 HOH HOH . I 6 HOH A 138 438 138 HOH HOH . I 6 HOH A 139 439 149 HOH HOH . I 6 HOH A 140 440 90 HOH HOH . I 6 HOH A 141 441 135 HOH HOH . I 6 HOH A 142 442 152 HOH HOH . I 6 HOH A 143 443 80 HOH HOH . I 6 HOH A 144 444 133 HOH HOH . I 6 HOH A 145 445 153 HOH HOH . I 6 HOH A 146 446 50 HOH HOH . I 6 HOH A 147 447 132 HOH HOH . I 6 HOH A 148 448 85 HOH HOH . I 6 HOH A 149 449 91 HOH HOH . I 6 HOH A 150 450 131 HOH HOH . I 6 HOH A 151 451 121 HOH HOH . I 6 HOH A 152 452 95 HOH HOH . I 6 HOH A 153 453 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 76.26 57.079 5.841 1 21.78 ? C1 EDO 207 A 1 HETATM 2 O O1 EDO . . . H 5 75.267 57.772 6.509 1 23.94 ? O1 EDO 207 A 1 HETATM 3 C C2 EDO . . . H 5 76.221 55.626 5.995 1 30.78 ? C2 EDO 207 A 1 HETATM 4 O O2 EDO . . . H 5 76.132 55.324 7.366 1 36.85 ? O2 EDO 207 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #