data_6YK1
#
_model_server_result.job_id            '_gnDb8rMbhZr3soy2RrwRA' 
_model_server_result.datetime_utc      '2024-10-18 11:21:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":505}' 
#
_entry.id    6YK1 
#
_exptl.entry_id    6YK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    26 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.64 
_cell.angle_gamma         90 
_cell.entry_id            6YK1 
_cell.length_a            279.38 
_cell.length_b            53.037 
_cell.length_c            110.149 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,QA,RA 1 1 
C,D,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,SA,TA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 GA N N 
? 6 HA N N 
? 6 IA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 MA N N 
? 6 OA N N 
? 6 PA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 179 A CYS 177 1_555 D SG CYS 179 D CYS 177 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 179 B CYS 177 1_555 C SG CYS 179 C CYS 177 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 190 n n 
C1 C2 EDO sing 191 n n 
C1 H11 EDO sing 192 n n 
C1 H12 EDO sing 193 n n 
O1 HO1 EDO sing 194 n n 
C2 O2 EDO sing 195 n n 
C2 H21 EDO sing 196 n n 
C2 H22 EDO sing 197 n n 
O2 HO2 EDO sing 198 n n 
#
_atom_sites.entry_id                     6YK1 
_atom_sites.fract_transf_matrix[1][1]    0.003579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000102 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009082 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 501 501 GOL GOL . 
F 3 PG4 A 1 502 601 PG4 PG4 . 
G 4 D95 A 1 503 1101 D95 ART . 
H 5 AGS A 1 504 1 AGS AGS . 
I 6 EDO A 1 505 1 EDO EDO . 
J 6 EDO A 1 506 4 EDO EDO . 
K 6 EDO A 1 507 5 EDO EDO . 
L 6 EDO A 1 508 8 EDO EDO . 
M 6 EDO A 1 509 15 EDO EDO . 
N 6 EDO A 1 510 16 EDO EDO . 
O 6 EDO A 1 511 17 EDO EDO . 
P 6 EDO A 1 512 22 EDO EDO . 
Q 6 EDO A 1 513 25 EDO EDO . 
R 6 EDO A 1 514 26 EDO EDO . 
S 6 EDO A 1 515 27 EDO EDO . 
T 2 GOL B 1 401 401 GOL GOL . 
U 2 GOL B 1 402 501 GOL GOL . 
V 5 AGS B 1 403 2 AGS AGS . 
W 6 EDO B 1 404 2 EDO EDO . 
X 6 EDO B 1 405 6 EDO EDO . 
Y 6 EDO B 1 406 7 EDO EDO . 
Z 6 EDO B 1 407 19 EDO EDO . 
AA 6 EDO B 1 408 28 EDO EDO . 
BA 6 EDO C 1 501 501 EDO EDO . 
CA 2 GOL C 1 502 601 GOL GOL . 
DA 2 GOL C 1 503 801 GOL GOL . 
EA 2 GOL C 1 504 901 GOL GOL . 
FA 5 AGS C 1 505 3 AGS AGS . 
GA 6 EDO C 1 506 9 EDO EDO . 
HA 6 EDO C 1 507 10 EDO EDO . 
IA 6 EDO C 1 508 18 EDO EDO . 
JA 6 EDO C 1 509 21 EDO EDO . 
KA 6 EDO C 1 510 29 EDO EDO . 
LA 6 EDO C 1 511 30 EDO EDO . 
MA 6 EDO D 1 401 401 EDO EDO . 
NA 5 AGS D 1 402 4 AGS AGS . 
OA 6 EDO D 1 403 3 EDO EDO . 
PA 6 EDO D 1 404 24 EDO EDO . 
QA 7 HOH A 1 601 19 HOH HOH . 
QA 7 HOH A 2 602 15 HOH HOH . 
QA 7 HOH A 3 603 60 HOH HOH . 
QA 7 HOH A 4 604 25 HOH HOH . 
QA 7 HOH A 5 605 1 HOH HOH . 
QA 7 HOH A 6 606 151 HOH HOH . 
QA 7 HOH A 7 607 20 HOH HOH . 
QA 7 HOH A 8 608 12 HOH HOH . 
QA 7 HOH A 9 609 5 HOH HOH . 
QA 7 HOH A 10 610 40 HOH HOH . 
QA 7 HOH A 11 611 163 HOH HOH . 
QA 7 HOH A 12 612 144 HOH HOH . 
QA 7 HOH A 13 613 13 HOH HOH . 
QA 7 HOH A 14 614 176 HOH HOH . 
QA 7 HOH A 15 615 199 HOH HOH . 
QA 7 HOH A 16 616 190 HOH HOH . 
QA 7 HOH A 17 617 142 HOH HOH . 
QA 7 HOH A 18 618 57 HOH HOH . 
QA 7 HOH A 19 619 140 HOH HOH . 
QA 7 HOH A 20 620 51 HOH HOH . 
QA 7 HOH A 21 621 47 HOH HOH . 
QA 7 HOH A 22 622 7 HOH HOH . 
QA 7 HOH A 23 623 52 HOH HOH . 
QA 7 HOH A 24 624 54 HOH HOH . 
QA 7 HOH A 25 625 44 HOH HOH . 
QA 7 HOH A 26 626 162 HOH HOH . 
QA 7 HOH A 27 627 49 HOH HOH . 
QA 7 HOH A 28 628 177 HOH HOH . 
QA 7 HOH A 29 629 179 HOH HOH . 
QA 7 HOH A 30 630 180 HOH HOH . 
QA 7 HOH A 31 631 50 HOH HOH . 
QA 7 HOH A 32 632 43 HOH HOH . 
QA 7 HOH A 33 633 59 HOH HOH . 
QA 7 HOH A 34 634 126 HOH HOH . 
QA 7 HOH A 35 635 55 HOH HOH . 
QA 7 HOH A 36 636 62 HOH HOH . 
QA 7 HOH A 37 637 65 HOH HOH . 
QA 7 HOH A 38 638 91 HOH HOH . 
QA 7 HOH A 39 639 66 HOH HOH . 
QA 7 HOH A 40 640 53 HOH HOH . 
QA 7 HOH A 41 641 201 HOH HOH . 
RA 7 HOH B 1 501 4 HOH HOH . 
RA 7 HOH B 2 502 21 HOH HOH . 
RA 7 HOH B 3 503 132 HOH HOH . 
RA 7 HOH B 4 504 14 HOH HOH . 
RA 7 HOH B 5 505 150 HOH HOH . 
RA 7 HOH B 6 506 18 HOH HOH . 
RA 7 HOH B 7 507 17 HOH HOH . 
RA 7 HOH B 8 508 164 HOH HOH . 
RA 7 HOH B 9 509 42 HOH HOH . 
RA 7 HOH B 10 510 27 HOH HOH . 
RA 7 HOH B 11 511 143 HOH HOH . 
RA 7 HOH B 12 512 6 HOH HOH . 
RA 7 HOH B 13 513 85 HOH HOH . 
RA 7 HOH B 14 514 9 HOH HOH . 
RA 7 HOH B 15 515 161 HOH HOH . 
RA 7 HOH B 16 516 10 HOH HOH . 
RA 7 HOH B 17 517 29 HOH HOH . 
RA 7 HOH B 18 518 135 HOH HOH . 
RA 7 HOH B 19 519 26 HOH HOH . 
RA 7 HOH B 20 520 34 HOH HOH . 
RA 7 HOH B 21 521 195 HOH HOH . 
RA 7 HOH B 22 522 149 HOH HOH . 
RA 7 HOH B 23 523 16 HOH HOH . 
RA 7 HOH B 24 524 11 HOH HOH . 
RA 7 HOH B 25 525 159 HOH HOH . 
RA 7 HOH B 26 526 131 HOH HOH . 
RA 7 HOH B 27 527 133 HOH HOH . 
RA 7 HOH B 28 528 22 HOH HOH . 
RA 7 HOH B 29 529 137 HOH HOH . 
RA 7 HOH B 30 530 87 HOH HOH . 
RA 7 HOH B 31 531 148 HOH HOH . 
RA 7 HOH B 32 532 165 HOH HOH . 
RA 7 HOH B 33 533 181 HOH HOH . 
RA 7 HOH B 34 534 155 HOH HOH . 
RA 7 HOH B 35 535 153 HOH HOH . 
RA 7 HOH B 36 536 171 HOH HOH . 
RA 7 HOH B 37 537 67 HOH HOH . 
RA 7 HOH B 38 538 160 HOH HOH . 
RA 7 HOH B 39 539 186 HOH HOH . 
RA 7 HOH B 40 540 69 HOH HOH . 
RA 7 HOH B 41 541 156 HOH HOH . 
RA 7 HOH B 42 542 84 HOH HOH . 
RA 7 HOH B 43 543 189 HOH HOH . 
RA 7 HOH B 44 544 93 HOH HOH . 
RA 7 HOH B 45 545 198 HOH HOH . 
RA 7 HOH B 46 546 83 HOH HOH . 
RA 7 HOH B 47 547 158 HOH HOH . 
RA 7 HOH B 48 548 82 HOH HOH . 
RA 7 HOH B 49 549 94 HOH HOH . 
RA 7 HOH B 50 550 167 HOH HOH . 
RA 7 HOH B 51 551 197 HOH HOH . 
RA 7 HOH B 52 552 136 HOH HOH . 
RA 7 HOH B 53 553 68 HOH HOH . 
RA 7 HOH B 54 554 90 HOH HOH . 
RA 7 HOH B 55 555 172 HOH HOH . 
RA 7 HOH B 56 556 95 HOH HOH . 
RA 7 HOH B 57 557 134 HOH HOH . 
RA 7 HOH B 58 558 88 HOH HOH . 
RA 7 HOH B 59 559 188 HOH HOH . 
RA 7 HOH B 60 560 194 HOH HOH . 
SA 7 HOH C 1 601 183 HOH HOH . 
SA 7 HOH C 2 602 97 HOH HOH . 
SA 7 HOH C 3 603 32 HOH HOH . 
SA 7 HOH C 4 604 80 HOH HOH . 
SA 7 HOH C 5 605 120 HOH HOH . 
SA 7 HOH C 6 606 200 HOH HOH . 
SA 7 HOH C 7 607 31 HOH HOH . 
SA 7 HOH C 8 608 2 HOH HOH . 
SA 7 HOH C 9 609 101 HOH HOH . 
SA 7 HOH C 10 610 119 HOH HOH . 
SA 7 HOH C 11 611 70 HOH HOH . 
SA 7 HOH C 12 612 98 HOH HOH . 
SA 7 HOH C 13 613 193 HOH HOH . 
SA 7 HOH C 14 614 173 HOH HOH . 
SA 7 HOH C 15 615 104 HOH HOH . 
SA 7 HOH C 16 616 202 HOH HOH . 
SA 7 HOH C 17 617 111 HOH HOH . 
SA 7 HOH C 18 618 168 HOH HOH . 
SA 7 HOH C 19 619 33 HOH HOH . 
SA 7 HOH C 20 620 124 HOH HOH . 
SA 7 HOH C 21 621 129 HOH HOH . 
SA 7 HOH C 22 622 71 HOH HOH . 
SA 7 HOH C 23 623 125 HOH HOH . 
SA 7 HOH C 24 624 192 HOH HOH . 
SA 7 HOH C 25 625 92 HOH HOH . 
SA 7 HOH C 26 626 106 HOH HOH . 
TA 7 HOH D 1 501 72 HOH HOH . 
TA 7 HOH D 2 502 30 HOH HOH . 
TA 7 HOH D 3 503 110 HOH HOH . 
TA 7 HOH D 4 504 117 HOH HOH . 
TA 7 HOH D 5 505 112 HOH HOH . 
TA 7 HOH D 6 506 123 HOH HOH . 
TA 7 HOH D 7 507 203 HOH HOH . 
TA 7 HOH D 8 508 108 HOH HOH . 
TA 7 HOH D 9 509 74 HOH HOH . 
TA 7 HOH D 10 510 73 HOH HOH . 
TA 7 HOH D 11 511 184 HOH HOH . 
TA 7 HOH D 12 512 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 6 22.068 -55.575 15.734 1 95.67 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . I 6 20.814 -56.057 16.233 1 88.51 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . I 6 22.749 -54.722 16.798 1 94.04 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . I 6 23.001 -55.514 17.964 1 89.84 ? O2 EDO 505 A 1 
HETATM 5 H H11 EDO . . . I 6 21.904 -54.982 14.832 1 114.97 ? H11 EDO 505 A 1 
HETATM 6 H H12 EDO . . . I 6 22.709 -56.419 15.469 1 114.97 ? H12 EDO 505 A 1 
HETATM 7 H HO1 EDO . . . I 6 20.384 -56.597 15.556 1 106.38 ? HO1 EDO 505 A 1 
HETATM 8 H H21 EDO . . . I 6 22.112 -53.874 17.056 1 113.01 ? H21 EDO 505 A 1 
HETATM 9 H H22 EDO . . . I 6 23.69 -54.327 16.408 1 113.01 ? H22 EDO 505 A 1 
HETATM 10 H HO2 EDO . . . I 6 23.421 -54.966 18.641 1 107.97 ? HO2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#