data_6YKG
#
_model_server_result.job_id            oPwlcA2yPD-oEWS1EU9Zzw 
_model_server_result.datetime_utc      '2024-11-22 17:10:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ykg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    6YKG 
#
_exptl.entry_id    6YKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.431 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-morpholin-4-yl-6-[(2~{R})-2-(phenylmethyl)pyrrolidin-1-yl]-1~{H}-pyridin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YKG 
_cell.length_a            79.864 
_cell.length_b            168.115 
_cell.length_c            61.692 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H25 N3 O2' 
_chem_comp.formula_weight    339.431 
_chem_comp.id                OZ8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-morpholin-4-yl-6-[(2~{R})-2-(phenylmethyl)pyrrolidin-1-yl]-1~{H}-pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 OZ8 sing 237 n n 
C10 C9 OZ8 sing 238 n n 
C11 N12 OZ8 sing 239 n n 
C9 C8 OZ8 sing 240 n n 
N12 C13 OZ8 sing 241 n n 
N12 C8 OZ8 sing 242 n n 
N14 C13 OZ8 sing 243 n n 
N14 C15 OZ8 sing 244 n n 
C13 C18 OZ8 doub 245 n n 
O25 C15 OZ8 doub 246 n n 
C15 C16 OZ8 sing 247 n n 
C8 C1 OZ8 sing 248 n n 
C18 C17 OZ8 sing 249 n n 
C16 C17 OZ8 doub 250 n n 
C17 N19 OZ8 sing 251 n n 
C20 N19 OZ8 sing 252 n n 
C20 C21 OZ8 sing 253 n n 
N19 C24 OZ8 sing 254 n n 
C24 C23 OZ8 sing 255 n n 
C1 C2 OZ8 sing 256 n n 
C7 C2 OZ8 doub 257 n y 
C7 C6 OZ8 sing 258 n y 
C21 O22 OZ8 sing 259 n n 
O22 C23 OZ8 sing 260 n n 
C2 C3 OZ8 sing 261 n y 
C6 C5 OZ8 doub 262 n y 
C3 C4 OZ8 doub 263 n y 
C5 C4 OZ8 sing 264 n y 
C1 H12 OZ8 sing 265 n n 
C1 H1 OZ8 sing 266 n n 
C3 H3 OZ8 sing 267 n n 
C4 H4 OZ8 sing 268 n n 
C5 H5 OZ8 sing 269 n n 
C7 H7 OZ8 sing 270 n n 
C9 H9 OZ8 sing 271 n n 
C9 H91 OZ8 sing 272 n n 
C6 H6 OZ8 sing 273 n n 
C8 H8 OZ8 sing 274 n n 
C10 H101 OZ8 sing 275 n n 
C10 H10 OZ8 sing 276 n n 
C11 H11 OZ8 sing 277 n n 
C11 H111 OZ8 sing 278 n n 
N14 HN14 OZ8 sing 279 n n 
C16 H16 OZ8 sing 280 n n 
C18 H18 OZ8 sing 281 n n 
C20 H201 OZ8 sing 282 n n 
C20 H20 OZ8 sing 283 n n 
C21 H21 OZ8 sing 284 n n 
C21 H211 OZ8 sing 285 n n 
C23 H231 OZ8 sing 286 n n 
C23 H23 OZ8 sing 287 n n 
C24 H24 OZ8 sing 288 n n 
C24 H241 OZ8 sing 289 n n 
#
_atom_sites.entry_id                     6YKG 
_atom_sites.fract_transf_matrix[1][1]    0.012521 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01621 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OZ8 AAA 1 901 1 OZ8 275 . 
C 3 HOH AAA 1 1001 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OZ8 . . . B 2 15.833 11.328 78.772 1 44.75 ? C1 OZ8 901 AAA 1 
HETATM 2 C C2 OZ8 . . . B 2 15.702 9.899 79.25 1 44.15 ? C2 OZ8 901 AAA 1 
HETATM 3 C C3 OZ8 . . . B 2 16.689 9.341 80.055 1 43.85 ? C3 OZ8 901 AAA 1 
HETATM 4 C C4 OZ8 . . . B 2 16.571 8.027 80.497 1 43.29 ? C4 OZ8 901 AAA 1 
HETATM 5 C C5 OZ8 . . . B 2 15.463 7.269 80.135 1 43.13 ? C5 OZ8 901 AAA 1 
HETATM 6 C C7 OZ8 . . . B 2 14.594 9.14 78.89 1 43.53 ? C7 OZ8 901 AAA 1 
HETATM 7 C C9 OZ8 . . . B 2 14.46 11.813 76.734 1 46.31 ? C9 OZ8 901 AAA 1 
HETATM 8 C C6 OZ8 . . . B 2 14.475 7.827 79.331 1 43.64 ? C6 OZ8 901 AAA 1 
HETATM 9 C C8 OZ8 . . . B 2 15.825 11.369 77.248 1 45.2 ? C8 OZ8 901 AAA 1 
HETATM 10 C C10 OZ8 . . . B 2 14.784 12.774 75.598 1 46.56 ? C10 OZ8 901 AAA 1 
HETATM 11 C C11 OZ8 . . . B 2 16.06 13.455 76.054 1 46.17 ? C11 OZ8 901 AAA 1 
HETATM 12 N N12 OZ8 . . . B 2 16.744 12.447 76.861 1 45.4 ? N12 OZ8 901 AAA 1 
HETATM 13 C C13 OZ8 . . . B 2 18.125 12.566 77.1 1 45.06 ? C13 OZ8 901 AAA 1 
HETATM 14 N N14 OZ8 . . . B 2 18.727 13.759 77.027 1 44.62 ? N14 OZ8 901 AAA 1 
HETATM 15 C C15 OZ8 . . . B 2 20.042 13.88 77.242 1 45.16 ? C15 OZ8 901 AAA 1 
HETATM 16 C C16 OZ8 . . . B 2 20.818 12.766 77.545 1 46.6 ? C16 OZ8 901 AAA 1 
HETATM 17 C C17 OZ8 . . . B 2 20.219 11.514 77.647 1 45.94 ? C17 OZ8 901 AAA 1 
HETATM 18 C C18 OZ8 . . . B 2 18.857 11.418 77.386 1 45.44 ? C18 OZ8 901 AAA 1 
HETATM 19 N N19 OZ8 . . . B 2 20.979 10.357 77.881 1 45.03 ? N19 OZ8 901 AAA 1 
HETATM 20 C C20 OZ8 . . . B 2 22.425 10.38 77.699 1 44.69 ? C20 OZ8 901 AAA 1 
HETATM 21 C C21 OZ8 . . . B 2 23.051 9.712 78.917 1 44.09 ? C21 OZ8 901 AAA 1 
HETATM 22 O O22 OZ8 . . . B 2 22.481 8.418 79.088 1 43.22 ? O22 OZ8 901 AAA 1 
HETATM 23 C C23 OZ8 . . . B 2 21.105 8.522 79.438 1 44.19 ? C23 OZ8 901 AAA 1 
HETATM 24 C C24 OZ8 . . . B 2 20.315 9.124 78.283 1 44.1 ? C24 OZ8 901 AAA 1 
HETATM 25 O O25 OZ8 . . . B 2 20.574 15.008 77.169 1 44.4 ? O25 OZ8 901 AAA 1 
HETATM 26 H H12 OZ8 . . . B 2 14.997 11.916 79.152 1 44.75 ? H12 OZ8 901 AAA 1 
HETATM 27 H H1 OZ8 . . . B 2 16.77 11.749 79.138 1 44.75 ? H1 OZ8 901 AAA 1 
HETATM 28 H H3 OZ8 . . . B 2 17.552 9.932 80.337 1 43.85 ? H3 OZ8 901 AAA 1 
HETATM 29 H H4 OZ8 . . . B 2 17.342 7.595 81.123 1 43.29 ? H4 OZ8 901 AAA 1 
HETATM 30 H H5 OZ8 . . . B 2 15.369 6.246 80.478 1 43.13 ? H5 OZ8 901 AAA 1 
HETATM 31 H H7 OZ8 . . . B 2 13.822 9.572 78.266 1 43.53 ? H7 OZ8 901 AAA 1 
HETATM 32 H H9 OZ8 . . . B 2 13.877 10.977 76.348 1 46.31 ? H9 OZ8 901 AAA 1 
HETATM 33 H H91 OZ8 . . . B 2 13.885 12.335 77.499 1 46.31 ? H91 OZ8 901 AAA 1 
HETATM 34 H H6 OZ8 . . . B 2 13.611 7.237 79.05 1 43.64 ? H6 OZ8 901 AAA 1 
HETATM 35 H H8 OZ8 . . . B 2 16.047 10.367 76.853 1 45.2 ? H8 OZ8 901 AAA 1 
HETATM 36 H H101 OZ8 . . . B 2 14.924 12.211 74.675 1 46.56 ? H101 OZ8 901 AAA 1 
HETATM 37 H H10 OZ8 . . . B 2 13.962 13.479 75.473 1 46.56 ? H10 OZ8 901 AAA 1 
HETATM 38 H H11 OZ8 . . . B 2 15.81 14.342 76.637 1 46.17 ? H11 OZ8 901 AAA 1 
HETATM 39 H H111 OZ8 . . . B 2 16.648 13.746 75.183 1 46.17 ? H111 OZ8 901 AAA 1 
HETATM 40 H HN14 OZ8 . . . B 2 18.158 14.599 76.799 1 44.62 ? HN14 OZ8 901 AAA 1 
HETATM 41 H H16 OZ8 . . . B 2 21.881 12.877 77.717 1 46.6 ? H16 OZ8 901 AAA 1 
HETATM 42 H H18 OZ8 . . . B 2 18.358 10.459 77.456 1 45.44 ? H18 OZ8 901 AAA 1 
HETATM 43 H H201 OZ8 . . . B 2 22.783 11.407 77.624 1 44.69 ? H201 OZ8 901 AAA 1 
HETATM 44 H H20 OZ8 . . . B 2 22.704 9.831 76.8 1 44.69 ? H20 OZ8 901 AAA 1 
HETATM 45 H H21 OZ8 . . . B 2 22.857 10.317 79.803 1 44.09 ? H21 OZ8 901 AAA 1 
HETATM 46 H H211 OZ8 . . . B 2 24.127 9.62 78.768 1 44.09 ? H211 OZ8 901 AAA 1 
HETATM 47 H H231 OZ8 . . . B 2 20.711 7.531 79.662 1 44.19 ? H231 OZ8 901 AAA 1 
HETATM 48 H H23 OZ8 . . . B 2 21 9.161 80.315 1 44.19 ? H23 OZ8 901 AAA 1 
HETATM 49 H H24 OZ8 . . . B 2 20.332 8.414 77.453 1 44.1 ? H24 OZ8 901 AAA 1 
HETATM 50 H H241 OZ8 . . . B 2 19.309 9.353 78.642 1 44.1 ? H241 OZ8 901 AAA 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           50 
#