data_6YKG # _model_server_result.job_id 2TLsVchpKV6JQ2n8LJ2l6g _model_server_result.datetime_utc '2024-11-13 10:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ykg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6YKG # _exptl.entry_id 6YKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-morpholin-4-yl-6-[(2~{R})-2-(phenylmethyl)pyrrolidin-1-yl]-1~{H}-pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YKG _cell.length_a 79.864 _cell.length_b 168.115 _cell.length_c 61.692 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 N3 O2' _chem_comp.formula_weight 339.431 _chem_comp.id OZ8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-morpholin-4-yl-6-[(2~{R})-2-(phenylmethyl)pyrrolidin-1-yl]-1~{H}-pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 OZ8 sing 237 n n C10 C9 OZ8 sing 238 n n C11 N12 OZ8 sing 239 n n C9 C8 OZ8 sing 240 n n N12 C13 OZ8 sing 241 n n N12 C8 OZ8 sing 242 n n N14 C13 OZ8 sing 243 n n N14 C15 OZ8 sing 244 n n C13 C18 OZ8 doub 245 n n O25 C15 OZ8 doub 246 n n C15 C16 OZ8 sing 247 n n C8 C1 OZ8 sing 248 n n C18 C17 OZ8 sing 249 n n C16 C17 OZ8 doub 250 n n C17 N19 OZ8 sing 251 n n C20 N19 OZ8 sing 252 n n C20 C21 OZ8 sing 253 n n N19 C24 OZ8 sing 254 n n C24 C23 OZ8 sing 255 n n C1 C2 OZ8 sing 256 n n C7 C2 OZ8 doub 257 n y C7 C6 OZ8 sing 258 n y C21 O22 OZ8 sing 259 n n O22 C23 OZ8 sing 260 n n C2 C3 OZ8 sing 261 n y C6 C5 OZ8 doub 262 n y C3 C4 OZ8 doub 263 n y C5 C4 OZ8 sing 264 n y C1 H12 OZ8 sing 265 n n C1 H1 OZ8 sing 266 n n C3 H3 OZ8 sing 267 n n C4 H4 OZ8 sing 268 n n C5 H5 OZ8 sing 269 n n C7 H7 OZ8 sing 270 n n C9 H9 OZ8 sing 271 n n C9 H91 OZ8 sing 272 n n C6 H6 OZ8 sing 273 n n C8 H8 OZ8 sing 274 n n C10 H101 OZ8 sing 275 n n C10 H10 OZ8 sing 276 n n C11 H11 OZ8 sing 277 n n C11 H111 OZ8 sing 278 n n N14 HN14 OZ8 sing 279 n n C16 H16 OZ8 sing 280 n n C18 H18 OZ8 sing 281 n n C20 H201 OZ8 sing 282 n n C20 H20 OZ8 sing 283 n n C21 H21 OZ8 sing 284 n n C21 H211 OZ8 sing 285 n n C23 H231 OZ8 sing 286 n n C23 H23 OZ8 sing 287 n n C24 H24 OZ8 sing 288 n n C24 H241 OZ8 sing 289 n n # _atom_sites.entry_id 6YKG _atom_sites.fract_transf_matrix[1][1] 0.012521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OZ8 AAA 1 901 1 OZ8 275 . C 3 HOH AAA 1 1001 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OZ8 . . . B 2 15.833 11.328 78.772 1 44.75 ? C1 OZ8 901 AAA 1 HETATM 2 C C2 OZ8 . . . B 2 15.702 9.899 79.25 1 44.15 ? C2 OZ8 901 AAA 1 HETATM 3 C C3 OZ8 . . . B 2 16.689 9.341 80.055 1 43.85 ? C3 OZ8 901 AAA 1 HETATM 4 C C4 OZ8 . . . B 2 16.571 8.027 80.497 1 43.29 ? C4 OZ8 901 AAA 1 HETATM 5 C C5 OZ8 . . . B 2 15.463 7.269 80.135 1 43.13 ? C5 OZ8 901 AAA 1 HETATM 6 C C7 OZ8 . . . B 2 14.594 9.14 78.89 1 43.53 ? C7 OZ8 901 AAA 1 HETATM 7 C C9 OZ8 . . . B 2 14.46 11.813 76.734 1 46.31 ? C9 OZ8 901 AAA 1 HETATM 8 C C6 OZ8 . . . B 2 14.475 7.827 79.331 1 43.64 ? C6 OZ8 901 AAA 1 HETATM 9 C C8 OZ8 . . . B 2 15.825 11.369 77.248 1 45.2 ? C8 OZ8 901 AAA 1 HETATM 10 C C10 OZ8 . . . B 2 14.784 12.774 75.598 1 46.56 ? C10 OZ8 901 AAA 1 HETATM 11 C C11 OZ8 . . . B 2 16.06 13.455 76.054 1 46.17 ? C11 OZ8 901 AAA 1 HETATM 12 N N12 OZ8 . . . B 2 16.744 12.447 76.861 1 45.4 ? N12 OZ8 901 AAA 1 HETATM 13 C C13 OZ8 . . . B 2 18.125 12.566 77.1 1 45.06 ? C13 OZ8 901 AAA 1 HETATM 14 N N14 OZ8 . . . B 2 18.727 13.759 77.027 1 44.62 ? N14 OZ8 901 AAA 1 HETATM 15 C C15 OZ8 . . . B 2 20.042 13.88 77.242 1 45.16 ? C15 OZ8 901 AAA 1 HETATM 16 C C16 OZ8 . . . B 2 20.818 12.766 77.545 1 46.6 ? C16 OZ8 901 AAA 1 HETATM 17 C C17 OZ8 . . . B 2 20.219 11.514 77.647 1 45.94 ? C17 OZ8 901 AAA 1 HETATM 18 C C18 OZ8 . . . B 2 18.857 11.418 77.386 1 45.44 ? C18 OZ8 901 AAA 1 HETATM 19 N N19 OZ8 . . . B 2 20.979 10.357 77.881 1 45.03 ? N19 OZ8 901 AAA 1 HETATM 20 C C20 OZ8 . . . B 2 22.425 10.38 77.699 1 44.69 ? C20 OZ8 901 AAA 1 HETATM 21 C C21 OZ8 . . . B 2 23.051 9.712 78.917 1 44.09 ? C21 OZ8 901 AAA 1 HETATM 22 O O22 OZ8 . . . B 2 22.481 8.418 79.088 1 43.22 ? O22 OZ8 901 AAA 1 HETATM 23 C C23 OZ8 . . . B 2 21.105 8.522 79.438 1 44.19 ? C23 OZ8 901 AAA 1 HETATM 24 C C24 OZ8 . . . B 2 20.315 9.124 78.283 1 44.1 ? C24 OZ8 901 AAA 1 HETATM 25 O O25 OZ8 . . . B 2 20.574 15.008 77.169 1 44.4 ? O25 OZ8 901 AAA 1 HETATM 26 H H12 OZ8 . . . B 2 14.997 11.916 79.152 1 44.75 ? H12 OZ8 901 AAA 1 HETATM 27 H H1 OZ8 . . . B 2 16.77 11.749 79.138 1 44.75 ? H1 OZ8 901 AAA 1 HETATM 28 H H3 OZ8 . . . B 2 17.552 9.932 80.337 1 43.85 ? H3 OZ8 901 AAA 1 HETATM 29 H H4 OZ8 . . . B 2 17.342 7.595 81.123 1 43.29 ? H4 OZ8 901 AAA 1 HETATM 30 H H5 OZ8 . . . B 2 15.369 6.246 80.478 1 43.13 ? H5 OZ8 901 AAA 1 HETATM 31 H H7 OZ8 . . . B 2 13.822 9.572 78.266 1 43.53 ? H7 OZ8 901 AAA 1 HETATM 32 H H9 OZ8 . . . B 2 13.877 10.977 76.348 1 46.31 ? H9 OZ8 901 AAA 1 HETATM 33 H H91 OZ8 . . . B 2 13.885 12.335 77.499 1 46.31 ? H91 OZ8 901 AAA 1 HETATM 34 H H6 OZ8 . . . B 2 13.611 7.237 79.05 1 43.64 ? H6 OZ8 901 AAA 1 HETATM 35 H H8 OZ8 . . . B 2 16.047 10.367 76.853 1 45.2 ? H8 OZ8 901 AAA 1 HETATM 36 H H101 OZ8 . . . B 2 14.924 12.211 74.675 1 46.56 ? H101 OZ8 901 AAA 1 HETATM 37 H H10 OZ8 . . . B 2 13.962 13.479 75.473 1 46.56 ? H10 OZ8 901 AAA 1 HETATM 38 H H11 OZ8 . . . B 2 15.81 14.342 76.637 1 46.17 ? H11 OZ8 901 AAA 1 HETATM 39 H H111 OZ8 . . . B 2 16.648 13.746 75.183 1 46.17 ? H111 OZ8 901 AAA 1 HETATM 40 H HN14 OZ8 . . . B 2 18.158 14.599 76.799 1 44.62 ? HN14 OZ8 901 AAA 1 HETATM 41 H H16 OZ8 . . . B 2 21.881 12.877 77.717 1 46.6 ? H16 OZ8 901 AAA 1 HETATM 42 H H18 OZ8 . . . B 2 18.358 10.459 77.456 1 45.44 ? H18 OZ8 901 AAA 1 HETATM 43 H H201 OZ8 . . . B 2 22.783 11.407 77.624 1 44.69 ? H201 OZ8 901 AAA 1 HETATM 44 H H20 OZ8 . . . B 2 22.704 9.831 76.8 1 44.69 ? H20 OZ8 901 AAA 1 HETATM 45 H H21 OZ8 . . . B 2 22.857 10.317 79.803 1 44.09 ? H21 OZ8 901 AAA 1 HETATM 46 H H211 OZ8 . . . B 2 24.127 9.62 78.768 1 44.09 ? H211 OZ8 901 AAA 1 HETATM 47 H H231 OZ8 . . . B 2 20.711 7.531 79.662 1 44.19 ? H231 OZ8 901 AAA 1 HETATM 48 H H23 OZ8 . . . B 2 21 9.161 80.315 1 44.19 ? H23 OZ8 901 AAA 1 HETATM 49 H H24 OZ8 . . . B 2 20.332 8.414 77.453 1 44.1 ? H24 OZ8 901 AAA 1 HETATM 50 H H241 OZ8 . . . B 2 19.309 9.353 78.642 1 44.1 ? H241 OZ8 901 AAA 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 50 #