data_6YKO # _model_server_result.job_id gfoUZA5zwdhMKUnaS6SRJw _model_server_result.datetime_utc '2024-10-18 16:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1105}' # _entry.id 6YKO # _exptl.entry_id 6YKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YKO _cell.length_a 49.536 _cell.length_b 81.058 _cell.length_c 225.181 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 E ZN ZN . A ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 E ZN ZN . A ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 E ZN ZN . A ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 E ZN ZN . A ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 F MG MG . A MG 1105 1_555 G O HOH . A HOH 1286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 F MG MG . A MG 1105 1_555 G O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc7 F MG MG . A MG 1105 1_555 G O HOH . A HOH 1389 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 F MG MG . A MG 1105 1_555 G O HOH . A HOH 1390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc9 F MG MG . A MG 1105 1_555 G O HOH . A HOH 1406 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YKO _atom_sites.fract_transf_matrix[1][1] 0.020187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OW5 A 1 1101 1101 OW5 D10 . C 3 EDO A 1 1102 1201 EDO EDO . D 3 EDO A 1 1103 1301 EDO EDO . E 4 ZN A 1 1104 1 ZN ZN . F 5 MG A 1 1105 1 MG MG . G 6 HOH A 1 1201 205 HOH HOH . G 6 HOH A 2 1202 115 HOH HOH . G 6 HOH A 3 1203 224 HOH HOH . G 6 HOH A 4 1204 131 HOH HOH . G 6 HOH A 5 1205 85 HOH HOH . G 6 HOH A 6 1206 84 HOH HOH . G 6 HOH A 7 1207 33 HOH HOH . G 6 HOH A 8 1208 109 HOH HOH . G 6 HOH A 9 1209 213 HOH HOH . G 6 HOH A 10 1210 126 HOH HOH . G 6 HOH A 11 1211 94 HOH HOH . G 6 HOH A 12 1212 5 HOH HOH . G 6 HOH A 13 1213 14 HOH HOH . G 6 HOH A 14 1214 69 HOH HOH . G 6 HOH A 15 1215 65 HOH HOH . G 6 HOH A 16 1216 228 HOH HOH . G 6 HOH A 17 1217 102 HOH HOH . G 6 HOH A 18 1218 64 HOH HOH . G 6 HOH A 19 1219 11 HOH HOH . G 6 HOH A 20 1220 88 HOH HOH . G 6 HOH A 21 1221 15 HOH HOH . G 6 HOH A 22 1222 121 HOH HOH . G 6 HOH A 23 1223 38 HOH HOH . G 6 HOH A 24 1224 41 HOH HOH . G 6 HOH A 25 1225 107 HOH HOH . G 6 HOH A 26 1226 44 HOH HOH . G 6 HOH A 27 1227 1 HOH HOH . G 6 HOH A 28 1228 23 HOH HOH . G 6 HOH A 29 1229 16 HOH HOH . G 6 HOH A 30 1230 80 HOH HOH . G 6 HOH A 31 1231 72 HOH HOH . G 6 HOH A 32 1232 90 HOH HOH . G 6 HOH A 33 1233 82 HOH HOH . G 6 HOH A 34 1234 18 HOH HOH . G 6 HOH A 35 1235 13 HOH HOH . G 6 HOH A 36 1236 53 HOH HOH . G 6 HOH A 37 1237 34 HOH HOH . G 6 HOH A 38 1238 93 HOH HOH . G 6 HOH A 39 1239 149 HOH HOH . G 6 HOH A 40 1240 139 HOH HOH . G 6 HOH A 41 1241 219 HOH HOH . G 6 HOH A 42 1242 28 HOH HOH . G 6 HOH A 43 1243 17 HOH HOH . G 6 HOH A 44 1244 159 HOH HOH . G 6 HOH A 45 1245 245 HOH HOH . G 6 HOH A 46 1246 55 HOH HOH . G 6 HOH A 47 1247 2 HOH HOH . G 6 HOH A 48 1248 25 HOH HOH . G 6 HOH A 49 1249 10 HOH HOH . G 6 HOH A 50 1250 39 HOH HOH . G 6 HOH A 51 1251 58 HOH HOH . G 6 HOH A 52 1252 130 HOH HOH . G 6 HOH A 53 1253 100 HOH HOH . G 6 HOH A 54 1254 83 HOH HOH . G 6 HOH A 55 1255 61 HOH HOH . G 6 HOH A 56 1256 66 HOH HOH . G 6 HOH A 57 1257 31 HOH HOH . G 6 HOH A 58 1258 129 HOH HOH . G 6 HOH A 59 1259 81 HOH HOH . G 6 HOH A 60 1260 120 HOH HOH . G 6 HOH A 61 1261 86 HOH HOH . G 6 HOH A 62 1262 71 HOH HOH . G 6 HOH A 63 1263 227 HOH HOH . G 6 HOH A 64 1264 108 HOH HOH . G 6 HOH A 65 1265 67 HOH HOH . G 6 HOH A 66 1266 203 HOH HOH . G 6 HOH A 67 1267 45 HOH HOH . G 6 HOH A 68 1268 104 HOH HOH . G 6 HOH A 69 1269 32 HOH HOH . G 6 HOH A 70 1270 194 HOH HOH . G 6 HOH A 71 1271 70 HOH HOH . G 6 HOH A 72 1272 42 HOH HOH . G 6 HOH A 73 1273 96 HOH HOH . G 6 HOH A 74 1274 49 HOH HOH . G 6 HOH A 75 1275 249 HOH HOH . G 6 HOH A 76 1276 174 HOH HOH . G 6 HOH A 77 1277 155 HOH HOH . G 6 HOH A 78 1278 180 HOH HOH . G 6 HOH A 79 1279 98 HOH HOH . G 6 HOH A 80 1280 76 HOH HOH . G 6 HOH A 81 1281 182 HOH HOH . G 6 HOH A 82 1282 148 HOH HOH . G 6 HOH A 83 1283 117 HOH HOH . G 6 HOH A 84 1284 207 HOH HOH . G 6 HOH A 85 1285 9 HOH HOH . G 6 HOH A 86 1286 132 HOH HOH . G 6 HOH A 87 1287 79 HOH HOH . G 6 HOH A 88 1288 21 HOH HOH . G 6 HOH A 89 1289 106 HOH HOH . G 6 HOH A 90 1290 8 HOH HOH . G 6 HOH A 91 1291 50 HOH HOH . G 6 HOH A 92 1292 59 HOH HOH . G 6 HOH A 93 1293 68 HOH HOH . G 6 HOH A 94 1294 26 HOH HOH . G 6 HOH A 95 1295 114 HOH HOH . G 6 HOH A 96 1296 60 HOH HOH . G 6 HOH A 97 1297 168 HOH HOH . G 6 HOH A 98 1298 27 HOH HOH . G 6 HOH A 99 1299 230 HOH HOH . G 6 HOH A 100 1300 193 HOH HOH . G 6 HOH A 101 1301 167 HOH HOH . G 6 HOH A 102 1302 146 HOH HOH . G 6 HOH A 103 1303 57 HOH HOH . G 6 HOH A 104 1304 143 HOH HOH . G 6 HOH A 105 1305 78 HOH HOH . G 6 HOH A 106 1306 135 HOH HOH . G 6 HOH A 107 1307 111 HOH HOH . G 6 HOH A 108 1308 43 HOH HOH . G 6 HOH A 109 1309 99 HOH HOH . G 6 HOH A 110 1310 137 HOH HOH . G 6 HOH A 111 1311 162 HOH HOH . G 6 HOH A 112 1312 141 HOH HOH . G 6 HOH A 113 1313 170 HOH HOH . G 6 HOH A 114 1314 218 HOH HOH . G 6 HOH A 115 1315 6 HOH HOH . G 6 HOH A 116 1316 30 HOH HOH . G 6 HOH A 117 1317 258 HOH HOH . G 6 HOH A 118 1318 152 HOH HOH . G 6 HOH A 119 1319 112 HOH HOH . G 6 HOH A 120 1320 12 HOH HOH . G 6 HOH A 121 1321 202 HOH HOH . G 6 HOH A 122 1322 62 HOH HOH . G 6 HOH A 123 1323 164 HOH HOH . G 6 HOH A 124 1324 156 HOH HOH . G 6 HOH A 125 1325 220 HOH HOH . G 6 HOH A 126 1326 47 HOH HOH . G 6 HOH A 127 1327 22 HOH HOH . G 6 HOH A 128 1328 101 HOH HOH . G 6 HOH A 129 1329 154 HOH HOH . G 6 HOH A 130 1330 226 HOH HOH . G 6 HOH A 131 1331 119 HOH HOH . G 6 HOH A 132 1332 140 HOH HOH . G 6 HOH A 133 1333 97 HOH HOH . G 6 HOH A 134 1334 181 HOH HOH . G 6 HOH A 135 1335 113 HOH HOH . G 6 HOH A 136 1336 144 HOH HOH . G 6 HOH A 137 1337 208 HOH HOH . G 6 HOH A 138 1338 63 HOH HOH . G 6 HOH A 139 1339 40 HOH HOH . G 6 HOH A 140 1340 87 HOH HOH . G 6 HOH A 141 1341 35 HOH HOH . G 6 HOH A 142 1342 7 HOH HOH . G 6 HOH A 143 1343 153 HOH HOH . G 6 HOH A 144 1344 46 HOH HOH . G 6 HOH A 145 1345 147 HOH HOH . G 6 HOH A 146 1346 51 HOH HOH . G 6 HOH A 147 1347 214 HOH HOH . G 6 HOH A 148 1348 110 HOH HOH . G 6 HOH A 149 1349 232 HOH HOH . G 6 HOH A 150 1350 74 HOH HOH . G 6 HOH A 151 1351 77 HOH HOH . G 6 HOH A 152 1352 179 HOH HOH . G 6 HOH A 153 1353 136 HOH HOH . G 6 HOH A 154 1354 259 HOH HOH . G 6 HOH A 155 1355 188 HOH HOH . G 6 HOH A 156 1356 163 HOH HOH . G 6 HOH A 157 1357 37 HOH HOH . G 6 HOH A 158 1358 89 HOH HOH . G 6 HOH A 159 1359 211 HOH HOH . G 6 HOH A 160 1360 183 HOH HOH . G 6 HOH A 161 1361 91 HOH HOH . G 6 HOH A 162 1362 221 HOH HOH . G 6 HOH A 163 1363 165 HOH HOH . G 6 HOH A 164 1364 187 HOH HOH . G 6 HOH A 165 1365 92 HOH HOH . G 6 HOH A 166 1366 172 HOH HOH . G 6 HOH A 167 1367 95 HOH HOH . G 6 HOH A 168 1368 105 HOH HOH . G 6 HOH A 169 1369 176 HOH HOH . G 6 HOH A 170 1370 73 HOH HOH . G 6 HOH A 171 1371 229 HOH HOH . G 6 HOH A 172 1372 186 HOH HOH . G 6 HOH A 173 1373 233 HOH HOH . G 6 HOH A 174 1374 48 HOH HOH . G 6 HOH A 175 1375 231 HOH HOH . G 6 HOH A 176 1376 237 HOH HOH . G 6 HOH A 177 1377 257 HOH HOH . G 6 HOH A 178 1378 246 HOH HOH . G 6 HOH A 179 1379 256 HOH HOH . G 6 HOH A 180 1380 217 HOH HOH . G 6 HOH A 181 1381 124 HOH HOH . G 6 HOH A 182 1382 247 HOH HOH . G 6 HOH A 183 1383 151 HOH HOH . G 6 HOH A 184 1384 225 HOH HOH . G 6 HOH A 185 1385 175 HOH HOH . G 6 HOH A 186 1386 210 HOH HOH . G 6 HOH A 187 1387 56 HOH HOH . G 6 HOH A 188 1388 134 HOH HOH . G 6 HOH A 189 1389 54 HOH HOH . G 6 HOH A 190 1390 127 HOH HOH . G 6 HOH A 191 1391 4 HOH HOH . G 6 HOH A 192 1392 215 HOH HOH . G 6 HOH A 193 1393 251 HOH HOH . G 6 HOH A 194 1394 255 HOH HOH . G 6 HOH A 195 1395 184 HOH HOH . G 6 HOH A 196 1396 19 HOH HOH . G 6 HOH A 197 1397 177 HOH HOH . G 6 HOH A 198 1398 197 HOH HOH . G 6 HOH A 199 1399 250 HOH HOH . G 6 HOH A 200 1400 191 HOH HOH . G 6 HOH A 201 1401 20 HOH HOH . G 6 HOH A 202 1402 116 HOH HOH . G 6 HOH A 203 1403 173 HOH HOH . G 6 HOH A 204 1404 36 HOH HOH . G 6 HOH A 205 1405 198 HOH HOH . G 6 HOH A 206 1406 243 HOH HOH . G 6 HOH A 207 1407 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -9.589 _atom_site.Cartn_y 13.663 _atom_site.Cartn_z -50.979 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #