data_6YKV # _model_server_result.job_id zXMXI4G0qdiktZkNzHBTKg _model_server_result.datetime_utc '2025-01-11 08:54:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ykv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":905}' # _entry.id 6YKV # _exptl.entry_id 6YKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YKV _cell.length_a 49.109 _cell.length_b 80.729 _cell.length_c 224.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 G MG MG . A MG 906 1_555 H O HOH . A HOH 1096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 G MG MG . A MG 906 1_555 H O HOH . A HOH 1119 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 G MG MG . A MG 906 1_555 H O HOH . A HOH 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 G MG MG . A MG 906 1_555 H O HOH . A HOH 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YKV _atom_sites.fract_transf_matrix[1][1] 0.020363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVQ A 1 901 901 OVQ D15 . C 3 ZN A 1 902 1001 ZN ZN . D 4 EDO A 1 903 1101 EDO EDO . E 4 EDO A 1 904 1201 EDO EDO . F 4 EDO A 1 905 1301 EDO EDO . G 5 MG A 1 906 201 MG MG . H 6 HOH A 1 1001 21 HOH HOH . H 6 HOH A 2 1002 81 HOH HOH . H 6 HOH A 3 1003 100 HOH HOH . H 6 HOH A 4 1004 72 HOH HOH . H 6 HOH A 5 1005 90 HOH HOH . H 6 HOH A 6 1006 124 HOH HOH . H 6 HOH A 7 1007 94 HOH HOH . H 6 HOH A 8 1008 34 HOH HOH . H 6 HOH A 9 1009 41 HOH HOH . H 6 HOH A 10 1010 2 HOH HOH . H 6 HOH A 11 1011 26 HOH HOH . H 6 HOH A 12 1012 54 HOH HOH . H 6 HOH A 13 1013 63 HOH HOH . H 6 HOH A 14 1014 66 HOH HOH . H 6 HOH A 15 1015 125 HOH HOH . H 6 HOH A 16 1016 53 HOH HOH . H 6 HOH A 17 1017 110 HOH HOH . H 6 HOH A 18 1018 24 HOH HOH . H 6 HOH A 19 1019 70 HOH HOH . H 6 HOH A 20 1020 62 HOH HOH . H 6 HOH A 21 1021 138 HOH HOH . H 6 HOH A 22 1022 84 HOH HOH . H 6 HOH A 23 1023 47 HOH HOH . H 6 HOH A 24 1024 146 HOH HOH . H 6 HOH A 25 1025 4 HOH HOH . H 6 HOH A 26 1026 23 HOH HOH . H 6 HOH A 27 1027 67 HOH HOH . H 6 HOH A 28 1028 45 HOH HOH . H 6 HOH A 29 1029 40 HOH HOH . H 6 HOH A 30 1030 104 HOH HOH . H 6 HOH A 31 1031 7 HOH HOH . H 6 HOH A 32 1032 28 HOH HOH . H 6 HOH A 33 1033 165 HOH HOH . H 6 HOH A 34 1034 36 HOH HOH . H 6 HOH A 35 1035 8 HOH HOH . H 6 HOH A 36 1036 16 HOH HOH . H 6 HOH A 37 1037 48 HOH HOH . H 6 HOH A 38 1038 44 HOH HOH . H 6 HOH A 39 1039 78 HOH HOH . H 6 HOH A 40 1040 3 HOH HOH . H 6 HOH A 41 1041 27 HOH HOH . H 6 HOH A 42 1042 80 HOH HOH . H 6 HOH A 43 1043 52 HOH HOH . H 6 HOH A 44 1044 19 HOH HOH . H 6 HOH A 45 1045 102 HOH HOH . H 6 HOH A 46 1046 15 HOH HOH . H 6 HOH A 47 1047 12 HOH HOH . H 6 HOH A 48 1048 117 HOH HOH . H 6 HOH A 49 1049 13 HOH HOH . H 6 HOH A 50 1050 92 HOH HOH . H 6 HOH A 51 1051 20 HOH HOH . H 6 HOH A 52 1052 86 HOH HOH . H 6 HOH A 53 1053 129 HOH HOH . H 6 HOH A 54 1054 105 HOH HOH . H 6 HOH A 55 1055 107 HOH HOH . H 6 HOH A 56 1056 5 HOH HOH . H 6 HOH A 57 1057 101 HOH HOH . H 6 HOH A 58 1058 29 HOH HOH . H 6 HOH A 59 1059 25 HOH HOH . H 6 HOH A 60 1060 163 HOH HOH . H 6 HOH A 61 1061 51 HOH HOH . H 6 HOH A 62 1062 68 HOH HOH . H 6 HOH A 63 1063 57 HOH HOH . H 6 HOH A 64 1064 123 HOH HOH . H 6 HOH A 65 1065 9 HOH HOH . H 6 HOH A 66 1066 82 HOH HOH . H 6 HOH A 67 1067 46 HOH HOH . H 6 HOH A 68 1068 10 HOH HOH . H 6 HOH A 69 1069 64 HOH HOH . H 6 HOH A 70 1070 31 HOH HOH . H 6 HOH A 71 1071 88 HOH HOH . H 6 HOH A 72 1072 83 HOH HOH . H 6 HOH A 73 1073 38 HOH HOH . H 6 HOH A 74 1074 14 HOH HOH . H 6 HOH A 75 1075 150 HOH HOH . H 6 HOH A 76 1076 122 HOH HOH . H 6 HOH A 77 1077 6 HOH HOH . H 6 HOH A 78 1078 91 HOH HOH . H 6 HOH A 79 1079 111 HOH HOH . H 6 HOH A 80 1080 112 HOH HOH . H 6 HOH A 81 1081 76 HOH HOH . H 6 HOH A 82 1082 142 HOH HOH . H 6 HOH A 83 1083 50 HOH HOH . H 6 HOH A 84 1084 109 HOH HOH . H 6 HOH A 85 1085 42 HOH HOH . H 6 HOH A 86 1086 158 HOH HOH . H 6 HOH A 87 1087 11 HOH HOH . H 6 HOH A 88 1088 65 HOH HOH . H 6 HOH A 89 1089 115 HOH HOH . H 6 HOH A 90 1090 39 HOH HOH . H 6 HOH A 91 1091 1 HOH HOH . H 6 HOH A 92 1092 33 HOH HOH . H 6 HOH A 93 1093 71 HOH HOH . H 6 HOH A 94 1094 37 HOH HOH . H 6 HOH A 95 1095 140 HOH HOH . H 6 HOH A 96 1096 58 HOH HOH . H 6 HOH A 97 1097 30 HOH HOH . H 6 HOH A 98 1098 60 HOH HOH . H 6 HOH A 99 1099 77 HOH HOH . H 6 HOH A 100 1100 148 HOH HOH . H 6 HOH A 101 1101 96 HOH HOH . H 6 HOH A 102 1102 18 HOH HOH . H 6 HOH A 103 1103 114 HOH HOH . H 6 HOH A 104 1104 164 HOH HOH . H 6 HOH A 105 1105 49 HOH HOH . H 6 HOH A 106 1106 99 HOH HOH . H 6 HOH A 107 1107 157 HOH HOH . H 6 HOH A 108 1108 85 HOH HOH . H 6 HOH A 109 1109 59 HOH HOH . H 6 HOH A 110 1110 32 HOH HOH . H 6 HOH A 111 1111 106 HOH HOH . H 6 HOH A 112 1112 154 HOH HOH . H 6 HOH A 113 1113 35 HOH HOH . H 6 HOH A 114 1114 103 HOH HOH . H 6 HOH A 115 1115 98 HOH HOH . H 6 HOH A 116 1116 121 HOH HOH . H 6 HOH A 117 1117 119 HOH HOH . H 6 HOH A 118 1118 152 HOH HOH . H 6 HOH A 119 1119 113 HOH HOH . H 6 HOH A 120 1120 95 HOH HOH . H 6 HOH A 121 1121 17 HOH HOH . H 6 HOH A 122 1122 73 HOH HOH . H 6 HOH A 123 1123 74 HOH HOH . H 6 HOH A 124 1124 155 HOH HOH . H 6 HOH A 125 1125 136 HOH HOH . H 6 HOH A 126 1126 120 HOH HOH . H 6 HOH A 127 1127 149 HOH HOH . H 6 HOH A 128 1128 153 HOH HOH . H 6 HOH A 129 1129 160 HOH HOH . H 6 HOH A 130 1130 22 HOH HOH . H 6 HOH A 131 1131 156 HOH HOH . H 6 HOH A 132 1132 56 HOH HOH . H 6 HOH A 133 1133 141 HOH HOH . H 6 HOH A 134 1134 126 HOH HOH . H 6 HOH A 135 1135 116 HOH HOH . H 6 HOH A 136 1136 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 3.91 25.123 -25.019 1 70.4 ? C1 EDO 905 A 1 HETATM 2 O O1 EDO . . . F 4 2.781 25.889 -24.581 1 80.62 ? O1 EDO 905 A 1 HETATM 3 C C2 EDO . . . F 4 4.573 24.463 -23.817 1 61.83 ? C2 EDO 905 A 1 HETATM 4 O O2 EDO . . . F 4 3.622 23.624 -23.152 1 68.04 ? O2 EDO 905 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #