data_6YKW # _model_server_result.job_id LhMkijk2zyb0bktbOAjQTQ _model_server_result.datetime_utc '2025-01-12 09:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ykw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1105}' # _entry.id 6YKW # _exptl.entry_id 6YKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YKW _cell.length_a 49.429 _cell.length_b 81.338 _cell.length_c 225.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 F ZN ZN . A ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 F ZN ZN . A ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 F ZN ZN . A ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 F ZN ZN . A ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 E MG MG . A MG 1104 1_555 G O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 E MG MG . A MG 1104 1_555 G O HOH . A HOH 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 E MG MG . A MG 1104 1_555 G O HOH . A HOH 1294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YKW _atom_sites.fract_transf_matrix[1][1] 0.020231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1101 1101 EDO EDO . C 2 EDO A 1 1102 1201 EDO EDO . D 3 OVZ A 1 1103 1301 OVZ D16 . E 4 MG A 1 1104 1 MG MG . F 5 ZN A 1 1105 1 ZN ZN . G 6 HOH A 1 1201 24 HOH HOH . G 6 HOH A 2 1202 62 HOH HOH . G 6 HOH A 3 1203 64 HOH HOH . G 6 HOH A 4 1204 45 HOH HOH . G 6 HOH A 5 1205 63 HOH HOH . G 6 HOH A 6 1206 74 HOH HOH . G 6 HOH A 7 1207 83 HOH HOH . G 6 HOH A 8 1208 89 HOH HOH . G 6 HOH A 9 1209 23 HOH HOH . G 6 HOH A 10 1210 21 HOH HOH . G 6 HOH A 11 1211 27 HOH HOH . G 6 HOH A 12 1212 59 HOH HOH . G 6 HOH A 13 1213 72 HOH HOH . G 6 HOH A 14 1214 43 HOH HOH . G 6 HOH A 15 1215 52 HOH HOH . G 6 HOH A 16 1216 46 HOH HOH . G 6 HOH A 17 1217 73 HOH HOH . G 6 HOH A 18 1218 96 HOH HOH . G 6 HOH A 19 1219 54 HOH HOH . G 6 HOH A 20 1220 55 HOH HOH . G 6 HOH A 21 1221 67 HOH HOH . G 6 HOH A 22 1222 20 HOH HOH . G 6 HOH A 23 1223 99 HOH HOH . G 6 HOH A 24 1224 88 HOH HOH . G 6 HOH A 25 1225 5 HOH HOH . G 6 HOH A 26 1226 109 HOH HOH . G 6 HOH A 27 1227 39 HOH HOH . G 6 HOH A 28 1228 91 HOH HOH . G 6 HOH A 29 1229 35 HOH HOH . G 6 HOH A 30 1230 7 HOH HOH . G 6 HOH A 31 1231 2 HOH HOH . G 6 HOH A 32 1232 22 HOH HOH . G 6 HOH A 33 1233 3 HOH HOH . G 6 HOH A 34 1234 37 HOH HOH . G 6 HOH A 35 1235 66 HOH HOH . G 6 HOH A 36 1236 36 HOH HOH . G 6 HOH A 37 1237 65 HOH HOH . G 6 HOH A 38 1238 80 HOH HOH . G 6 HOH A 39 1239 42 HOH HOH . G 6 HOH A 40 1240 69 HOH HOH . G 6 HOH A 41 1241 15 HOH HOH . G 6 HOH A 42 1242 18 HOH HOH . G 6 HOH A 43 1243 34 HOH HOH . G 6 HOH A 44 1244 25 HOH HOH . G 6 HOH A 45 1245 9 HOH HOH . G 6 HOH A 46 1246 40 HOH HOH . G 6 HOH A 47 1247 53 HOH HOH . G 6 HOH A 48 1248 6 HOH HOH . G 6 HOH A 49 1249 26 HOH HOH . G 6 HOH A 50 1250 11 HOH HOH . G 6 HOH A 51 1251 84 HOH HOH . G 6 HOH A 52 1252 48 HOH HOH . G 6 HOH A 53 1253 98 HOH HOH . G 6 HOH A 54 1254 14 HOH HOH . G 6 HOH A 55 1255 1 HOH HOH . G 6 HOH A 56 1256 4 HOH HOH . G 6 HOH A 57 1257 78 HOH HOH . G 6 HOH A 58 1258 33 HOH HOH . G 6 HOH A 59 1259 106 HOH HOH . G 6 HOH A 60 1260 111 HOH HOH . G 6 HOH A 61 1261 85 HOH HOH . G 6 HOH A 62 1262 90 HOH HOH . G 6 HOH A 63 1263 86 HOH HOH . G 6 HOH A 64 1264 28 HOH HOH . G 6 HOH A 65 1265 10 HOH HOH . G 6 HOH A 66 1266 31 HOH HOH . G 6 HOH A 67 1267 13 HOH HOH . G 6 HOH A 68 1268 82 HOH HOH . G 6 HOH A 69 1269 120 HOH HOH . G 6 HOH A 70 1270 41 HOH HOH . G 6 HOH A 71 1271 110 HOH HOH . G 6 HOH A 72 1272 56 HOH HOH . G 6 HOH A 73 1273 17 HOH HOH . G 6 HOH A 74 1274 77 HOH HOH . G 6 HOH A 75 1275 12 HOH HOH . G 6 HOH A 76 1276 105 HOH HOH . G 6 HOH A 77 1277 51 HOH HOH . G 6 HOH A 78 1278 94 HOH HOH . G 6 HOH A 79 1279 29 HOH HOH . G 6 HOH A 80 1280 117 HOH HOH . G 6 HOH A 81 1281 104 HOH HOH . G 6 HOH A 82 1282 115 HOH HOH . G 6 HOH A 83 1283 114 HOH HOH . G 6 HOH A 84 1284 19 HOH HOH . G 6 HOH A 85 1285 102 HOH HOH . G 6 HOH A 86 1286 118 HOH HOH . G 6 HOH A 87 1287 97 HOH HOH . G 6 HOH A 88 1288 116 HOH HOH . G 6 HOH A 89 1289 100 HOH HOH . G 6 HOH A 90 1290 101 HOH HOH . G 6 HOH A 91 1291 50 HOH HOH . G 6 HOH A 92 1292 121 HOH HOH . G 6 HOH A 93 1293 108 HOH HOH . G 6 HOH A 94 1294 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 32.823 _atom_site.Cartn_y 16.305 _atom_site.Cartn_z -23.665 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #