data_6YLZ
#
_model_server_result.job_id            '_nkepBGjaJvK2JGg121UAA' 
_model_server_result.datetime_utc      '2024-12-23 04:32:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ylz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6YLZ 
#
_exptl.entry_id    6YLZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YLZ 
_cell.length_a            63.776 
_cell.length_b            63.776 
_cell.length_c            124.727 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YLZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     6YLZ 
_atom_sites.fract_transf_matrix[1][1]    0.01568 
_atom_sites.fract_transf_matrix[1][2]    0.009053 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN AAA 1 301 301 FMN FMN . 
C 3 SO4 AAA 1 302 2 SO4 SO4 . 
D 3 SO4 AAA 1 303 3 SO4 SO4 . 
E 4 PO4 AAA 1 304 1 PO4 PO4 . 
F 5 HOH AAA 1 401 742 HOH HOH . 
F 5 HOH AAA 2 402 639 HOH HOH . 
F 5 HOH AAA 3 403 215 HOH HOH . 
F 5 HOH AAA 4 404 645 HOH HOH . 
F 5 HOH AAA 5 405 27 HOH HOH . 
F 5 HOH AAA 6 406 700 HOH HOH . 
F 5 HOH AAA 7 407 195 HOH HOH . 
F 5 HOH AAA 8 408 82 HOH HOH . 
F 5 HOH AAA 9 409 102 HOH HOH . 
F 5 HOH AAA 10 410 155 HOH HOH . 
F 5 HOH AAA 11 411 354 HOH HOH . 
F 5 HOH AAA 12 412 713 HOH HOH . 
F 5 HOH AAA 13 413 118 HOH HOH . 
F 5 HOH AAA 14 414 31 HOH HOH . 
F 5 HOH AAA 15 415 4 HOH HOH . 
F 5 HOH AAA 16 416 24 HOH HOH . 
F 5 HOH AAA 17 417 47 HOH HOH . 
F 5 HOH AAA 18 418 11 HOH HOH . 
F 5 HOH AAA 19 419 42 HOH HOH . 
F 5 HOH AAA 20 420 134 HOH HOH . 
F 5 HOH AAA 21 421 117 HOH HOH . 
F 5 HOH AAA 22 422 48 HOH HOH . 
F 5 HOH AAA 23 423 689 HOH HOH . 
F 5 HOH AAA 24 424 62 HOH HOH . 
F 5 HOH AAA 25 425 162 HOH HOH . 
F 5 HOH AAA 26 426 213 HOH HOH . 
F 5 HOH AAA 27 427 672 HOH HOH . 
F 5 HOH AAA 28 428 121 HOH HOH . 
F 5 HOH AAA 29 429 53 HOH HOH . 
F 5 HOH AAA 30 430 9 HOH HOH . 
F 5 HOH AAA 31 431 61 HOH HOH . 
F 5 HOH AAA 32 432 392 HOH HOH . 
F 5 HOH AAA 33 433 54 HOH HOH . 
F 5 HOH AAA 34 434 123 HOH HOH . 
F 5 HOH AAA 35 435 20 HOH HOH . 
F 5 HOH AAA 36 436 111 HOH HOH . 
F 5 HOH AAA 37 437 36 HOH HOH . 
F 5 HOH AAA 38 438 13 HOH HOH . 
F 5 HOH AAA 39 439 35 HOH HOH . 
F 5 HOH AAA 40 440 741 HOH HOH . 
F 5 HOH AAA 41 441 37 HOH HOH . 
F 5 HOH AAA 42 442 196 HOH HOH . 
F 5 HOH AAA 43 443 177 HOH HOH . 
F 5 HOH AAA 44 444 66 HOH HOH . 
F 5 HOH AAA 45 445 114 HOH HOH . 
F 5 HOH AAA 46 446 6 HOH HOH . 
F 5 HOH AAA 47 447 106 HOH HOH . 
F 5 HOH AAA 48 448 14 HOH HOH . 
F 5 HOH AAA 49 449 21 HOH HOH . 
F 5 HOH AAA 50 450 18 HOH HOH . 
F 5 HOH AAA 51 451 69 HOH HOH . 
F 5 HOH AAA 52 452 120 HOH HOH . 
F 5 HOH AAA 53 453 43 HOH HOH . 
F 5 HOH AAA 54 454 2 HOH HOH . 
F 5 HOH AAA 55 455 112 HOH HOH . 
F 5 HOH AAA 56 456 116 HOH HOH . 
F 5 HOH AAA 57 457 226 HOH HOH . 
F 5 HOH AAA 58 458 10 HOH HOH . 
F 5 HOH AAA 59 459 19 HOH HOH . 
F 5 HOH AAA 60 460 39 HOH HOH . 
F 5 HOH AAA 61 461 119 HOH HOH . 
F 5 HOH AAA 62 462 15 HOH HOH . 
F 5 HOH AAA 63 463 674 HOH HOH . 
F 5 HOH AAA 64 464 675 HOH HOH . 
F 5 HOH AAA 65 465 17 HOH HOH . 
F 5 HOH AAA 66 466 223 HOH HOH . 
F 5 HOH AAA 67 467 638 HOH HOH . 
F 5 HOH AAA 68 468 63 HOH HOH . 
F 5 HOH AAA 69 469 52 HOH HOH . 
F 5 HOH AAA 70 470 140 HOH HOH . 
F 5 HOH AAA 71 471 322 HOH HOH . 
F 5 HOH AAA 72 472 1 HOH HOH . 
F 5 HOH AAA 73 473 22 HOH HOH . 
F 5 HOH AAA 74 474 105 HOH HOH . 
F 5 HOH AAA 75 475 16 HOH HOH . 
F 5 HOH AAA 76 476 91 HOH HOH . 
F 5 HOH AAA 77 477 572 HOH HOH . 
F 5 HOH AAA 78 478 619 HOH HOH . 
F 5 HOH AAA 79 479 164 HOH HOH . 
F 5 HOH AAA 80 480 79 HOH HOH . 
F 5 HOH AAA 81 481 93 HOH HOH . 
F 5 HOH AAA 82 482 680 HOH HOH . 
F 5 HOH AAA 83 483 30 HOH HOH . 
F 5 HOH AAA 84 484 12 HOH HOH . 
F 5 HOH AAA 85 485 72 HOH HOH . 
F 5 HOH AAA 86 486 131 HOH HOH . 
F 5 HOH AAA 87 487 46 HOH HOH . 
F 5 HOH AAA 88 488 682 HOH HOH . 
F 5 HOH AAA 89 489 137 HOH HOH . 
F 5 HOH AAA 90 490 68 HOH HOH . 
F 5 HOH AAA 91 491 3 HOH HOH . 
F 5 HOH AAA 92 492 89 HOH HOH . 
F 5 HOH AAA 93 493 70 HOH HOH . 
F 5 HOH AAA 94 494 122 HOH HOH . 
F 5 HOH AAA 95 495 124 HOH HOH . 
F 5 HOH AAA 96 496 8 HOH HOH . 
F 5 HOH AAA 97 497 644 HOH HOH . 
F 5 HOH AAA 98 498 163 HOH HOH . 
F 5 HOH AAA 99 499 139 HOH HOH . 
F 5 HOH AAA 100 500 58 HOH HOH . 
F 5 HOH AAA 101 501 55 HOH HOH . 
F 5 HOH AAA 102 502 687 HOH HOH . 
F 5 HOH AAA 103 503 23 HOH HOH . 
F 5 HOH AAA 104 504 5 HOH HOH . 
F 5 HOH AAA 105 505 76 HOH HOH . 
F 5 HOH AAA 106 506 643 HOH HOH . 
F 5 HOH AAA 107 507 60 HOH HOH . 
F 5 HOH AAA 108 508 161 HOH HOH . 
F 5 HOH AAA 109 509 25 HOH HOH . 
F 5 HOH AAA 110 510 681 HOH HOH . 
F 5 HOH AAA 111 511 41 HOH HOH . 
F 5 HOH AAA 112 512 33 HOH HOH . 
F 5 HOH AAA 113 513 40 HOH HOH . 
F 5 HOH AAA 114 514 38 HOH HOH . 
F 5 HOH AAA 115 515 29 HOH HOH . 
F 5 HOH AAA 116 516 205 HOH HOH . 
F 5 HOH AAA 117 517 629 HOH HOH . 
F 5 HOH AAA 118 518 115 HOH HOH . 
F 5 HOH AAA 119 519 75 HOH HOH . 
F 5 HOH AAA 120 520 729 HOH HOH . 
F 5 HOH AAA 121 521 597 HOH HOH . 
F 5 HOH AAA 122 522 281 HOH HOH . 
F 5 HOH AAA 123 523 694 HOH HOH . 
F 5 HOH AAA 124 524 726 HOH HOH . 
F 5 HOH AAA 125 525 709 HOH HOH . 
F 5 HOH AAA 126 526 690 HOH HOH . 
F 5 HOH AAA 127 527 28 HOH HOH . 
F 5 HOH AAA 128 528 622 HOH HOH . 
F 5 HOH AAA 129 529 718 HOH HOH . 
F 5 HOH AAA 130 530 676 HOH HOH . 
F 5 HOH AAA 131 531 45 HOH HOH . 
F 5 HOH AAA 132 532 200 HOH HOH . 
F 5 HOH AAA 133 533 210 HOH HOH . 
F 5 HOH AAA 134 534 184 HOH HOH . 
F 5 HOH AAA 135 535 113 HOH HOH . 
F 5 HOH AAA 136 536 74 HOH HOH . 
F 5 HOH AAA 137 537 627 HOH HOH . 
F 5 HOH AAA 138 538 101 HOH HOH . 
F 5 HOH AAA 139 539 186 HOH HOH . 
F 5 HOH AAA 140 540 618 HOH HOH . 
F 5 HOH AAA 141 541 245 HOH HOH . 
F 5 HOH AAA 142 542 190 HOH HOH . 
F 5 HOH AAA 143 543 59 HOH HOH . 
F 5 HOH AAA 144 544 311 HOH HOH . 
F 5 HOH AAA 145 545 653 HOH HOH . 
F 5 HOH AAA 146 546 67 HOH HOH . 
F 5 HOH AAA 147 547 716 HOH HOH . 
F 5 HOH AAA 148 548 529 HOH HOH . 
F 5 HOH AAA 149 549 302 HOH HOH . 
F 5 HOH AAA 150 550 630 HOH HOH . 
F 5 HOH AAA 151 551 198 HOH HOH . 
F 5 HOH AAA 152 552 234 HOH HOH . 
F 5 HOH AAA 153 553 555 HOH HOH . 
F 5 HOH AAA 154 554 647 HOH HOH . 
F 5 HOH AAA 155 555 97 HOH HOH . 
F 5 HOH AAA 156 556 238 HOH HOH . 
F 5 HOH AAA 157 557 80 HOH HOH . 
F 5 HOH AAA 158 558 216 HOH HOH . 
F 5 HOH AAA 159 559 706 HOH HOH . 
F 5 HOH AAA 160 560 103 HOH HOH . 
F 5 HOH AAA 161 561 731 HOH HOH . 
F 5 HOH AAA 162 562 183 HOH HOH . 
F 5 HOH AAA 163 563 197 HOH HOH . 
F 5 HOH AAA 164 564 185 HOH HOH . 
F 5 HOH AAA 165 565 187 HOH HOH . 
F 5 HOH AAA 166 566 99 HOH HOH . 
F 5 HOH AAA 167 567 367 HOH HOH . 
F 5 HOH AAA 168 568 312 HOH HOH . 
F 5 HOH AAA 169 569 217 HOH HOH . 
F 5 HOH AAA 170 570 693 HOH HOH . 
F 5 HOH AAA 171 571 230 HOH HOH . 
F 5 HOH AAA 172 572 214 HOH HOH . 
F 5 HOH AAA 173 573 655 HOH HOH . 
F 5 HOH AAA 174 574 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 -12.932 -19.262 -13.316 1 23.36 ? N1 FMN 301 AAA 1 
HETATM 2 C C2 FMN . . . B 2 -14.209 -19.196 -13.79 1 27.23 ? C2 FMN 301 AAA 1 
HETATM 3 O O2 FMN . . . B 2 -14.691 -20.151 -14.454 1 27.12 ? O2 FMN 301 AAA 1 
HETATM 4 N N3 FMN . . . B 2 -14.957 -18.112 -13.526 1 24.23 ? N3 FMN 301 AAA 1 
HETATM 5 C C4 FMN . . . B 2 -14.521 -16.982 -12.917 1 23.44 ? C4 FMN 301 AAA 1 
HETATM 6 O O4 FMN . . . B 2 -15.25 -15.959 -12.643 1 25.2 ? O4 FMN 301 AAA 1 
HETATM 7 C C4A FMN . . . B 2 -13.159 -16.961 -12.42 1 24.69 ? C4A FMN 301 AAA 1 
HETATM 8 N N5 FMN . . . B 2 -12.633 -15.848 -11.833 1 26.09 ? N5 FMN 301 AAA 1 
HETATM 9 C C5A FMN . . . B 2 -11.398 -15.911 -11.288 1 24.85 ? C5A FMN 301 AAA 1 
HETATM 10 C C6 FMN . . . B 2 -10.943 -14.861 -10.558 1 24.28 ? C6 FMN 301 AAA 1 
HETATM 11 C C7 FMN . . . B 2 -9.7 -14.885 -9.991 1 26.7 ? C7 FMN 301 AAA 1 
HETATM 12 C C7M FMN . . . B 2 -9.222 -13.712 -9.188 1 26.87 ? C7M FMN 301 AAA 1 
HETATM 13 C C8 FMN . . . B 2 -8.887 -16.072 -10.085 1 24.75 ? C8 FMN 301 AAA 1 
HETATM 14 C C8M FMN . . . B 2 -7.492 -16.12 -9.463 1 26.66 ? C8M FMN 301 AAA 1 
HETATM 15 C C9 FMN . . . B 2 -9.34 -17.185 -10.798 1 24.05 ? C9 FMN 301 AAA 1 
HETATM 16 C C9A FMN . . . B 2 -10.597 -17.148 -11.418 1 25.04 ? C9A FMN 301 AAA 1 
HETATM 17 N N10 FMN . . . B 2 -11.111 -18.26 -12.178 1 24.58 ? N10 FMN 301 AAA 1 
HETATM 18 C C10 FMN . . . B 2 -12.397 -18.2 -12.652 1 24.41 ? C10 FMN 301 AAA 1 
HETATM 19 C C1' FMN . . . B 2 -10.382 -19.523 -12.393 1 23.5 ? C1' FMN 301 AAA 1 
HETATM 20 C C2' FMN . . . B 2 -10.792 -20.549 -11.367 1 23.11 ? C2' FMN 301 AAA 1 
HETATM 21 O O2' FMN . . . B 2 -10.186 -20.274 -10.084 1 23.13 ? O2' FMN 301 AAA 1 
HETATM 22 C C3' FMN . . . B 2 -10.452 -21.975 -11.755 1 23.58 ? C3' FMN 301 AAA 1 
HETATM 23 O O3' FMN . . . B 2 -9.056 -22.046 -12.11 1 23.69 ? O3' FMN 301 AAA 1 
HETATM 24 C C4' FMN . . . B 2 -11.267 -22.452 -12.951 1 24.42 ? C4' FMN 301 AAA 1 
HETATM 25 O O4' FMN . . . B 2 -12.626 -21.969 -12.956 1 24.84 ? O4' FMN 301 AAA 1 
HETATM 26 C C5' FMN . . . B 2 -11.261 -23.948 -12.985 1 24.43 ? C5' FMN 301 AAA 1 
HETATM 27 O O5' FMN . . . B 2 -11.913 -24.465 -11.859 1 23.82 ? O5' FMN 301 AAA 1 
HETATM 28 P P FMN . . . B 2 -12.354 -26.014 -11.887 1 24.18 ? P FMN 301 AAA 1 
HETATM 29 O O1P FMN . . . B 2 -13.76 -26.081 -12.521 1 25.72 ? O1P FMN 301 AAA 1 
HETATM 30 O O2P FMN . . . B 2 -11.204 -26.766 -12.625 1 26.25 ? O2P FMN 301 AAA 1 
HETATM 31 O O3P FMN . . . B 2 -12.337 -26.35 -10.476 1 23.88 ? O3P FMN 301 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#