data_6YM3
#
_model_server_result.job_id            Te0zaiWa4YN7ZmncgDJGVA 
_model_server_result.datetime_utc      '2024-10-19 13:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ym3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    6YM3 
#
_exptl.entry_id    6YM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.96 
_cell.angle_gamma         90 
_cell.entry_id            6YM3 
_cell.length_a            43.934 
_cell.length_b            98.132 
_cell.length_c            104.256 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 347 A ILE 358 1_555 A N PHD 348 A PHD 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 A C PHD 348 A PHD 359 1_555 A N ILE 349 A ILE 360 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C PHD 348 A PHD 359 1_555 A N ILE 349 A ILE 360 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 B C ILE 347 B ILE 358 1_555 B N PHD 348 B PHD 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 B C PHD 348 B PHD 359 1_555 B N ILE 349 B ILE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 340 n n 
P O2 PO4 sing 341 n n 
P O3 PO4 sing 342 n n 
P O4 PO4 sing 343 n n 
#
_atom_sites.entry_id                     6YM3 
_atom_sites.fract_transf_matrix[1][1]    0.022761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001177 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OYZ A 1 501 2 OYZ LIG . 
D 3 PO4 A 1 502 2 PO4 PO4 . 
E 2 OYZ B 1 501 1 OYZ LIG . 
F 3 PO4 B 1 502 4 PO4 PO4 . 
G 4 HOH A 1 601 113 HOH HOH . 
G 4 HOH A 2 602 63 HOH HOH . 
G 4 HOH A 3 603 73 HOH HOH . 
G 4 HOH A 4 604 98 HOH HOH . 
G 4 HOH A 5 605 160 HOH HOH . 
G 4 HOH A 6 606 58 HOH HOH . 
G 4 HOH A 7 607 118 HOH HOH . 
G 4 HOH A 8 608 24 HOH HOH . 
G 4 HOH A 9 609 124 HOH HOH . 
G 4 HOH A 10 610 45 HOH HOH . 
G 4 HOH A 11 611 13 HOH HOH . 
G 4 HOH A 12 612 102 HOH HOH . 
G 4 HOH A 13 613 128 HOH HOH . 
G 4 HOH A 14 614 7 HOH HOH . 
G 4 HOH A 15 615 115 HOH HOH . 
G 4 HOH A 16 616 56 HOH HOH . 
G 4 HOH A 17 617 57 HOH HOH . 
G 4 HOH A 18 618 52 HOH HOH . 
G 4 HOH A 19 619 132 HOH HOH . 
G 4 HOH A 20 620 14 HOH HOH . 
G 4 HOH A 21 621 53 HOH HOH . 
G 4 HOH A 22 622 34 HOH HOH . 
G 4 HOH A 23 623 123 HOH HOH . 
G 4 HOH A 24 624 46 HOH HOH . 
G 4 HOH A 25 625 9 HOH HOH . 
G 4 HOH A 26 626 77 HOH HOH . 
G 4 HOH A 27 627 55 HOH HOH . 
G 4 HOH A 28 628 5 HOH HOH . 
G 4 HOH A 29 629 36 HOH HOH . 
G 4 HOH A 30 630 67 HOH HOH . 
G 4 HOH A 31 631 138 HOH HOH . 
G 4 HOH A 32 632 64 HOH HOH . 
G 4 HOH A 33 633 79 HOH HOH . 
G 4 HOH A 34 634 120 HOH HOH . 
G 4 HOH A 35 635 116 HOH HOH . 
G 4 HOH A 36 636 23 HOH HOH . 
G 4 HOH A 37 637 42 HOH HOH . 
G 4 HOH A 38 638 135 HOH HOH . 
G 4 HOH A 39 639 134 HOH HOH . 
G 4 HOH A 40 640 130 HOH HOH . 
G 4 HOH A 41 641 26 HOH HOH . 
G 4 HOH A 42 642 89 HOH HOH . 
G 4 HOH A 43 643 15 HOH HOH . 
G 4 HOH A 44 644 12 HOH HOH . 
G 4 HOH A 45 645 38 HOH HOH . 
G 4 HOH A 46 646 149 HOH HOH . 
G 4 HOH A 47 647 1 HOH HOH . 
G 4 HOH A 48 648 21 HOH HOH . 
G 4 HOH A 49 649 81 HOH HOH . 
G 4 HOH A 50 650 27 HOH HOH . 
G 4 HOH A 51 651 83 HOH HOH . 
G 4 HOH A 52 652 39 HOH HOH . 
G 4 HOH A 53 653 82 HOH HOH . 
G 4 HOH A 54 654 139 HOH HOH . 
G 4 HOH A 55 655 18 HOH HOH . 
G 4 HOH A 56 656 47 HOH HOH . 
G 4 HOH A 57 657 75 HOH HOH . 
G 4 HOH A 58 658 8 HOH HOH . 
G 4 HOH A 59 659 148 HOH HOH . 
G 4 HOH A 60 660 121 HOH HOH . 
G 4 HOH A 61 661 28 HOH HOH . 
G 4 HOH A 62 662 72 HOH HOH . 
G 4 HOH A 63 663 162 HOH HOH . 
G 4 HOH A 64 664 43 HOH HOH . 
G 4 HOH A 65 665 117 HOH HOH . 
G 4 HOH A 66 666 126 HOH HOH . 
G 4 HOH A 67 667 161 HOH HOH . 
G 4 HOH A 68 668 150 HOH HOH . 
G 4 HOH A 69 669 6 HOH HOH . 
G 4 HOH A 70 670 80 HOH HOH . 
G 4 HOH A 71 671 62 HOH HOH . 
G 4 HOH A 72 672 78 HOH HOH . 
G 4 HOH A 73 673 129 HOH HOH . 
G 4 HOH A 74 674 145 HOH HOH . 
G 4 HOH A 75 675 143 HOH HOH . 
G 4 HOH A 76 676 142 HOH HOH . 
G 4 HOH A 77 677 147 HOH HOH . 
G 4 HOH A 78 678 122 HOH HOH . 
G 4 HOH A 79 679 144 HOH HOH . 
G 4 HOH A 80 680 133 HOH HOH . 
G 4 HOH A 81 681 146 HOH HOH . 
H 4 HOH B 1 601 112 HOH HOH . 
H 4 HOH B 2 602 54 HOH HOH . 
H 4 HOH B 3 603 16 HOH HOH . 
H 4 HOH B 4 604 60 HOH HOH . 
H 4 HOH B 5 605 90 HOH HOH . 
H 4 HOH B 6 606 74 HOH HOH . 
H 4 HOH B 7 607 29 HOH HOH . 
H 4 HOH B 8 608 71 HOH HOH . 
H 4 HOH B 9 609 125 HOH HOH . 
H 4 HOH B 10 610 157 HOH HOH . 
H 4 HOH B 11 611 32 HOH HOH . 
H 4 HOH B 12 612 159 HOH HOH . 
H 4 HOH B 13 613 4 HOH HOH . 
H 4 HOH B 14 614 119 HOH HOH . 
H 4 HOH B 15 615 109 HOH HOH . 
H 4 HOH B 16 616 61 HOH HOH . 
H 4 HOH B 17 617 86 HOH HOH . 
H 4 HOH B 18 618 68 HOH HOH . 
H 4 HOH B 19 619 22 HOH HOH . 
H 4 HOH B 20 620 3 HOH HOH . 
H 4 HOH B 21 621 20 HOH HOH . 
H 4 HOH B 22 622 33 HOH HOH . 
H 4 HOH B 23 623 91 HOH HOH . 
H 4 HOH B 24 624 155 HOH HOH . 
H 4 HOH B 25 625 97 HOH HOH . 
H 4 HOH B 26 626 10 HOH HOH . 
H 4 HOH B 27 627 156 HOH HOH . 
H 4 HOH B 28 628 11 HOH HOH . 
H 4 HOH B 29 629 41 HOH HOH . 
H 4 HOH B 30 630 106 HOH HOH . 
H 4 HOH B 31 631 65 HOH HOH . 
H 4 HOH B 32 632 88 HOH HOH . 
H 4 HOH B 33 633 2 HOH HOH . 
H 4 HOH B 34 634 25 HOH HOH . 
H 4 HOH B 35 635 31 HOH HOH . 
H 4 HOH B 36 636 51 HOH HOH . 
H 4 HOH B 37 637 84 HOH HOH . 
H 4 HOH B 38 638 93 HOH HOH . 
H 4 HOH B 39 639 59 HOH HOH . 
H 4 HOH B 40 640 94 HOH HOH . 
H 4 HOH B 41 641 40 HOH HOH . 
H 4 HOH B 42 642 19 HOH HOH . 
H 4 HOH B 43 643 85 HOH HOH . 
H 4 HOH B 44 644 30 HOH HOH . 
H 4 HOH B 45 645 111 HOH HOH . 
H 4 HOH B 46 646 48 HOH HOH . 
H 4 HOH B 47 647 76 HOH HOH . 
H 4 HOH B 48 648 87 HOH HOH . 
H 4 HOH B 49 649 37 HOH HOH . 
H 4 HOH B 50 650 158 HOH HOH . 
H 4 HOH B 51 651 103 HOH HOH . 
H 4 HOH B 52 652 95 HOH HOH . 
H 4 HOH B 53 653 92 HOH HOH . 
H 4 HOH B 54 654 136 HOH HOH . 
H 4 HOH B 55 655 152 HOH HOH . 
H 4 HOH B 56 656 17 HOH HOH . 
H 4 HOH B 57 657 96 HOH HOH . 
H 4 HOH B 58 658 49 HOH HOH . 
H 4 HOH B 59 659 35 HOH HOH . 
H 4 HOH B 60 660 154 HOH HOH . 
H 4 HOH B 61 661 69 HOH HOH . 
H 4 HOH B 62 662 107 HOH HOH . 
H 4 HOH B 63 663 153 HOH HOH . 
H 4 HOH B 64 664 151 HOH HOH . 
H 4 HOH B 65 665 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 3 10.694 -6.374 -14.196 1 84.54 ? P PO4 502 A 1 
HETATM 2 O O1 PO4 . . . D 3 11.224 -6.962 -15.502 1 74.47 ? O1 PO4 502 A 1 
HETATM 3 O O2 PO4 . . . D 3 9.732 -5.208 -14.512 1 59.8 ? O2 PO4 502 A 1 
HETATM 4 O O3 PO4 . . . D 3 11.875 -5.839 -13.372 1 77.59 ? O3 PO4 502 A 1 
HETATM 5 O O4 PO4 . . . D 3 9.969 -7.485 -13.404 1 64.63 ? O4 PO4 502 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#