data_6YMA # _model_server_result.job_id HI67HaEsbkyWLtzETgu9tA _model_server_result.datetime_utc '2024-12-02 19:01:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6YMA # _exptl.entry_id 6YMA _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 222.245 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.62 _cell.angle_gamma 90 _cell.entry_id 6YMA _cell.length_a 42.55 _cell.length_b 41.53 _cell.length_c 72.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N1 AZM . A AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C4 H6 N4 O3 S2' _chem_comp.formula_weight 222.245 _chem_comp.id AZM _chem_comp.mon_nstd_flag . _chem_comp.name 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N3 AZM doub 70 n y C1 S1 AZM sing 71 n n C1 S2 AZM sing 72 n y C2 N2 AZM doub 73 n y C2 N4 AZM sing 74 n n C2 S2 AZM sing 75 n y C3 C4 AZM sing 76 n n C3 N4 AZM sing 77 n n C3 O3 AZM doub 78 n n C4 H41 AZM sing 79 n n C4 H42 AZM sing 80 n n C4 H43 AZM sing 81 n n N1 S1 AZM sing 82 n n N1 HN11 AZM sing 83 n n N1 HN12 AZM sing 84 n n N2 N3 AZM sing 85 n y N4 HN4 AZM sing 86 n n O1 S1 AZM doub 87 n n O2 S1 AZM doub 88 n n # _atom_sites.entry_id 6YMA _atom_sites.fract_transf_matrix[1][1] 0.023502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 AZM A 1 302 401 AZM AZM . D 4 DMS A 1 303 501 DMS DMS . E 5 HOH A 1 401 1008 HOH HOH . E 5 HOH A 2 402 1017 HOH HOH . E 5 HOH A 3 403 1018 HOH HOH . E 5 HOH A 4 404 1029 HOH HOH . E 5 HOH A 5 405 1012 HOH HOH . E 5 HOH A 6 406 1006 HOH HOH . E 5 HOH A 7 407 1022 HOH HOH . E 5 HOH A 8 408 1009 HOH HOH . E 5 HOH A 9 409 1023 HOH HOH . E 5 HOH A 10 410 1004 HOH HOH . E 5 HOH A 11 411 1003 HOH HOH . E 5 HOH A 12 412 1005 HOH HOH . E 5 HOH A 13 413 1020 HOH HOH . E 5 HOH A 14 414 1001 HOH HOH . E 5 HOH A 15 415 1026 HOH HOH . E 5 HOH A 16 416 1010 HOH HOH . E 5 HOH A 17 417 1002 HOH HOH . E 5 HOH A 18 418 1014 HOH HOH . E 5 HOH A 19 419 1015 HOH HOH . E 5 HOH A 20 420 1007 HOH HOH . E 5 HOH A 21 421 1028 HOH HOH . E 5 HOH A 22 422 1025 HOH HOH . E 5 HOH A 23 423 1013 HOH HOH . E 5 HOH A 24 424 1027 HOH HOH . E 5 HOH A 25 425 1016 HOH HOH . E 5 HOH A 26 426 1019 HOH HOH . E 5 HOH A 27 427 1024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AZM . . . C 3 -5.325 2.423 15.627 1 20.57 ? C1 AZM 302 A 1 HETATM 2 C C2 AZM . . . C 3 -4.928 4.228 14.16 1 20.57 ? C2 AZM 302 A 1 HETATM 3 C C3 AZM . . . C 3 -5.996 6.11 13.092 1 20.57 ? C3 AZM 302 A 1 HETATM 4 C C4 AZM . . . C 3 -5.952 6.545 11.656 1 20.57 ? C4 AZM 302 A 1 HETATM 5 N N1 AZM . . . C 3 -5.531 -0.212 16.152 1 20.57 ? N1 AZM 302 A 1 HETATM 6 N N2 AZM . . . C 3 -3.774 3.614 14.543 1 20.57 ? N2 AZM 302 A 1 HETATM 7 N N3 AZM . . . C 3 -4 2.498 15.448 1 20.57 ? N3 AZM 302 A 1 HETATM 8 N N4 AZM . . . C 3 -4.901 5.491 13.539 1 20.57 ? N4 AZM 302 A 1 HETATM 9 O O1 AZM . . . C 3 -5.549 1.432 18.006 1 20.57 ? O1 AZM 302 A 1 HETATM 10 O O2 AZM . . . C 3 -7.487 1.275 16.498 1 20.57 ? O2 AZM 302 A 1 HETATM 11 O O3 AZM . . . C 3 -6.986 6.333 13.806 1 20.57 ? O3 AZM 302 A 1 HETATM 12 S S1 AZM . . . C 3 -6.035 1.224 16.645 1 20.57 ? S1 AZM 302 A 1 HETATM 13 S S2 AZM . . . C 3 -6.259 3.587 14.79 1 20.57 ? S2 AZM 302 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 460 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #