data_6YMH
#
_model_server_result.job_id            '_dD3NyTZWObQ5NenJMm_CA' 
_model_server_result.datetime_utc      '2024-12-23 09:38:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ymh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    6YMH 
#
_exptl.entry_id    6YMH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YMH 
_cell.length_a            54.164 
_cell.length_b            54.164 
_cell.length_c            271.968 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YMH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     6YMH 
_atom_sites.fract_transf_matrix[1][1]    0.018462 
_atom_sites.fract_transf_matrix[1][2]    0.010659 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021319 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN AAA 1 301 250 FMN FMN . 
D 3 SO4 AAA 1 302 1 SO4 SO4 . 
E 2 FMN BBB 1 301 250 FMN FMN . 
F 4 PLP BBB 1 302 1 PLP PLP . 
G 5 HOH AAA 1 401 4 HOH HOH . 
G 5 HOH AAA 2 402 68 HOH HOH . 
G 5 HOH AAA 3 403 31 HOH HOH . 
G 5 HOH AAA 4 404 123 HOH HOH . 
G 5 HOH AAA 5 405 79 HOH HOH . 
G 5 HOH AAA 6 406 162 HOH HOH . 
G 5 HOH AAA 7 407 35 HOH HOH . 
G 5 HOH AAA 8 408 5 HOH HOH . 
G 5 HOH AAA 9 409 122 HOH HOH . 
G 5 HOH AAA 10 410 149 HOH HOH . 
G 5 HOH AAA 11 411 86 HOH HOH . 
G 5 HOH AAA 12 412 98 HOH HOH . 
G 5 HOH AAA 13 413 147 HOH HOH . 
G 5 HOH AAA 14 414 71 HOH HOH . 
G 5 HOH AAA 15 415 56 HOH HOH . 
H 5 HOH BBB 1 401 24 HOH HOH . 
H 5 HOH BBB 2 402 66 HOH HOH . 
H 5 HOH BBB 3 403 20 HOH HOH . 
H 5 HOH BBB 4 404 6 HOH HOH . 
H 5 HOH BBB 5 405 176 HOH HOH . 
H 5 HOH BBB 6 406 52 HOH HOH . 
H 5 HOH BBB 7 407 27 HOH HOH . 
H 5 HOH BBB 8 408 43 HOH HOH . 
H 5 HOH BBB 9 409 21 HOH HOH . 
H 5 HOH BBB 10 410 115 HOH HOH . 
H 5 HOH BBB 11 411 39 HOH HOH . 
H 5 HOH BBB 12 412 29 HOH HOH . 
H 5 HOH BBB 13 413 23 HOH HOH . 
H 5 HOH BBB 14 414 22 HOH HOH . 
H 5 HOH BBB 15 415 3 HOH HOH . 
H 5 HOH BBB 16 416 34 HOH HOH . 
H 5 HOH BBB 17 417 107 HOH HOH . 
H 5 HOH BBB 18 418 41 HOH HOH . 
H 5 HOH BBB 19 419 55 HOH HOH . 
H 5 HOH BBB 20 420 177 HOH HOH . 
H 5 HOH BBB 21 421 37 HOH HOH . 
H 5 HOH BBB 22 422 92 HOH HOH . 
H 5 HOH BBB 23 423 28 HOH HOH . 
H 5 HOH BBB 24 424 80 HOH HOH . 
H 5 HOH BBB 25 425 125 HOH HOH . 
H 5 HOH BBB 26 426 57 HOH HOH . 
H 5 HOH BBB 27 427 128 HOH HOH . 
H 5 HOH BBB 28 428 53 HOH HOH . 
H 5 HOH BBB 29 429 126 HOH HOH . 
H 5 HOH BBB 30 430 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 2 -23.648 17.826 13.09 1 57.31 ? N1 FMN 301 BBB 1 
HETATM 2 C C2 FMN . . . E 2 -23.509 18.895 13.914 1 56.62 ? C2 FMN 301 BBB 1 
HETATM 3 O O2 FMN . . . E 2 -22.365 19.222 14.305 1 52.17 ? O2 FMN 301 BBB 1 
HETATM 4 N N3 FMN . . . E 2 -24.575 19.612 14.319 1 59.63 ? N3 FMN 301 BBB 1 
HETATM 5 C C4 FMN . . . E 2 -25.833 19.317 13.945 1 56.58 ? C4 FMN 301 BBB 1 
HETATM 6 O O4 FMN . . . E 2 -26.811 19.983 14.319 1 59.41 ? O4 FMN 301 BBB 1 
HETATM 7 C C4A FMN . . . E 2 -26.061 18.169 13.066 1 57.98 ? C4A FMN 301 BBB 1 
HETATM 8 N N5 FMN . . . E 2 -27.306 17.835 12.661 1 58.35 ? N5 FMN 301 BBB 1 
HETATM 9 C C5A FMN . . . E 2 -27.498 16.79 11.834 1 54.66 ? C5A FMN 301 BBB 1 
HETATM 10 C C6 FMN . . . E 2 -28.795 16.494 11.449 1 52.27 ? C6 FMN 301 BBB 1 
HETATM 11 C C7 FMN . . . E 2 -29.069 15.435 10.608 1 52.34 ? C7 FMN 301 BBB 1 
HETATM 12 C C7M FMN . . . E 2 -30.499 15.145 10.213 1 52.95 ? C7M FMN 301 BBB 1 
HETATM 13 C C8 FMN . . . E 2 -27.94 14.609 10.12 1 55.82 ? C8 FMN 301 BBB 1 
HETATM 14 C C8M FMN . . . E 2 -28.204 13.443 9.203 1 59.28 ? C8M FMN 301 BBB 1 
HETATM 15 C C9 FMN . . . E 2 -26.629 14.901 10.504 1 58.32 ? C9 FMN 301 BBB 1 
HETATM 16 C C9A FMN . . . E 2 -26.337 15.971 11.358 1 56 ? C9A FMN 301 BBB 1 
HETATM 17 N N10 FMN . . . E 2 -25.015 16.316 11.785 1 53.85 ? N10 FMN 301 BBB 1 
HETATM 18 C C10 FMN . . . E 2 -24.858 17.416 12.642 1 55.78 ? C10 FMN 301 BBB 1 
HETATM 19 C C1' FMN . . . E 2 -23.798 15.594 11.407 1 53.9 ? C1' FMN 301 BBB 1 
HETATM 20 C C2' FMN . . . E 2 -23.105 16.286 10.253 1 55.59 ? C2' FMN 301 BBB 1 
HETATM 21 O O2' FMN . . . E 2 -23.911 16.033 9.097 1 51.72 ? O2' FMN 301 BBB 1 
HETATM 22 C C3' FMN . . . E 2 -21.649 15.796 10.104 1 54.81 ? C3' FMN 301 BBB 1 
HETATM 23 O O3' FMN . . . E 2 -21.611 14.36 9.99 1 58.93 ? O3' FMN 301 BBB 1 
HETATM 24 C C4' FMN . . . E 2 -20.732 16.198 11.272 1 51.56 ? C4' FMN 301 BBB 1 
HETATM 25 O O4' FMN . . . E 2 -21.17 17.406 11.928 1 46.22 ? O4' FMN 301 BBB 1 
HETATM 26 C C5' FMN . . . E 2 -19.271 16.298 10.816 1 50.74 ? C5' FMN 301 BBB 1 
HETATM 27 O O5' FMN . . . E 2 -19.036 17.218 9.748 1 47.48 ? O5' FMN 301 BBB 1 
HETATM 28 P P FMN . . . E 2 -17.549 17.714 9.439 1 49.93 ? P FMN 301 BBB 1 
HETATM 29 O O1P FMN . . . E 2 -17.565 18.281 8.056 1 52.32 ? O1P FMN 301 BBB 1 
HETATM 30 O O2P FMN . . . E 2 -17.265 18.745 10.506 1 48.68 ? O2P FMN 301 BBB 1 
HETATM 31 O O3P FMN . . . E 2 -16.704 16.469 9.469 1 56.7 ? O3P FMN 301 BBB 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#