data_6YMQ
#
_model_server_result.job_id            XmYLYAPPpPTuqCai3rXvLA 
_model_server_result.datetime_utc      '2025-04-01 23:30:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ymq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    6YMQ 
#
_exptl.entry_id    6YMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YMQ 
_cell.length_a            167.51 
_cell.length_b            180.77 
_cell.length_c            125.51 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YMQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,M,T,V 1 1 
B,G,O,X 2 1 
C,H,P,Q,Y 3 1 
D,F,N,U,W 4 1 
I,L,R 5 1 
J,K,S 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 161 A CYS 161 1_555 A SG CYS 226 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 161 B CYS 161 1_555 B SG CYS 226 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 24 C CYS 24 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 161 C CYS 161 1_555 C SG CYS 226 C CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 161 D CYS 161 1_555 D SG CYS 226 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 E SG CYS 21 G CYS 36 1_555 E SG CYS 95 G CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 E SG CYS 36 G CYS 51 1_555 E SG CYS 45 G CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 F SG CYS 21 H CYS 36 1_555 F SG CYS 95 H CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 36 H CYS 51 1_555 F SG CYS 45 H CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 G SG CYS 21 I CYS 36 1_555 G SG CYS 95 I CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 G SG CYS 36 I CYS 51 1_555 G SG CYS 45 I CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 H SG CYS 21 J CYS 36 1_555 H SG CYS 95 J CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf16 H SG CYS 36 J CYS 51 1_555 H SG CYS 45 J CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 I SG CYS 21 K CYS 36 1_555 I SG CYS 95 K CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 I SG CYS 36 K CYS 51 1_555 I SG CYS 45 K CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf19 J SG CYS 21 D000 CYS 36 1_555 J SG CYS 95 D000 CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 J SG CYS 36 D000 CYS 51 1_555 J SG CYS 45 D000 CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 K SG CYS 24 E CYS 24 1_555 K SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf22 K SG CYS 161 E CYS 161 1_555 K SG CYS 226 E CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf23 L SG CYS 24 F CYS 24 1_555 L SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 L SG CYS 161 F CYS 161 1_555 L SG CYS 226 F CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 F ND2 ASN 64 H ASN 79 1_555 N C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 H ND2 ASN 64 J ASN 79 1_555 P C1 NAG . J NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 I ND2 ASN 64 K ASN 79 1_555 R C1 NAG . K NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 J ND2 ASN 64 D000 ASN 79 1_555 S C1 NAG . D000 NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 258 n n 
C1 O1 NAG sing 259 n n 
C1 O5 NAG sing 260 n n 
C1 H1 NAG sing 261 n n 
C2 C3 NAG sing 262 n n 
C2 N2 NAG sing 263 n n 
C2 H2 NAG sing 264 n n 
C3 C4 NAG sing 265 n n 
C3 O3 NAG sing 266 n n 
C3 H3 NAG sing 267 n n 
C4 C5 NAG sing 268 n n 
C4 O4 NAG sing 269 n n 
C4 H4 NAG sing 270 n n 
C5 C6 NAG sing 271 n n 
C5 O5 NAG sing 272 n n 
C5 H5 NAG sing 273 n n 
C6 O6 NAG sing 274 n n 
C6 H61 NAG sing 275 n n 
C6 H62 NAG sing 276 n n 
C7 C8 NAG sing 277 n n 
C7 N2 NAG sing 278 n n 
C7 O7 NAG doub 279 n n 
C8 H81 NAG sing 280 n n 
C8 H82 NAG sing 281 n n 
C8 H83 NAG sing 282 n n 
N2 HN2 NAG sing 283 n n 
O1 HO1 NAG sing 284 n n 
O3 HO3 NAG sing 285 n n 
O4 HO4 NAG sing 286 n n 
O6 HO6 NAG sing 287 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6YMQ 
_atom_sites.fract_transf_matrix[1][1]    0.00597 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005532 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 NAG G 1 201 202 NAG NAG . 
N 3 NAG H 1 201 202 NAG NAG . 
O 3 NAG I 1 201 202 NAG NAG . 
P 3 NAG J 1 201 202 NAG NAG . 
Q 4 MPD J 1 202 301 MPD MPD . 
R 3 NAG K 1 201 202 NAG NAG . 
S 3 NAG D000 1 201 202 NAG NAG . 
T 5 HOH A 1 301 26 HOH HOH . 
T 5 HOH A 2 302 2 HOH HOH . 
T 5 HOH A 3 303 12 HOH HOH . 
T 5 HOH A 4 304 19 HOH HOH . 
U 5 HOH D 1 301 9 HOH HOH . 
U 5 HOH D 2 302 16 HOH HOH . 
U 5 HOH D 3 303 10 HOH HOH . 
U 5 HOH D 4 304 25 HOH HOH . 
V 5 HOH G 1 301 13 HOH HOH . 
W 5 HOH H 1 301 11 HOH HOH . 
X 5 HOH I 1 301 14 HOH HOH . 
Y 5 HOH J 1 301 24 HOH HOH . 
Y 5 HOH J 2 302 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . M 3 59.637 16.491 25.573 1 78.83 ? C1 NAG 201 G 1 
HETATM 2 C C2 NAG . . . M 3 59.198 15.575 24.435 1 80 ? C2 NAG 201 G 1 
HETATM 3 C C3 NAG . . . M 3 57.73 15.196 24.602 1 81.71 ? C3 NAG 201 G 1 
HETATM 4 C C4 NAG . . . M 3 57.488 14.606 25.985 1 81.86 ? C4 NAG 201 G 1 
HETATM 5 C C5 NAG . . . M 3 58.011 15.55 27.065 1 80.63 ? C5 NAG 201 G 1 
HETATM 6 C C6 NAG . . . M 3 57.927 14.963 28.454 1 82.74 ? C6 NAG 201 G 1 
HETATM 7 C C7 NAG . . . M 3 59.954 15.557 22.1 1 81.78 ? C7 NAG 201 G 1 
HETATM 8 C C8 NAG . . . M 3 60.114 16.358 20.843 1 81.67 ? C8 NAG 201 G 1 
HETATM 9 N N2 NAG . . . M 3 59.422 16.202 23.143 1 81.94 ? N2 NAG 201 G 1 
HETATM 10 O O3 NAG . . . M 3 57.366 14.254 23.599 1 82.78 ? O3 NAG 201 G 1 
HETATM 11 O O4 NAG . . . M 3 56.095 14.393 26.185 1 83.53 ? O4 NAG 201 G 1 
HETATM 12 O O5 NAG . . . M 3 59.395 15.849 26.826 1 79.06 ? O5 NAG 201 G 1 
HETATM 13 O O6 NAG . . . M 3 59.162 14.381 28.848 1 79.15 ? O6 NAG 201 G 1 
HETATM 14 O O7 NAG . . . M 3 60.291 14.379 22.168 1 79.74 ? O7 NAG 201 G 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#