data_6YNH # _model_server_result.job_id MgZEqc_WpVzop02AKxHRyw _model_server_result.datetime_utc '2024-11-22 00:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ynh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3001}' # _entry.id 6YNH # _exptl.entry_id 6YNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.33 _cell.angle_gamma 90 _cell.entry_id 6YNH _cell.length_a 87.022 _cell.length_b 111.299 _cell.length_c 69.742 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 151 B SER 151 1_555 A N CSU 152 B CSU 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C SER 151 B SER 151 1_555 A N CSU 152 B CSU 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C CSU 152 B CSU 152 1_555 A N THR 153 B THR 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C CSU 152 B CSU 152 1_555 A N THR 153 B THR 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B C SER 151 D SER 151 1_555 B N CSU 152 D CSU 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.343 ? covale ? covale6 B C SER 151 D SER 151 1_555 B N CSU 152 D CSU 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale7 B C CSU 152 D CSU 152 1_555 B N THR 153 D THR 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale8 B C CSU 152 D CSU 152 1_555 B N THR 153 D THR 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale9 C C SER 151 F SER 151 1_555 C N CSU 152 F CSU 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.337 ? covale ? covale10 C C SER 151 F SER 151 1_555 C N CSU 152 F CSU 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.346 ? covale ? covale11 C C CSU 152 F CSU 152 1_555 C N THR 153 F THR 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 C C CSU 152 F CSU 152 1_555 C N THR 153 F THR 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale13 D C SER 151 G SER 151 1_555 D N CSU 152 G CSU 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.341 ? covale ? covale14 D C SER 151 G SER 151 1_555 D N CSU 152 G CSU 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.343 ? covale ? covale15 D C CSU 152 G CSU 152 1_555 D N THR 153 G THR 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale16 D C CSU 152 G CSU 152 1_555 D N THR 153 G THR 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C20 H42 O11' _chem_comp.formula_weight 458.541 _chem_comp.id XPE _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DECAETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 XPE sing 393 n n O1 HO1 XPE sing 394 n n C2 C3 XPE sing 395 n n C2 H21 XPE sing 396 n n C2 H22 XPE sing 397 n n C3 O4 XPE sing 398 n n C3 H31A XPE sing 399 n n C3 H32 XPE sing 400 n n O4 C5 XPE sing 401 n n C5 C6 XPE sing 402 n n C5 H51 XPE sing 403 n n C5 H52 XPE sing 404 n n C6 O7 XPE sing 405 n n C6 H61 XPE sing 406 n n C6 H62 XPE sing 407 n n O7 C8 XPE sing 408 n n C8 C9 XPE sing 409 n n C8 H81 XPE sing 410 n n C8 H82 XPE sing 411 n n C9 O10 XPE sing 412 n n C9 H91 XPE sing 413 n n C9 H92 XPE sing 414 n n O10 C11 XPE sing 415 n n C11 C12 XPE sing 416 n n C11 H111 XPE sing 417 n n C11 H112 XPE sing 418 n n C12 O13 XPE sing 419 n n C12 H121 XPE sing 420 n n C12 H122 XPE sing 421 n n O13 C14 XPE sing 422 n n C14 C15 XPE sing 423 n n C14 H141 XPE sing 424 n n C14 H142 XPE sing 425 n n C15 O16 XPE sing 426 n n C15 H151 XPE sing 427 n n C15 H152 XPE sing 428 n n O16 C17 XPE sing 429 n n C17 C18 XPE sing 430 n n C17 H171 XPE sing 431 n n C17 H172 XPE sing 432 n n C18 O19 XPE sing 433 n n C18 H181 XPE sing 434 n n C18 H182 XPE sing 435 n n O19 C20 XPE sing 436 n n C20 C21 XPE sing 437 n n C20 H201 XPE sing 438 n n C20 H202 XPE sing 439 n n C21 O22 XPE sing 440 n n C21 H211 XPE sing 441 n n C21 H212 XPE sing 442 n n O22 C23 XPE sing 443 n n C23 C24 XPE sing 444 n n C23 H231 XPE sing 445 n n C23 H232 XPE sing 446 n n C24 O25 XPE sing 447 n n C24 H241 XPE sing 448 n n C24 H242 XPE sing 449 n n O25 C26 XPE sing 450 n n C26 C27 XPE sing 451 n n C26 H261 XPE sing 452 n n C26 H262 XPE sing 453 n n C27 O28 XPE sing 454 n n C27 H271 XPE sing 455 n n C27 H272 XPE sing 456 n n O28 C29 XPE sing 457 n n C29 C30 XPE sing 458 n n C29 H291 XPE sing 459 n n C29 H292 XPE sing 460 n n C30 O31 XPE sing 461 n n C30 H301 XPE sing 462 n n C30 H302 XPE sing 463 n n O31 H31 XPE sing 464 n n # _atom_sites.entry_id 6YNH _atom_sites.fract_transf_matrix[1][1] 0.011491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001683 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XPE B 1 3001 3001 XPE XPE . F 2 XPE D 1 3001 3001 XPE XPE . G 2 XPE F 1 3001 3001 XPE XPE . H 2 XPE G 1 3001 3001 XPE XPE . I 3 HOH B 1 3101 427 HOH HOH . I 3 HOH B 2 3102 401 HOH HOH . I 3 HOH B 3 3103 402 HOH HOH . I 3 HOH B 4 3104 405 HOH HOH . I 3 HOH B 5 3105 408 HOH HOH . I 3 HOH B 6 3106 416 HOH HOH . I 3 HOH B 7 3107 402 HOH HOH . I 3 HOH B 8 3108 407 HOH HOH . I 3 HOH B 9 3109 406 HOH HOH . I 3 HOH B 10 3110 409 HOH HOH . I 3 HOH B 11 3111 430 HOH HOH . I 3 HOH B 12 3112 431 HOH HOH . I 3 HOH B 13 3113 428 HOH HOH . I 3 HOH B 14 3114 410 HOH HOH . I 3 HOH B 15 3115 429 HOH HOH . I 3 HOH B 16 3116 411 HOH HOH . I 3 HOH B 17 3117 433 HOH HOH . I 3 HOH B 18 3118 418 HOH HOH . I 3 HOH B 19 3119 404 HOH HOH . I 3 HOH B 20 3120 417 HOH HOH . I 3 HOH B 21 3121 420 HOH HOH . I 3 HOH B 22 3122 403 HOH HOH . I 3 HOH B 23 3123 419 HOH HOH . I 3 HOH B 24 3124 432 HOH HOH . I 3 HOH B 25 3125 426 HOH HOH . J 3 HOH D 1 3101 483 HOH HOH . J 3 HOH D 2 3102 407 HOH HOH . J 3 HOH D 3 3103 434 HOH HOH . J 3 HOH D 4 3104 421 HOH HOH . J 3 HOH D 5 3105 408 HOH HOH . J 3 HOH D 6 3106 416 HOH HOH . J 3 HOH D 7 3107 422 HOH HOH . J 3 HOH D 8 3108 410 HOH HOH . J 3 HOH D 9 3109 436 HOH HOH . J 3 HOH D 10 3110 414 HOH HOH . J 3 HOH D 11 3111 413 HOH HOH . J 3 HOH D 12 3112 412 HOH HOH . J 3 HOH D 13 3113 404 HOH HOH . J 3 HOH D 14 3114 425 HOH HOH . J 3 HOH D 15 3115 443 HOH HOH . J 3 HOH D 16 3116 401 HOH HOH . J 3 HOH D 17 3117 406 HOH HOH . J 3 HOH D 18 3118 409 HOH HOH . J 3 HOH D 19 3119 437 HOH HOH . J 3 HOH D 20 3120 440 HOH HOH . J 3 HOH D 21 3121 411 HOH HOH . J 3 HOH D 22 3122 448 HOH HOH . J 3 HOH D 23 3123 442 HOH HOH . J 3 HOH D 24 3124 418 HOH HOH . J 3 HOH D 25 3125 415 HOH HOH . J 3 HOH D 26 3126 403 HOH HOH . J 3 HOH D 27 3127 439 HOH HOH . J 3 HOH D 28 3128 486 HOH HOH . J 3 HOH D 29 3129 447 HOH HOH . J 3 HOH D 30 3130 441 HOH HOH . J 3 HOH D 31 3131 487 HOH HOH . J 3 HOH D 32 3132 423 HOH HOH . J 3 HOH D 33 3133 438 HOH HOH . J 3 HOH D 34 3134 446 HOH HOH . J 3 HOH D 35 3135 445 HOH HOH . J 3 HOH D 36 3136 435 HOH HOH . J 3 HOH D 37 3137 424 HOH HOH . J 3 HOH D 38 3138 444 HOH HOH . K 3 HOH F 1 3101 452 HOH HOH . K 3 HOH F 2 3102 413 HOH HOH . K 3 HOH F 3 3103 407 HOH HOH . K 3 HOH F 4 3104 456 HOH HOH . K 3 HOH F 5 3105 404 HOH HOH . K 3 HOH F 6 3106 414 HOH HOH . K 3 HOH F 7 3107 455 HOH HOH . K 3 HOH F 8 3108 402 HOH HOH . K 3 HOH F 9 3109 454 HOH HOH . K 3 HOH F 10 3110 458 HOH HOH . K 3 HOH F 11 3111 449 HOH HOH . K 3 HOH F 12 3112 402 HOH HOH . K 3 HOH F 13 3113 411 HOH HOH . K 3 HOH F 14 3114 405 HOH HOH . K 3 HOH F 15 3115 457 HOH HOH . K 3 HOH F 16 3116 417 HOH HOH . K 3 HOH F 17 3117 409 HOH HOH . K 3 HOH F 18 3118 461 HOH HOH . K 3 HOH F 19 3119 412 HOH HOH . K 3 HOH F 20 3120 401 HOH HOH . K 3 HOH F 21 3121 462 HOH HOH . K 3 HOH F 22 3122 465 HOH HOH . K 3 HOH F 23 3123 415 HOH HOH . K 3 HOH F 24 3124 459 HOH HOH . K 3 HOH F 25 3125 469 HOH HOH . K 3 HOH F 26 3126 468 HOH HOH . K 3 HOH F 27 3127 453 HOH HOH . K 3 HOH F 28 3128 466 HOH HOH . K 3 HOH F 29 3129 484 HOH HOH . K 3 HOH F 30 3130 451 HOH HOH . K 3 HOH F 31 3131 460 HOH HOH . K 3 HOH F 32 3132 463 HOH HOH . K 3 HOH F 33 3133 488 HOH HOH . K 3 HOH F 34 3134 450 HOH HOH . K 3 HOH F 35 3135 467 HOH HOH . K 3 HOH F 36 3136 424 HOH HOH . K 3 HOH F 37 3137 464 HOH HOH . L 3 HOH G 1 3101 485 HOH HOH . L 3 HOH G 2 3102 425 HOH HOH . L 3 HOH G 3 3103 416 HOH HOH . L 3 HOH G 4 3104 413 HOH HOH . L 3 HOH G 5 3105 421 HOH HOH . L 3 HOH G 6 3106 414 HOH HOH . L 3 HOH G 7 3107 408 HOH HOH . L 3 HOH G 8 3108 471 HOH HOH . L 3 HOH G 9 3109 475 HOH HOH . L 3 HOH G 10 3110 478 HOH HOH . L 3 HOH G 11 3111 406 HOH HOH . L 3 HOH G 12 3112 473 HOH HOH . L 3 HOH G 13 3113 401 HOH HOH . L 3 HOH G 14 3114 415 HOH HOH . L 3 HOH G 15 3115 479 HOH HOH . L 3 HOH G 16 3116 482 HOH HOH . L 3 HOH G 17 3117 405 HOH HOH . L 3 HOH G 18 3118 476 HOH HOH . L 3 HOH G 19 3119 480 HOH HOH . L 3 HOH G 20 3120 489 HOH HOH . L 3 HOH G 21 3121 422 HOH HOH . L 3 HOH G 22 3122 412 HOH HOH . L 3 HOH G 23 3123 410 HOH HOH . L 3 HOH G 24 3124 472 HOH HOH . L 3 HOH G 25 3125 426 HOH HOH . L 3 HOH G 26 3126 423 HOH HOH . L 3 HOH G 27 3127 403 HOH HOH . L 3 HOH G 28 3128 474 HOH HOH . L 3 HOH G 29 3129 419 HOH HOH . L 3 HOH G 30 3130 470 HOH HOH . L 3 HOH G 31 3131 481 HOH HOH . L 3 HOH G 32 3132 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 XPE . . . G 2 -51.638 25.626 8.139 1 51.01 ? O19 XPE 3001 F 1 HETATM 2 C C20 XPE . . . G 2 -50.986 24.378 8.357 1 51.59 ? C20 XPE 3001 F 1 HETATM 3 C C21 XPE . . . G 2 -51.295 23.379 7.269 1 52.25 ? C21 XPE 3001 F 1 HETATM 4 O O22 XPE . . . G 2 -50.805 23.844 6.011 1 53.03 ? O22 XPE 3001 F 1 HETATM 5 C C23 XPE . . . G 2 -51.291 23.098 4.902 1 53.87 ? C23 XPE 3001 F 1 HETATM 6 C C24 XPE . . . G 2 -50.72 23.63 3.623 1 54.84 ? C24 XPE 3001 F 1 HETATM 7 O O25 XPE . . . G 2 -51.218 24.931 3.366 1 56.34 ? O25 XPE 3001 F 1 HETATM 8 C C26 XPE . . . G 2 -51.203 25.281 1.978 1 57.58 ? C26 XPE 3001 F 1 HETATM 9 C C27 XPE . . . G 2 -51.619 26.717 1.786 1 58.09 ? C27 XPE 3001 F 1 HETATM 10 O O28 XPE . . . G 2 -52.943 26.924 2.284 1 58.06 ? O28 XPE 3001 F 1 HETATM 11 H H201 XPE . . . G 2 -51.28 23.947 9.313 1 61.91 ? H201 XPE 3001 F 1 HETATM 12 H H202 XPE . . . G 2 -49.91 24.542 8.42 1 61.91 ? H202 XPE 3001 F 1 HETATM 13 H H211 XPE . . . G 2 -52.365 23.184 7.214 1 62.71 ? H211 XPE 3001 F 1 HETATM 14 H H212 XPE . . . G 2 -50.84 22.422 7.53 1 62.71 ? H212 XPE 3001 F 1 HETATM 15 H H231 XPE . . . G 2 -52.376 23.178 4.85 1 64.64 ? H231 XPE 3001 F 1 HETATM 16 H H232 XPE . . . G 2 -51.076 22.04 5.035 1 64.64 ? H232 XPE 3001 F 1 HETATM 17 H H241 XPE . . . G 2 -50.944 22.965 2.793 1 65.81 ? H241 XPE 3001 F 1 HETATM 18 H H242 XPE . . . G 2 -49.639 23.679 3.709 1 65.81 ? H242 XPE 3001 F 1 HETATM 19 H H261 XPE . . . G 2 -51.885 24.655 1.405 1 69.1 ? H261 XPE 3001 F 1 HETATM 20 H H262 XPE . . . G 2 -50.215 25.114 1.553 1 69.1 ? H262 XPE 3001 F 1 HETATM 21 H H271 XPE . . . G 2 -51.556 26.987 0.73 1 69.71 ? H271 XPE 3001 F 1 HETATM 22 H H272 XPE . . . G 2 -50.909 27.364 2.297 1 69.71 ? H272 XPE 3001 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #