data_6YO0
#
_model_server_result.job_id            KYEyg6_YtpMem-eIsydtxg 
_model_server_result.datetime_utc      '2024-11-04 22:40:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yo0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":900}' 
#
_entry.id    6YO0 
#
_exptl.entry_id    6YO0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YO0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YO0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 M N N 
? 9 Q N N 
? 9 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E N LYS 206 B1 LYS 206 1_555 Q O2B ATP . B1 ATP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale2 E NH2 ARG 404 B1 ARG 404 1_555 U O2A ADP . E1 ADP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale3 Q O3G ATP . B1 ATP 900 1_555 F NH1 ARG 375 F1 ARG 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 C OG1 THR 207 C1 THR 207 1_555 N MG MG . C1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 M O3G ATP . C1 ATP 900 1_555 N MG MG . C1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc3 M O1B ATP . C1 ATP 900 1_555 N MG MG . C1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc4 D OG1 THR 182 D1 THR 182 1_555 P MG MG . D1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc5 D OE2 GLU 207 D1 GLU 207 1_555 P MG MG . D1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc6 O O3B ADP . D1 ADP 900 1_555 P MG MG . D1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc7 E OG1 THR 207 B1 THR 207 1_555 R MG MG . B1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc8 Q O1G ATP . B1 ATP 900 1_555 R MG MG . B1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc9 Q O3B ATP . B1 ATP 900 1_555 R MG MG . B1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc10 G OG1 THR 207 A1 THR 207 1_555 T MG MG . A1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc11 S O3G ATP . A1 ATP 900 1_555 T MG MG . A1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc12 S O1B ATP . A1 ATP 900 1_555 T MG MG . A1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc13 H OG1 THR 182 E1 THR 182 1_555 V MG MG . E1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc14 U O2B ADP . E1 ADP 900 1_555 V MG MG . E1 MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YO0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 9 ATP C1 1 900 900 ATP ATP . 
N 10 MG C1 1 1001 1001 MG MG . 
O 11 ADP D1 1 900 900 ADP ADP . 
P 10 MG D1 1 1001 1001 MG MG . 
Q 9 ATP B1 1 900 900 ATP ATP . 
R 10 MG B1 1 1001 1001 MG MG . 
S 9 ATP A1 1 900 900 ATP ATP . 
T 10 MG A1 1 1001 1001 MG MG . 
U 11 ADP E1 1 900 900 ADP ADP . 
V 10 MG E1 1 1001 1001 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 9 161.153 293.952 346.292 1 73.1 ? PG ATP 900 B1 1 
HETATM 2 O O1G ATP . . . Q 9 161.069 294.293 347.756 1 73.1 ? O1G ATP 900 B1 1 
HETATM 3 O O2G ATP . . . Q 9 162.55 293.472 345.982 1 73.1 ? O2G ATP 900 B1 1 
HETATM 4 O O3G ATP . . . Q 9 160.864 295.19 345.479 1 73.1 ? O3G ATP 900 B1 1 
HETATM 5 P PB ATP . . . Q 9 159.317 292.628 344.468 1 73.1 ? PB ATP 900 B1 1 
HETATM 6 O O1B ATP . . . Q 9 160.33 292.666 343.374 1 73.1 ? O1B ATP 900 B1 1 
HETATM 7 O O2B ATP . . . Q 9 158.473 291.385 344.382 1 73.1 ? O2B ATP 900 B1 1 
HETATM 8 O O3B ATP . . . Q 9 160.032 292.772 345.944 1 73.1 ? O3B ATP 900 B1 1 
HETATM 9 P PA ATP . . . Q 9 156.827 294.034 343.776 1 73.1 ? PA ATP 900 B1 1 
HETATM 10 O O1A ATP . . . Q 9 155.928 294.816 344.671 1 73.1 ? O1A ATP 900 B1 1 
HETATM 11 O O2A ATP . . . Q 9 156.258 292.665 343.577 1 73.1 ? O2A ATP 900 B1 1 
HETATM 12 O O3A ATP . . . Q 9 158.347 293.962 344.408 1 73.1 ? O3A ATP 900 B1 1 
HETATM 13 O O5' ATP . . . Q 9 157.001 294.765 342.354 1 73.1 ? O5' ATP 900 B1 1 
HETATM 14 C C5' ATP . . . Q 9 158.18 295.516 342.253 1 73.1 ? C5' ATP 900 B1 1 
HETATM 15 C C4' ATP . . . Q 9 158.081 296.463 341.006 1 73.1 ? C4' ATP 900 B1 1 
HETATM 16 O O4' ATP . . . Q 9 157.797 295.605 339.754 1 73.1 ? O4' ATP 900 B1 1 
HETATM 17 C C3' ATP . . . Q 9 157.1 297.276 341.142 1 73.1 ? C3' ATP 900 B1 1 
HETATM 18 O O3' ATP . . . Q 9 157.582 298.649 341.01 1 73.1 ? O3' ATP 900 B1 1 
HETATM 19 C C2' ATP . . . Q 9 156.003 296.979 339.939 1 73.1 ? C2' ATP 900 B1 1 
HETATM 20 O O2' ATP . . . Q 9 155.587 298.256 339.357 1 73.1 ? O2' ATP 900 B1 1 
HETATM 21 C C1' ATP . . . Q 9 156.587 296.288 339.05 1 73.1 ? C1' ATP 900 B1 1 
HETATM 22 N N9 ATP . . . Q 9 155.678 295.25 338.509 1 73.1 ? N9 ATP 900 B1 1 
HETATM 23 C C8 ATP . . . Q 9 155.628 294.132 339.227 1 73.1 ? C8 ATP 900 B1 1 
HETATM 24 N N7 ATP . . . Q 9 154.775 293.298 338.619 1 73.1 ? N7 ATP 900 B1 1 
HETATM 25 C C5 ATP . . . Q 9 154.311 293.916 337.522 1 73.1 ? C5 ATP 900 B1 1 
HETATM 26 C C6 ATP . . . Q 9 153.428 293.523 336.554 1 73.1 ? C6 ATP 900 B1 1 
HETATM 27 N N6 ATP . . . Q 9 152.682 292.293 336.378 1 73.1 ? N6 ATP 900 B1 1 
HETATM 28 N N1 ATP . . . Q 9 153.131 294.334 335.554 1 73.1 ? N1 ATP 900 B1 1 
HETATM 29 C C2 ATP . . . Q 9 153.7 295.556 335.489 1 73.1 ? C2 ATP 900 B1 1 
HETATM 30 N N3 ATP . . . Q 9 154.569 295.95 336.437 1 73.1 ? N3 ATP 900 B1 1 
HETATM 31 C C4 ATP . . . Q 9 154.866 295.125 337.453 1 73.1 ? C4 ATP 900 B1 1 
HETATM 32 H "H5'1" ATP . . . Q 9 158.927 294.912 342.153 1 73.1 ? "H5'1" ATP 900 B1 1 
HETATM 33 H "H5'2" ATP . . . Q 9 158.3 296.029 343.065 1 73.1 ? "H5'2" ATP 900 B1 1 
HETATM 34 H H4' ATP . . . Q 9 158.906 296.955 340.891 1 73.1 ? H4' ATP 900 B1 1 
HETATM 35 H H3' ATP . . . Q 9 156.682 297.151 342.005 1 73.1 ? H3' ATP 900 B1 1 
HETATM 36 H HO3' ATP . . . Q 9 157.826 298.778 340.207 1 73.1 ? HO3' ATP 900 B1 1 
HETATM 37 H H2' ATP . . . Q 9 155.238 296.507 340.297 1 73.1 ? H2' ATP 900 B1 1 
HETATM 38 H HO2' ATP . . . Q 9 156.268 298.641 339.022 1 73.1 ? HO2' ATP 900 B1 1 
HETATM 39 H H1' ATP . . . Q 9 156.9 296.865 338.341 1 73.1 ? H1' ATP 900 B1 1 
HETATM 40 H H8 ATP . . . Q 9 156.095 293.966 340.009 1 73.1 ? H8 ATP 900 B1 1 
HETATM 41 H HN61 ATP . . . Q 9 152.72 291.681 336.98 1 73.1 ? HN61 ATP 900 B1 1 
HETATM 42 H HN62 ATP . . . Q 9 152.201 292.18 335.676 1 73.1 ? HN62 ATP 900 B1 1 
HETATM 43 H H2 ATP . . . Q 9 153.491 296.126 334.788 1 73.1 ? H2 ATP 900 B1 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#