data_6YOC # _model_server_result.job_id ivYcUTeqbbadI17Fodla-w _model_server_result.datetime_utc '2024-11-28 11:07:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yoc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":210}' # _entry.id 6YOC # _exptl.entry_id 6YOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YOC _cell.length_a 79.17 _cell.length_b 79.17 _cell.length_c 38.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc5 I NA NA . A NA 208 1_555 L O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc6 I NA NA . A NA 208 1_555 L O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 244 n n C48 H481 PE5 sing 245 n n C48 H482 PE5 sing 246 n n C48 H483 PE5 sing 247 n n C50 O1 PE5 sing 248 n n C50 H501 PE5 sing 249 n n C50 H502 PE5 sing 250 n n O1 C1 PE5 sing 251 n n C1 C2 PE5 sing 252 n n C1 H11 PE5 sing 253 n n C1 H12 PE5 sing 254 n n C2 O2 PE5 sing 255 n n C2 H21 PE5 sing 256 n n C2 H22 PE5 sing 257 n n O2 C3 PE5 sing 258 n n C3 C4 PE5 sing 259 n n C3 H31 PE5 sing 260 n n C3 H32 PE5 sing 261 n n C4 O3 PE5 sing 262 n n C4 H41 PE5 sing 263 n n C4 H42 PE5 sing 264 n n O3 C5 PE5 sing 265 n n C5 C6 PE5 sing 266 n n C5 H51 PE5 sing 267 n n C5 H52A PE5 sing 268 n n C6 O4 PE5 sing 269 n n C6 H61 PE5 sing 270 n n C6 H62 PE5 sing 271 n n O4 C7 PE5 sing 272 n n C7 C8 PE5 sing 273 n n C7 H71 PE5 sing 274 n n C7 H72 PE5 sing 275 n n C8 O5 PE5 sing 276 n n C8 H81 PE5 sing 277 n n C8 H82 PE5 sing 278 n n O5 C9 PE5 sing 279 n n C9 C10 PE5 sing 280 n n C9 H91 PE5 sing 281 n n C9 H92 PE5 sing 282 n n C10 O6 PE5 sing 283 n n C10 H101 PE5 sing 284 n n C10 H102 PE5 sing 285 n n O6 C11 PE5 sing 286 n n C11 C12 PE5 sing 287 n n C11 H111 PE5 sing 288 n n C11 H112 PE5 sing 289 n n C12 O7 PE5 sing 290 n n C12 H121 PE5 sing 291 n n C12 H122 PE5 sing 292 n n O7 C13 PE5 sing 293 n n C13 C14 PE5 sing 294 n n C13 H131 PE5 sing 295 n n C13 H132 PE5 sing 296 n n C14 O8 PE5 sing 297 n n C14 H141 PE5 sing 298 n n C14 H142 PE5 sing 299 n n O8 C15 PE5 sing 300 n n C15 C16 PE5 sing 301 n n C15 H151 PE5 sing 302 n n C15 H152 PE5 sing 303 n n C16 O52 PE5 sing 304 n n C16 H161 PE5 sing 305 n n C16 H162 PE5 sing 306 n n O52 H52 PE5 sing 307 n n # _atom_sites.entry_id 6YOC _atom_sites.fract_transf_matrix[1][1] 0.012631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR A 1 201 201 BR BR . C 2 BR A 1 202 202 BR BR . D 2 BR A 1 203 203 BR BR . E 2 BR A 1 204 205 BR BR . F 2 BR A 1 205 206 BR BR . G 2 BR A 1 206 207 BR BR . H 2 BR A 1 207 208 BR BR . I 3 NA A 1 208 209 NA NA . J 4 ACY A 1 209 210 ACY ACY . K 5 PE5 A 1 210 211 PE5 PE5 . L 6 HOH A 1 301 30 HOH HOH . L 6 HOH A 2 302 34 HOH HOH . L 6 HOH A 3 303 12 HOH HOH . L 6 HOH A 4 304 11 HOH HOH . L 6 HOH A 5 305 45 HOH HOH . L 6 HOH A 6 306 46 HOH HOH . L 6 HOH A 7 307 7 HOH HOH . L 6 HOH A 8 308 2 HOH HOH . L 6 HOH A 9 309 43 HOH HOH . L 6 HOH A 10 310 6 HOH HOH . L 6 HOH A 11 311 50 HOH HOH . L 6 HOH A 12 312 31 HOH HOH . L 6 HOH A 13 313 21 HOH HOH . L 6 HOH A 14 314 4 HOH HOH . L 6 HOH A 15 315 10 HOH HOH . L 6 HOH A 16 316 26 HOH HOH . L 6 HOH A 17 317 39 HOH HOH . L 6 HOH A 18 318 19 HOH HOH . L 6 HOH A 19 319 27 HOH HOH . L 6 HOH A 20 320 29 HOH HOH . L 6 HOH A 21 321 13 HOH HOH . L 6 HOH A 22 322 17 HOH HOH . L 6 HOH A 23 323 56 HOH HOH . L 6 HOH A 24 324 1 HOH HOH . L 6 HOH A 25 325 9 HOH HOH . L 6 HOH A 26 326 32 HOH HOH . L 6 HOH A 27 327 53 HOH HOH . L 6 HOH A 28 328 16 HOH HOH . L 6 HOH A 29 329 28 HOH HOH . L 6 HOH A 30 330 22 HOH HOH . L 6 HOH A 31 331 20 HOH HOH . L 6 HOH A 32 332 3 HOH HOH . L 6 HOH A 33 333 18 HOH HOH . L 6 HOH A 34 334 15 HOH HOH . L 6 HOH A 35 335 14 HOH HOH . L 6 HOH A 36 336 25 HOH HOH . L 6 HOH A 37 337 24 HOH HOH . L 6 HOH A 38 338 5 HOH HOH . L 6 HOH A 39 339 8 HOH HOH . L 6 HOH A 40 340 37 HOH HOH . L 6 HOH A 41 341 49 HOH HOH . L 6 HOH A 42 342 54 HOH HOH . L 6 HOH A 43 343 23 HOH HOH . L 6 HOH A 44 344 47 HOH HOH . L 6 HOH A 45 345 55 HOH HOH . L 6 HOH A 46 346 51 HOH HOH . L 6 HOH A 47 347 42 HOH HOH . L 6 HOH A 48 348 35 HOH HOH . L 6 HOH A 49 349 40 HOH HOH . L 6 HOH A 50 350 41 HOH HOH . L 6 HOH A 51 351 48 HOH HOH . L 6 HOH A 52 352 44 HOH HOH . L 6 HOH A 53 353 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 PE5 . . . K 5 160.219 131.12 19.408 1 54.38 ? C5 PE5 210 A 1 HETATM 2 C C6 PE5 . . . K 5 161.42 130.734 20.27 1 57.36 ? C6 PE5 210 A 1 HETATM 3 O O4 PE5 . . . K 5 161.029 130.729 21.614 1 58.28 ? O4 PE5 210 A 1 HETATM 4 C C7 PE5 . . . K 5 162.076 130.571 22.531 1 41.48 ? C7 PE5 210 A 1 HETATM 5 C C8 PE5 . . . K 5 162.204 129.093 22.886 1 37.9 ? C8 PE5 210 A 1 HETATM 6 O O5 PE5 . . . K 5 161.301 128.775 23.905 1 41.52 ? O5 PE5 210 A 1 HETATM 7 C C9 PE5 . . . K 5 161.025 127.408 24.036 1 34.36 ? C9 PE5 210 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 170 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #