data_6YOD # _model_server_result.job_id Z91arPYhAL8P3Xaajjavag _model_server_result.datetime_utc '2024-11-08 08:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":210}' # _entry.id 6YOD # _exptl.entry_id 6YOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.147 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-METHOXYETHOXY)ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YOD _cell.length_a 78.99 _cell.length_b 78.99 _cell.length_c 38.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc5 I NA NA . A NA 208 1_555 M O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc6 I NA NA . A NA 208 1_555 M O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? # _chem_comp.formula 'C5 H12 O3' _chem_comp.formula_weight 120.147 _chem_comp.id PG0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-METHOXYETHOXY)ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PEG 6000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O2 PG0 sing 266 n n C5 H51 PG0 sing 267 n n C5 H52 PG0 sing 268 n n C5 H53 PG0 sing 269 n n O2 C4 PG0 sing 270 n n C4 C3 PG0 sing 271 n n C4 H41 PG0 sing 272 n n C4 H42 PG0 sing 273 n n C3 O1 PG0 sing 274 n n C3 H31 PG0 sing 275 n n C3 H32 PG0 sing 276 n n O1 C2 PG0 sing 277 n n C2 C1 PG0 sing 278 n n C2 H21 PG0 sing 279 n n C2 H22 PG0 sing 280 n n C1 OTT PG0 sing 281 n n C1 H11 PG0 sing 282 n n C1 H12 PG0 sing 283 n n OTT HTT PG0 sing 284 n n # _atom_sites.entry_id 6YOD _atom_sites.fract_transf_matrix[1][1] 0.01266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR A 1 201 201 BR BR . C 2 BR A 1 202 202 BR BR . D 2 BR A 1 203 203 BR BR . E 2 BR A 1 204 205 BR BR . F 2 BR A 1 205 206 BR BR . G 2 BR A 1 206 207 BR BR . H 2 BR A 1 207 208 BR BR . I 3 NA A 1 208 209 NA NA . J 4 ACY A 1 209 210 ACY ACY . K 5 PG0 A 1 210 1 PG0 PE5 . L 6 AE3 A 1 211 2 AE3 PE5 . M 7 HOH A 1 301 34 HOH HOH . M 7 HOH A 2 302 96 HOH HOH . M 7 HOH A 3 303 75 HOH HOH . M 7 HOH A 4 304 98 HOH HOH . M 7 HOH A 5 305 69 HOH HOH . M 7 HOH A 6 306 53 HOH HOH . M 7 HOH A 7 307 82 HOH HOH . M 7 HOH A 8 308 18 HOH HOH . M 7 HOH A 9 309 26 HOH HOH . M 7 HOH A 10 310 14 HOH HOH . M 7 HOH A 11 311 40 HOH HOH . M 7 HOH A 12 312 12 HOH HOH . M 7 HOH A 13 313 19 HOH HOH . M 7 HOH A 14 314 62 HOH HOH . M 7 HOH A 15 315 46 HOH HOH . M 7 HOH A 16 316 30 HOH HOH . M 7 HOH A 17 317 28 HOH HOH . M 7 HOH A 18 318 2 HOH HOH . M 7 HOH A 19 319 21 HOH HOH . M 7 HOH A 20 320 15 HOH HOH . M 7 HOH A 21 321 58 HOH HOH . M 7 HOH A 22 322 88 HOH HOH . M 7 HOH A 23 323 41 HOH HOH . M 7 HOH A 24 324 4 HOH HOH . M 7 HOH A 25 325 56 HOH HOH . M 7 HOH A 26 326 49 HOH HOH . M 7 HOH A 27 327 22 HOH HOH . M 7 HOH A 28 328 9 HOH HOH . M 7 HOH A 29 329 65 HOH HOH . M 7 HOH A 30 330 29 HOH HOH . M 7 HOH A 31 331 16 HOH HOH . M 7 HOH A 32 332 1 HOH HOH . M 7 HOH A 33 333 36 HOH HOH . M 7 HOH A 34 334 99 HOH HOH . M 7 HOH A 35 335 10 HOH HOH . M 7 HOH A 36 336 23 HOH HOH . M 7 HOH A 37 337 70 HOH HOH . M 7 HOH A 38 338 11 HOH HOH . M 7 HOH A 39 339 35 HOH HOH . M 7 HOH A 40 340 20 HOH HOH . M 7 HOH A 41 341 77 HOH HOH . M 7 HOH A 42 342 59 HOH HOH . M 7 HOH A 43 343 61 HOH HOH . M 7 HOH A 44 344 17 HOH HOH . M 7 HOH A 45 345 51 HOH HOH . M 7 HOH A 46 346 50 HOH HOH . M 7 HOH A 47 347 66 HOH HOH . M 7 HOH A 48 348 72 HOH HOH . M 7 HOH A 49 349 6 HOH HOH . M 7 HOH A 50 350 79 HOH HOH . M 7 HOH A 51 351 47 HOH HOH . M 7 HOH A 52 352 39 HOH HOH . M 7 HOH A 53 353 55 HOH HOH . M 7 HOH A 54 354 85 HOH HOH . M 7 HOH A 55 355 64 HOH HOH . M 7 HOH A 56 356 71 HOH HOH . M 7 HOH A 57 357 13 HOH HOH . M 7 HOH A 58 358 24 HOH HOH . M 7 HOH A 59 359 95 HOH HOH . M 7 HOH A 60 360 48 HOH HOH . M 7 HOH A 61 361 83 HOH HOH . M 7 HOH A 62 362 33 HOH HOH . M 7 HOH A 63 363 42 HOH HOH . M 7 HOH A 64 364 67 HOH HOH . M 7 HOH A 65 365 8 HOH HOH . M 7 HOH A 66 366 7 HOH HOH . M 7 HOH A 67 367 5 HOH HOH . M 7 HOH A 68 368 81 HOH HOH . M 7 HOH A 69 369 78 HOH HOH . M 7 HOH A 70 370 38 HOH HOH . M 7 HOH A 71 371 94 HOH HOH . M 7 HOH A 72 372 86 HOH HOH . M 7 HOH A 73 373 3 HOH HOH . M 7 HOH A 74 374 44 HOH HOH . M 7 HOH A 75 375 27 HOH HOH . M 7 HOH A 76 376 97 HOH HOH . M 7 HOH A 77 377 52 HOH HOH . M 7 HOH A 78 378 100 HOH HOH . M 7 HOH A 79 379 32 HOH HOH . M 7 HOH A 80 380 25 HOH HOH . M 7 HOH A 81 381 93 HOH HOH . M 7 HOH A 82 382 37 HOH HOH . M 7 HOH A 83 383 73 HOH HOH . M 7 HOH A 84 384 54 HOH HOH . M 7 HOH A 85 385 43 HOH HOH . M 7 HOH A 86 386 68 HOH HOH . M 7 HOH A 87 387 102 HOH HOH . M 7 HOH A 88 388 63 HOH HOH . M 7 HOH A 89 389 80 HOH HOH . M 7 HOH A 90 390 60 HOH HOH . M 7 HOH A 91 391 57 HOH HOH . M 7 HOH A 92 392 89 HOH HOH . M 7 HOH A 93 393 87 HOH HOH . M 7 HOH A 94 394 45 HOH HOH . M 7 HOH A 95 395 76 HOH HOH . M 7 HOH A 96 396 74 HOH HOH . M 7 HOH A 97 397 90 HOH HOH . M 7 HOH A 98 398 101 HOH HOH . M 7 HOH A 99 399 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 PG0 . . . K 5 157.996 148.662 22.362 1 56.16 ? C5 PG0 210 A 1 HETATM 2 O O2 PG0 . . . K 5 158.121 147.413 21.732 1 65.68 ? O2 PG0 210 A 1 HETATM 3 C C4 PG0 . . . K 5 156.912 146.791 21.371 1 48.71 ? C4 PG0 210 A 1 HETATM 4 C C3 PG0 . . . K 5 156.969 145.278 21.644 1 52.69 ? C3 PG0 210 A 1 HETATM 5 O O1 PG0 . . . K 5 158.109 144.678 21.066 1 62.8 ? O1 PG0 210 A 1 HETATM 6 C C2 PG0 . . . K 5 158.189 143.3 21.32 1 47.16 ? C2 PG0 210 A 1 HETATM 7 C C1 PG0 . . . K 5 159.424 142.622 20.718 1 45.8 ? C1 PG0 210 A 1 HETATM 8 O OTT PG0 . . . K 5 160.613 143.248 21.141 1 52.08 ? OTT PG0 210 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #