data_6YOD
#
_model_server_result.job_id            gcFGJSQgzOFinzdyTZzJLw 
_model_server_result.datetime_utc      '2024-11-27 00:40:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    6YOD 
#
_exptl.entry_id    6YOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.147 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(2-METHOXYETHOXY)ETHANOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YOD 
_cell.length_a            78.99 
_cell.length_b            78.99 
_cell.length_c            38.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc5 I NA NA . A NA 208 1_555 M O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc6 I NA NA . A NA 208 1_555 M O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
#
_chem_comp.formula           'C5 H12 O3' 
_chem_comp.formula_weight    120.147 
_chem_comp.id                PG0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(2-METHOXYETHOXY)ETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PEG 6000' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O2 PG0 sing 266 n n 
C5 H51 PG0 sing 267 n n 
C5 H52 PG0 sing 268 n n 
C5 H53 PG0 sing 269 n n 
O2 C4 PG0 sing 270 n n 
C4 C3 PG0 sing 271 n n 
C4 H41 PG0 sing 272 n n 
C4 H42 PG0 sing 273 n n 
C3 O1 PG0 sing 274 n n 
C3 H31 PG0 sing 275 n n 
C3 H32 PG0 sing 276 n n 
O1 C2 PG0 sing 277 n n 
C2 C1 PG0 sing 278 n n 
C2 H21 PG0 sing 279 n n 
C2 H22 PG0 sing 280 n n 
C1 OTT PG0 sing 281 n n 
C1 H11 PG0 sing 282 n n 
C1 H12 PG0 sing 283 n n 
OTT HTT PG0 sing 284 n n 
#
_atom_sites.entry_id                     6YOD 
_atom_sites.fract_transf_matrix[1][1]    0.01266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BR A 1 201 201 BR BR . 
C 2 BR A 1 202 202 BR BR . 
D 2 BR A 1 203 203 BR BR . 
E 2 BR A 1 204 205 BR BR . 
F 2 BR A 1 205 206 BR BR . 
G 2 BR A 1 206 207 BR BR . 
H 2 BR A 1 207 208 BR BR . 
I 3 NA A 1 208 209 NA NA . 
J 4 ACY A 1 209 210 ACY ACY . 
K 5 PG0 A 1 210 1 PG0 PE5 . 
L 6 AE3 A 1 211 2 AE3 PE5 . 
M 7 HOH A 1 301 34 HOH HOH . 
M 7 HOH A 2 302 96 HOH HOH . 
M 7 HOH A 3 303 75 HOH HOH . 
M 7 HOH A 4 304 98 HOH HOH . 
M 7 HOH A 5 305 69 HOH HOH . 
M 7 HOH A 6 306 53 HOH HOH . 
M 7 HOH A 7 307 82 HOH HOH . 
M 7 HOH A 8 308 18 HOH HOH . 
M 7 HOH A 9 309 26 HOH HOH . 
M 7 HOH A 10 310 14 HOH HOH . 
M 7 HOH A 11 311 40 HOH HOH . 
M 7 HOH A 12 312 12 HOH HOH . 
M 7 HOH A 13 313 19 HOH HOH . 
M 7 HOH A 14 314 62 HOH HOH . 
M 7 HOH A 15 315 46 HOH HOH . 
M 7 HOH A 16 316 30 HOH HOH . 
M 7 HOH A 17 317 28 HOH HOH . 
M 7 HOH A 18 318 2 HOH HOH . 
M 7 HOH A 19 319 21 HOH HOH . 
M 7 HOH A 20 320 15 HOH HOH . 
M 7 HOH A 21 321 58 HOH HOH . 
M 7 HOH A 22 322 88 HOH HOH . 
M 7 HOH A 23 323 41 HOH HOH . 
M 7 HOH A 24 324 4 HOH HOH . 
M 7 HOH A 25 325 56 HOH HOH . 
M 7 HOH A 26 326 49 HOH HOH . 
M 7 HOH A 27 327 22 HOH HOH . 
M 7 HOH A 28 328 9 HOH HOH . 
M 7 HOH A 29 329 65 HOH HOH . 
M 7 HOH A 30 330 29 HOH HOH . 
M 7 HOH A 31 331 16 HOH HOH . 
M 7 HOH A 32 332 1 HOH HOH . 
M 7 HOH A 33 333 36 HOH HOH . 
M 7 HOH A 34 334 99 HOH HOH . 
M 7 HOH A 35 335 10 HOH HOH . 
M 7 HOH A 36 336 23 HOH HOH . 
M 7 HOH A 37 337 70 HOH HOH . 
M 7 HOH A 38 338 11 HOH HOH . 
M 7 HOH A 39 339 35 HOH HOH . 
M 7 HOH A 40 340 20 HOH HOH . 
M 7 HOH A 41 341 77 HOH HOH . 
M 7 HOH A 42 342 59 HOH HOH . 
M 7 HOH A 43 343 61 HOH HOH . 
M 7 HOH A 44 344 17 HOH HOH . 
M 7 HOH A 45 345 51 HOH HOH . 
M 7 HOH A 46 346 50 HOH HOH . 
M 7 HOH A 47 347 66 HOH HOH . 
M 7 HOH A 48 348 72 HOH HOH . 
M 7 HOH A 49 349 6 HOH HOH . 
M 7 HOH A 50 350 79 HOH HOH . 
M 7 HOH A 51 351 47 HOH HOH . 
M 7 HOH A 52 352 39 HOH HOH . 
M 7 HOH A 53 353 55 HOH HOH . 
M 7 HOH A 54 354 85 HOH HOH . 
M 7 HOH A 55 355 64 HOH HOH . 
M 7 HOH A 56 356 71 HOH HOH . 
M 7 HOH A 57 357 13 HOH HOH . 
M 7 HOH A 58 358 24 HOH HOH . 
M 7 HOH A 59 359 95 HOH HOH . 
M 7 HOH A 60 360 48 HOH HOH . 
M 7 HOH A 61 361 83 HOH HOH . 
M 7 HOH A 62 362 33 HOH HOH . 
M 7 HOH A 63 363 42 HOH HOH . 
M 7 HOH A 64 364 67 HOH HOH . 
M 7 HOH A 65 365 8 HOH HOH . 
M 7 HOH A 66 366 7 HOH HOH . 
M 7 HOH A 67 367 5 HOH HOH . 
M 7 HOH A 68 368 81 HOH HOH . 
M 7 HOH A 69 369 78 HOH HOH . 
M 7 HOH A 70 370 38 HOH HOH . 
M 7 HOH A 71 371 94 HOH HOH . 
M 7 HOH A 72 372 86 HOH HOH . 
M 7 HOH A 73 373 3 HOH HOH . 
M 7 HOH A 74 374 44 HOH HOH . 
M 7 HOH A 75 375 27 HOH HOH . 
M 7 HOH A 76 376 97 HOH HOH . 
M 7 HOH A 77 377 52 HOH HOH . 
M 7 HOH A 78 378 100 HOH HOH . 
M 7 HOH A 79 379 32 HOH HOH . 
M 7 HOH A 80 380 25 HOH HOH . 
M 7 HOH A 81 381 93 HOH HOH . 
M 7 HOH A 82 382 37 HOH HOH . 
M 7 HOH A 83 383 73 HOH HOH . 
M 7 HOH A 84 384 54 HOH HOH . 
M 7 HOH A 85 385 43 HOH HOH . 
M 7 HOH A 86 386 68 HOH HOH . 
M 7 HOH A 87 387 102 HOH HOH . 
M 7 HOH A 88 388 63 HOH HOH . 
M 7 HOH A 89 389 80 HOH HOH . 
M 7 HOH A 90 390 60 HOH HOH . 
M 7 HOH A 91 391 57 HOH HOH . 
M 7 HOH A 92 392 89 HOH HOH . 
M 7 HOH A 93 393 87 HOH HOH . 
M 7 HOH A 94 394 45 HOH HOH . 
M 7 HOH A 95 395 76 HOH HOH . 
M 7 HOH A 96 396 74 HOH HOH . 
M 7 HOH A 97 397 90 HOH HOH . 
M 7 HOH A 98 398 101 HOH HOH . 
M 7 HOH A 99 399 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 PG0 . . . K 5 157.996 148.662 22.362 1 56.16 ? C5 PG0 210 A 1 
HETATM 2 O O2 PG0 . . . K 5 158.121 147.413 21.732 1 65.68 ? O2 PG0 210 A 1 
HETATM 3 C C4 PG0 . . . K 5 156.912 146.791 21.371 1 48.71 ? C4 PG0 210 A 1 
HETATM 4 C C3 PG0 . . . K 5 156.969 145.278 21.644 1 52.69 ? C3 PG0 210 A 1 
HETATM 5 O O1 PG0 . . . K 5 158.109 144.678 21.066 1 62.8 ? O1 PG0 210 A 1 
HETATM 6 C C2 PG0 . . . K 5 158.189 143.3 21.32 1 47.16 ? C2 PG0 210 A 1 
HETATM 7 C C1 PG0 . . . K 5 159.424 142.622 20.718 1 45.8 ? C1 PG0 210 A 1 
HETATM 8 O OTT PG0 . . . K 5 160.613 143.248 21.141 1 52.08 ? OTT PG0 210 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#