data_6YOF # _model_server_result.job_id tHENGaMMcq9CMfYdu4GnNA _model_server_result.datetime_utc '2024-11-28 12:13:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 6YOF # _exptl.entry_id 6YOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YOF _cell.length_a 102.45 _cell.length_b 110.7 _cell.length_c 111.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id L _struct_conn.ptnr1_label_atom_id C20 _struct_conn.ptnr1_label_comp_id 78M _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id 78M _struct_conn.ptnr1_auth_seq_id 511 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_atom_id O19 _struct_conn.ptnr2_label_comp_id 78M _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 78M _struct_conn.ptnr2_auth_seq_id 514 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.374 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 6YOF _atom_sites.fract_transf_matrix[1][1] 0.009761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 503 PO4 PO4 . C 3 78M A 1 502 504 78M 78M . D 3 78M A 1 503 505 78M 78M . E 3 78M A 1 504 506 78M 78M . F 3 78M A 1 505 507 78M 78M . G 3 78M A 1 506 508 78M 78M . H 3 78M A 1 507 509 78M 78M . I 3 78M A 1 508 510 78M 78M . J 3 78M A 1 509 511 78M 78M . K 3 78M A 1 510 512 78M 78M . L 3 78M A 1 511 513 78M 78M . M 3 78M A 1 512 514 78M 78M . N 3 78M A 1 513 515 78M 78M . O 3 78M A 1 514 516 78M 78M . P 3 78M A 1 515 517 78M 78M . Q 3 78M A 1 516 518 78M 78M . R 3 78M A 1 517 519 78M 78M . S 3 78M A 1 518 520 78M 78M . T 3 78M A 1 519 521 78M 78M . U 3 78M A 1 520 523 78M 78M . V 3 78M A 1 521 524 78M 78M . W 4 PG0 A 1 522 525 PG0 PE5 . X 5 PGE A 1 523 526 PGE PE5 . Y 6 HOH A 1 601 4 HOH HOH . Y 6 HOH A 2 602 70 HOH HOH . Y 6 HOH A 3 603 77 HOH HOH . Y 6 HOH A 4 604 39 HOH HOH . Y 6 HOH A 5 605 14 HOH HOH . Y 6 HOH A 6 606 11 HOH HOH . Y 6 HOH A 7 607 9 HOH HOH . Y 6 HOH A 8 608 30 HOH HOH . Y 6 HOH A 9 609 6 HOH HOH . Y 6 HOH A 10 610 51 HOH HOH . Y 6 HOH A 11 611 20 HOH HOH . Y 6 HOH A 12 612 67 HOH HOH . Y 6 HOH A 13 613 17 HOH HOH . Y 6 HOH A 14 614 35 HOH HOH . Y 6 HOH A 15 615 61 HOH HOH . Y 6 HOH A 16 616 45 HOH HOH . Y 6 HOH A 17 617 32 HOH HOH . Y 6 HOH A 18 618 66 HOH HOH . Y 6 HOH A 19 619 40 HOH HOH . Y 6 HOH A 20 620 3 HOH HOH . Y 6 HOH A 21 621 53 HOH HOH . Y 6 HOH A 22 622 10 HOH HOH . Y 6 HOH A 23 623 41 HOH HOH . Y 6 HOH A 24 624 23 HOH HOH . Y 6 HOH A 25 625 36 HOH HOH . Y 6 HOH A 26 626 47 HOH HOH . Y 6 HOH A 27 627 5 HOH HOH . Y 6 HOH A 28 628 15 HOH HOH . Y 6 HOH A 29 629 29 HOH HOH . Y 6 HOH A 30 630 8 HOH HOH . Y 6 HOH A 31 631 68 HOH HOH . Y 6 HOH A 32 632 24 HOH HOH . Y 6 HOH A 33 633 59 HOH HOH . Y 6 HOH A 34 634 43 HOH HOH . Y 6 HOH A 35 635 46 HOH HOH . Y 6 HOH A 36 636 16 HOH HOH . Y 6 HOH A 37 637 56 HOH HOH . Y 6 HOH A 38 638 42 HOH HOH . Y 6 HOH A 39 639 62 HOH HOH . Y 6 HOH A 40 640 75 HOH HOH . Y 6 HOH A 41 641 48 HOH HOH . Y 6 HOH A 42 642 7 HOH HOH . Y 6 HOH A 43 643 83 HOH HOH . Y 6 HOH A 44 644 18 HOH HOH . Y 6 HOH A 45 645 37 HOH HOH . Y 6 HOH A 46 646 57 HOH HOH . Y 6 HOH A 47 647 2 HOH HOH . Y 6 HOH A 48 648 13 HOH HOH . Y 6 HOH A 49 649 26 HOH HOH . Y 6 HOH A 50 650 38 HOH HOH . Y 6 HOH A 51 651 50 HOH HOH . Y 6 HOH A 52 652 64 HOH HOH . Y 6 HOH A 53 653 22 HOH HOH . Y 6 HOH A 54 654 55 HOH HOH . Y 6 HOH A 55 655 31 HOH HOH . Y 6 HOH A 56 656 19 HOH HOH . Y 6 HOH A 57 657 54 HOH HOH . Y 6 HOH A 58 658 27 HOH HOH . Y 6 HOH A 59 659 79 HOH HOH . Y 6 HOH A 60 660 34 HOH HOH . Y 6 HOH A 61 661 63 HOH HOH . Y 6 HOH A 62 662 33 HOH HOH . Y 6 HOH A 63 663 21 HOH HOH . Y 6 HOH A 64 664 82 HOH HOH . Y 6 HOH A 65 665 80 HOH HOH . Y 6 HOH A 66 666 81 HOH HOH . Y 6 HOH A 67 667 72 HOH HOH . Y 6 HOH A 68 668 74 HOH HOH . Y 6 HOH A 69 669 69 HOH HOH . Y 6 HOH A 70 670 78 HOH HOH . Y 6 HOH A 71 671 71 HOH HOH . Y 6 HOH A 72 672 76 HOH HOH . Y 6 HOH A 73 673 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . J 3 0.662 36.472 -11.519 0.89 102.46 ? O21 78M 509 A 1 HETATM 2 C C20 78M . . . J 3 -0.619 36.892 -11.144 0.89 95.08 ? C20 78M 509 A 1 HETATM 3 C C18 78M . . . J 3 -0.904 36.392 -9.732 0.89 85.94 ? C18 78M 509 A 1 HETATM 4 O O19 78M . . . J 3 -1.266 35.039 -9.776 0.89 95.16 ? O19 78M 509 A 1 HETATM 5 C C17 78M . . . J 3 -2.036 37.219 -9.128 0.89 79.78 ? C17 78M 509 A 1 HETATM 6 O O2 78M . . . J 3 -1.766 37.423 -7.772 0.89 90.54 ? O2 78M 509 A 1 HETATM 7 C C1 78M . . . J 3 -2.417 36.52 -6.925 0.89 86.52 ? C1 78M 509 A 1 HETATM 8 O O1 78M . . . J 3 -3.287 35.831 -7.341 0.89 85.87 ? O1 78M 509 A 1 HETATM 9 C C2 78M . . . J 3 -2.006 36.413 -5.461 0.89 88.73 ? C2 78M 509 A 1 HETATM 10 C C3 78M . . . J 3 -3.1 37.008 -4.578 0.89 82.62 ? C3 78M 509 A 1 HETATM 11 C C4 78M . . . J 3 -2.921 36.474 -3.16 0.89 88.72 ? C4 78M 509 A 1 HETATM 12 C C5 78M . . . J 3 -3.065 34.954 -3.176 0.89 90.29 ? C5 78M 509 A 1 HETATM 13 C C6 78M . . . J 3 -2.755 34.384 -1.794 0.89 87.69 ? C6 78M 509 A 1 HETATM 14 C C7 78M . . . J 3 -3.528 35.164 -0.733 0.89 90.93 ? C7 78M 509 A 1 HETATM 15 C C8 78M . . . J 3 -3.801 34.605 0.429 0.89 95.09 ? C8 78M 509 A 1 HETATM 16 C C9 78M . . . J 3 -3.35 33.173 0.713 0.89 101.16 ? C9 78M 509 A 1 HETATM 17 C C10 78M . . . J 3 -2.508 33.134 1.986 0.89 108.41 ? C10 78M 509 A 1 HETATM 18 C C11 78M . . . J 3 -3.308 33.712 3.15 0.89 90.3 ? C11 78M 509 A 1 HETATM 19 C C12 78M . . . J 3 -3.473 32.648 4.232 0.89 103.97 ? C12 78M 509 A 1 HETATM 20 C C13 78M . . . J 3 -2.978 33.201 5.566 0.89 108.19 ? C13 78M 509 A 1 HETATM 21 C C15 78M . . . J 3 -3.342 34.962 7.296 0.89 90.24 ? C15 78M 509 A 1 HETATM 22 C C14 78M . . . J 3 -3.804 34.43 5.941 0.89 87.25 ? C14 78M 509 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #