data_6YOF # _model_server_result.job_id 05kBw72jJPbsSPsU2YfDgA _model_server_result.datetime_utc '2024-11-24 19:01:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":523}' # _entry.id 6YOF # _exptl.entry_id 6YOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YOF _cell.length_a 102.45 _cell.length_b 110.7 _cell.length_c 111.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id L _struct_conn.ptnr1_label_atom_id C20 _struct_conn.ptnr1_label_comp_id 78M _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id 78M _struct_conn.ptnr1_auth_seq_id 511 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_atom_id O19 _struct_conn.ptnr2_label_comp_id 78M _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 78M _struct_conn.ptnr2_auth_seq_id 514 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.374 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 298 n n C1 C2 PGE sing 299 n n C1 H1 PGE sing 300 n n C1 H12 PGE sing 301 n n O1 HO1 PGE sing 302 n n C2 O2 PGE sing 303 n n C2 H2 PGE sing 304 n n C2 H22 PGE sing 305 n n O2 C3 PGE sing 306 n n C3 C4 PGE sing 307 n n C3 H3 PGE sing 308 n n C3 H32 PGE sing 309 n n C4 O3 PGE sing 310 n n C4 H4 PGE sing 311 n n C4 H42 PGE sing 312 n n O4 C6 PGE sing 313 n n O4 HO4 PGE sing 314 n n C6 C5 PGE sing 315 n n C6 H6 PGE sing 316 n n C6 H62 PGE sing 317 n n C5 O3 PGE sing 318 n n C5 H5 PGE sing 319 n n C5 H52 PGE sing 320 n n # _atom_sites.entry_id 6YOF _atom_sites.fract_transf_matrix[1][1] 0.009761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 503 PO4 PO4 . C 3 78M A 1 502 504 78M 78M . D 3 78M A 1 503 505 78M 78M . E 3 78M A 1 504 506 78M 78M . F 3 78M A 1 505 507 78M 78M . G 3 78M A 1 506 508 78M 78M . H 3 78M A 1 507 509 78M 78M . I 3 78M A 1 508 510 78M 78M . J 3 78M A 1 509 511 78M 78M . K 3 78M A 1 510 512 78M 78M . L 3 78M A 1 511 513 78M 78M . M 3 78M A 1 512 514 78M 78M . N 3 78M A 1 513 515 78M 78M . O 3 78M A 1 514 516 78M 78M . P 3 78M A 1 515 517 78M 78M . Q 3 78M A 1 516 518 78M 78M . R 3 78M A 1 517 519 78M 78M . S 3 78M A 1 518 520 78M 78M . T 3 78M A 1 519 521 78M 78M . U 3 78M A 1 520 523 78M 78M . V 3 78M A 1 521 524 78M 78M . W 4 PG0 A 1 522 525 PG0 PE5 . X 5 PGE A 1 523 526 PGE PE5 . Y 6 HOH A 1 601 4 HOH HOH . Y 6 HOH A 2 602 70 HOH HOH . Y 6 HOH A 3 603 77 HOH HOH . Y 6 HOH A 4 604 39 HOH HOH . Y 6 HOH A 5 605 14 HOH HOH . Y 6 HOH A 6 606 11 HOH HOH . Y 6 HOH A 7 607 9 HOH HOH . Y 6 HOH A 8 608 30 HOH HOH . Y 6 HOH A 9 609 6 HOH HOH . Y 6 HOH A 10 610 51 HOH HOH . Y 6 HOH A 11 611 20 HOH HOH . Y 6 HOH A 12 612 67 HOH HOH . Y 6 HOH A 13 613 17 HOH HOH . Y 6 HOH A 14 614 35 HOH HOH . Y 6 HOH A 15 615 61 HOH HOH . Y 6 HOH A 16 616 45 HOH HOH . Y 6 HOH A 17 617 32 HOH HOH . Y 6 HOH A 18 618 66 HOH HOH . Y 6 HOH A 19 619 40 HOH HOH . Y 6 HOH A 20 620 3 HOH HOH . Y 6 HOH A 21 621 53 HOH HOH . Y 6 HOH A 22 622 10 HOH HOH . Y 6 HOH A 23 623 41 HOH HOH . Y 6 HOH A 24 624 23 HOH HOH . Y 6 HOH A 25 625 36 HOH HOH . Y 6 HOH A 26 626 47 HOH HOH . Y 6 HOH A 27 627 5 HOH HOH . Y 6 HOH A 28 628 15 HOH HOH . Y 6 HOH A 29 629 29 HOH HOH . Y 6 HOH A 30 630 8 HOH HOH . Y 6 HOH A 31 631 68 HOH HOH . Y 6 HOH A 32 632 24 HOH HOH . Y 6 HOH A 33 633 59 HOH HOH . Y 6 HOH A 34 634 43 HOH HOH . Y 6 HOH A 35 635 46 HOH HOH . Y 6 HOH A 36 636 16 HOH HOH . Y 6 HOH A 37 637 56 HOH HOH . Y 6 HOH A 38 638 42 HOH HOH . Y 6 HOH A 39 639 62 HOH HOH . Y 6 HOH A 40 640 75 HOH HOH . Y 6 HOH A 41 641 48 HOH HOH . Y 6 HOH A 42 642 7 HOH HOH . Y 6 HOH A 43 643 83 HOH HOH . Y 6 HOH A 44 644 18 HOH HOH . Y 6 HOH A 45 645 37 HOH HOH . Y 6 HOH A 46 646 57 HOH HOH . Y 6 HOH A 47 647 2 HOH HOH . Y 6 HOH A 48 648 13 HOH HOH . Y 6 HOH A 49 649 26 HOH HOH . Y 6 HOH A 50 650 38 HOH HOH . Y 6 HOH A 51 651 50 HOH HOH . Y 6 HOH A 52 652 64 HOH HOH . Y 6 HOH A 53 653 22 HOH HOH . Y 6 HOH A 54 654 55 HOH HOH . Y 6 HOH A 55 655 31 HOH HOH . Y 6 HOH A 56 656 19 HOH HOH . Y 6 HOH A 57 657 54 HOH HOH . Y 6 HOH A 58 658 27 HOH HOH . Y 6 HOH A 59 659 79 HOH HOH . Y 6 HOH A 60 660 34 HOH HOH . Y 6 HOH A 61 661 63 HOH HOH . Y 6 HOH A 62 662 33 HOH HOH . Y 6 HOH A 63 663 21 HOH HOH . Y 6 HOH A 64 664 82 HOH HOH . Y 6 HOH A 65 665 80 HOH HOH . Y 6 HOH A 66 666 81 HOH HOH . Y 6 HOH A 67 667 72 HOH HOH . Y 6 HOH A 68 668 74 HOH HOH . Y 6 HOH A 69 669 69 HOH HOH . Y 6 HOH A 70 670 78 HOH HOH . Y 6 HOH A 71 671 71 HOH HOH . Y 6 HOH A 72 672 76 HOH HOH . Y 6 HOH A 73 673 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . X 5 30.67 10.204 20.227 0.97 92.93 ? C1 PGE 523 A 1 HETATM 2 O O1 PGE . . . X 5 30.442 8.995 19.56 0.97 84.82 ? O1 PGE 523 A 1 HETATM 3 C C2 PGE . . . X 5 32.026 10.76 19.799 0.97 82.52 ? C2 PGE 523 A 1 HETATM 4 O O2 PGE . . . X 5 32.076 12.126 20.085 0.97 87.08 ? O2 PGE 523 A 1 HETATM 5 C C3 PGE . . . X 5 31.386 12.907 19.158 0.97 81.7 ? C3 PGE 523 A 1 HETATM 6 C C4 PGE . . . X 5 31.262 14.345 19.654 0.97 86.68 ? C4 PGE 523 A 1 HETATM 7 O O4 PGE . . . X 5 27.454 14.082 18.522 0.97 69.9 ? O4 PGE 523 A 1 HETATM 8 C C6 PGE . . . X 5 28.049 14.003 19.786 0.97 86.04 ? C6 PGE 523 A 1 HETATM 9 C C5 PGE . . . X 5 29.072 15.127 19.947 0.97 78.06 ? C5 PGE 523 A 1 HETATM 10 O O3 PGE . . . X 5 30.141 14.937 19.063 0.97 79.94 ? O3 PGE 523 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #