data_6YPG # _model_server_result.job_id ySQjkafuovhj8fXsOxcU2w _model_server_result.datetime_utc '2024-11-24 16:56:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ypg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6YPG # _exptl.entry_id 6YPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(4-naphthalen-2-yl-1,3-thiazol-2-yl)amino]-2-oxidanyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.05 _cell.angle_gamma 90 _cell.entry_id 6YPG _cell.length_a 57.653 _cell.length_b 45.661 _cell.length_c 63.817 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H14 N2 O3 S' _chem_comp.formula_weight 362.402 _chem_comp.id N5Q _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(4-naphthalen-2-yl-1,3-thiazol-2-yl)amino]-2-oxidanyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 N5Q doub 243 n y C21 C20 N5Q sing 244 n y C22 C23 N5Q sing 245 n y C20 C19 N5Q doub 246 n y O01 C02 N5Q doub 247 n n C23 C24 N5Q doub 248 n y O10 C09 N5Q sing 249 n n C02 O03 N5Q sing 250 n n C02 C04 N5Q sing 251 n n C19 C24 N5Q sing 252 n y C19 C18 N5Q sing 253 n y C24 C25 N5Q sing 254 n y C09 C04 N5Q doub 255 n y C09 C08 N5Q sing 256 n y C04 C05 N5Q sing 257 n y C18 C17 N5Q doub 258 n y C25 C26 N5Q doub 259 n y C08 C07 N5Q doub 260 n y C05 C06 N5Q doub 261 n y C17 C26 N5Q sing 262 n y C17 C14 N5Q sing 263 n n C07 C06 N5Q sing 264 n y C07 N11 N5Q sing 265 n n N13 C14 N5Q sing 266 n y N13 C12 N5Q doub 267 n y C14 C15 N5Q doub 268 n y N11 C12 N5Q sing 269 n n C12 S16 N5Q sing 270 n y C15 S16 N5Q sing 271 n y C15 H151 N5Q sing 272 n n C18 H181 N5Q sing 273 n n C22 H221 N5Q sing 274 n n C23 H231 N5Q sing 275 n n C26 H261 N5Q sing 276 n n C05 H051 N5Q sing 277 n n C06 H061 N5Q sing 278 n n C08 H081 N5Q sing 279 n n C20 H201 N5Q sing 280 n n C21 H211 N5Q sing 281 n n C25 H251 N5Q sing 282 n n N11 H111 N5Q sing 283 n n O03 H1 N5Q sing 284 n n O10 H101 N5Q sing 285 n n # _atom_sites.entry_id 6YPG _atom_sites.fract_transf_matrix[1][1] 0.017345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N5Q A 1 401 1 N5Q 342 . C 3 ACT A 1 402 1 ACT ACT . D 4 HOH A 1 501 122 HOH HOH . D 4 HOH A 2 502 70 HOH HOH . D 4 HOH A 3 503 194 HOH HOH . D 4 HOH A 4 504 118 HOH HOH . D 4 HOH A 5 505 48 HOH HOH . D 4 HOH A 6 506 216 HOH HOH . D 4 HOH A 7 507 69 HOH HOH . D 4 HOH A 8 508 131 HOH HOH . D 4 HOH A 9 509 160 HOH HOH . D 4 HOH A 10 510 165 HOH HOH . D 4 HOH A 11 511 166 HOH HOH . D 4 HOH A 12 512 101 HOH HOH . D 4 HOH A 13 513 206 HOH HOH . D 4 HOH A 14 514 68 HOH HOH . D 4 HOH A 15 515 38 HOH HOH . D 4 HOH A 16 516 83 HOH HOH . D 4 HOH A 17 517 148 HOH HOH . D 4 HOH A 18 518 219 HOH HOH . D 4 HOH A 19 519 64 HOH HOH . D 4 HOH A 20 520 35 HOH HOH . D 4 HOH A 21 521 93 HOH HOH . D 4 HOH A 22 522 184 HOH HOH . D 4 HOH A 23 523 31 HOH HOH . D 4 HOH A 24 524 102 HOH HOH . D 4 HOH A 25 525 73 HOH HOH . D 4 HOH A 26 526 128 HOH HOH . D 4 HOH A 27 527 71 HOH HOH . D 4 HOH A 28 528 11 HOH HOH . D 4 HOH A 29 529 59 HOH HOH . D 4 HOH A 30 530 223 HOH HOH . D 4 HOH A 31 531 45 HOH HOH . D 4 HOH A 32 532 176 HOH HOH . D 4 HOH A 33 533 9 HOH HOH . D 4 HOH A 34 534 20 HOH HOH . D 4 HOH A 35 535 135 HOH HOH . D 4 HOH A 36 536 207 HOH HOH . D 4 HOH A 37 537 56 HOH HOH . D 4 HOH A 38 538 121 HOH HOH . D 4 HOH A 39 539 186 HOH HOH . D 4 HOH A 40 540 5 HOH HOH . D 4 HOH A 41 541 153 HOH HOH . D 4 HOH A 42 542 13 HOH HOH . D 4 HOH A 43 543 167 HOH HOH . D 4 HOH A 44 544 4 HOH HOH . D 4 HOH A 45 545 114 HOH HOH . D 4 HOH A 46 546 67 HOH HOH . D 4 HOH A 47 547 110 HOH HOH . D 4 HOH A 48 548 190 HOH HOH . D 4 HOH A 49 549 76 HOH HOH . D 4 HOH A 50 550 183 HOH HOH . D 4 HOH A 51 551 49 HOH HOH . D 4 HOH A 52 552 124 HOH HOH . D 4 HOH A 53 553 34 HOH HOH . D 4 HOH A 54 554 50 HOH HOH . D 4 HOH A 55 555 208 HOH HOH . D 4 HOH A 56 556 87 HOH HOH . D 4 HOH A 57 557 100 HOH HOH . D 4 HOH A 58 558 204 HOH HOH . D 4 HOH A 59 559 10 HOH HOH . D 4 HOH A 60 560 215 HOH HOH . D 4 HOH A 61 561 47 HOH HOH . D 4 HOH A 62 562 146 HOH HOH . D 4 HOH A 63 563 163 HOH HOH . D 4 HOH A 64 564 105 HOH HOH . D 4 HOH A 65 565 116 HOH HOH . D 4 HOH A 66 566 168 HOH HOH . D 4 HOH A 67 567 53 HOH HOH . D 4 HOH A 68 568 77 HOH HOH . D 4 HOH A 69 569 178 HOH HOH . D 4 HOH A 70 570 107 HOH HOH . D 4 HOH A 71 571 7 HOH HOH . D 4 HOH A 72 572 97 HOH HOH . D 4 HOH A 73 573 42 HOH HOH . D 4 HOH A 74 574 51 HOH HOH . D 4 HOH A 75 575 123 HOH HOH . D 4 HOH A 76 576 162 HOH HOH . D 4 HOH A 77 577 171 HOH HOH . D 4 HOH A 78 578 158 HOH HOH . D 4 HOH A 79 579 181 HOH HOH . D 4 HOH A 80 580 74 HOH HOH . D 4 HOH A 81 581 104 HOH HOH . D 4 HOH A 82 582 132 HOH HOH . D 4 HOH A 83 583 25 HOH HOH . D 4 HOH A 84 584 1 HOH HOH . D 4 HOH A 85 585 90 HOH HOH . D 4 HOH A 86 586 36 HOH HOH . D 4 HOH A 87 587 111 HOH HOH . D 4 HOH A 88 588 44 HOH HOH . D 4 HOH A 89 589 30 HOH HOH . D 4 HOH A 90 590 94 HOH HOH . D 4 HOH A 91 591 156 HOH HOH . D 4 HOH A 92 592 222 HOH HOH . D 4 HOH A 93 593 16 HOH HOH . D 4 HOH A 94 594 57 HOH HOH . D 4 HOH A 95 595 127 HOH HOH . D 4 HOH A 96 596 169 HOH HOH . D 4 HOH A 97 597 89 HOH HOH . D 4 HOH A 98 598 2 HOH HOH . D 4 HOH A 99 599 29 HOH HOH . D 4 HOH A 100 600 227 HOH HOH . D 4 HOH A 101 601 43 HOH HOH . D 4 HOH A 102 602 22 HOH HOH . D 4 HOH A 103 603 8 HOH HOH . D 4 HOH A 104 604 12 HOH HOH . D 4 HOH A 105 605 157 HOH HOH . D 4 HOH A 106 606 63 HOH HOH . D 4 HOH A 107 607 179 HOH HOH . D 4 HOH A 108 608 41 HOH HOH . D 4 HOH A 109 609 65 HOH HOH . D 4 HOH A 110 610 139 HOH HOH . D 4 HOH A 111 611 3 HOH HOH . D 4 HOH A 112 612 108 HOH HOH . D 4 HOH A 113 613 201 HOH HOH . D 4 HOH A 114 614 15 HOH HOH . D 4 HOH A 115 615 221 HOH HOH . D 4 HOH A 116 616 214 HOH HOH . D 4 HOH A 117 617 84 HOH HOH . D 4 HOH A 118 618 113 HOH HOH . D 4 HOH A 119 619 54 HOH HOH . D 4 HOH A 120 620 18 HOH HOH . D 4 HOH A 121 621 143 HOH HOH . D 4 HOH A 122 622 196 HOH HOH . D 4 HOH A 123 623 188 HOH HOH . D 4 HOH A 124 624 134 HOH HOH . D 4 HOH A 125 625 149 HOH HOH . D 4 HOH A 126 626 33 HOH HOH . D 4 HOH A 127 627 119 HOH HOH . D 4 HOH A 128 628 60 HOH HOH . D 4 HOH A 129 629 58 HOH HOH . D 4 HOH A 130 630 78 HOH HOH . D 4 HOH A 131 631 138 HOH HOH . D 4 HOH A 132 632 145 HOH HOH . D 4 HOH A 133 633 117 HOH HOH . D 4 HOH A 134 634 40 HOH HOH . D 4 HOH A 135 635 82 HOH HOH . D 4 HOH A 136 636 39 HOH HOH . D 4 HOH A 137 637 66 HOH HOH . D 4 HOH A 138 638 199 HOH HOH . D 4 HOH A 139 639 151 HOH HOH . D 4 HOH A 140 640 88 HOH HOH . D 4 HOH A 141 641 72 HOH HOH . D 4 HOH A 142 642 79 HOH HOH . D 4 HOH A 143 643 142 HOH HOH . D 4 HOH A 144 644 112 HOH HOH . D 4 HOH A 145 645 37 HOH HOH . D 4 HOH A 146 646 14 HOH HOH . D 4 HOH A 147 647 212 HOH HOH . D 4 HOH A 148 648 32 HOH HOH . D 4 HOH A 149 649 210 HOH HOH . D 4 HOH A 150 650 62 HOH HOH . D 4 HOH A 151 651 85 HOH HOH . D 4 HOH A 152 652 189 HOH HOH . D 4 HOH A 153 653 46 HOH HOH . D 4 HOH A 154 654 192 HOH HOH . D 4 HOH A 155 655 27 HOH HOH . D 4 HOH A 156 656 106 HOH HOH . D 4 HOH A 157 657 141 HOH HOH . D 4 HOH A 158 658 211 HOH HOH . D 4 HOH A 159 659 55 HOH HOH . D 4 HOH A 160 660 198 HOH HOH . D 4 HOH A 161 661 175 HOH HOH . D 4 HOH A 162 662 197 HOH HOH . D 4 HOH A 163 663 103 HOH HOH . D 4 HOH A 164 664 150 HOH HOH . D 4 HOH A 165 665 174 HOH HOH . D 4 HOH A 166 666 95 HOH HOH . D 4 HOH A 167 667 140 HOH HOH . D 4 HOH A 168 668 129 HOH HOH . D 4 HOH A 169 669 81 HOH HOH . D 4 HOH A 170 670 144 HOH HOH . D 4 HOH A 171 671 217 HOH HOH . D 4 HOH A 172 672 154 HOH HOH . D 4 HOH A 173 673 182 HOH HOH . D 4 HOH A 174 674 125 HOH HOH . D 4 HOH A 175 675 185 HOH HOH . D 4 HOH A 176 676 61 HOH HOH . D 4 HOH A 177 677 152 HOH HOH . D 4 HOH A 178 678 136 HOH HOH . D 4 HOH A 179 679 115 HOH HOH . D 4 HOH A 180 680 161 HOH HOH . D 4 HOH A 181 681 218 HOH HOH . D 4 HOH A 182 682 213 HOH HOH . D 4 HOH A 183 683 6 HOH HOH . D 4 HOH A 184 684 155 HOH HOH . D 4 HOH A 185 685 98 HOH HOH . D 4 HOH A 186 686 172 HOH HOH . D 4 HOH A 187 687 137 HOH HOH . D 4 HOH A 188 688 159 HOH HOH . D 4 HOH A 189 689 205 HOH HOH . D 4 HOH A 190 690 180 HOH HOH . D 4 HOH A 191 691 126 HOH HOH . D 4 HOH A 192 692 200 HOH HOH . D 4 HOH A 193 693 195 HOH HOH . D 4 HOH A 194 694 80 HOH HOH . D 4 HOH A 195 695 209 HOH HOH . D 4 HOH A 196 696 202 HOH HOH . D 4 HOH A 197 697 177 HOH HOH . D 4 HOH A 198 698 164 HOH HOH . D 4 HOH A 199 699 191 HOH HOH . D 4 HOH A 200 700 86 HOH HOH . D 4 HOH A 201 701 99 HOH HOH . D 4 HOH A 202 702 193 HOH HOH . D 4 HOH A 203 703 224 HOH HOH . D 4 HOH A 204 704 173 HOH HOH . D 4 HOH A 205 705 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 N5Q . . . B 2 -120.012 -177.707 314.023 1 24.43 ? C12 N5Q 401 A 1 HETATM 2 C C14 N5Q . . . B 2 -119.814 -176.536 312.156 1 27.23 ? C14 N5Q 401 A 1 HETATM 3 C C15 N5Q . . . B 2 -119.792 -175.522 313.053 1 25.88 ? C15 N5Q 401 A 1 HETATM 4 C C17 N5Q . . . B 2 -119.615 -176.381 310.706 1 27.78 ? C17 N5Q 401 A 1 HETATM 5 C C18 N5Q . . . B 2 -119.755 -177.461 309.873 1 28.69 ? C18 N5Q 401 A 1 HETATM 6 C C19 N5Q . . . B 2 -119.472 -177.364 308.491 1 28.85 ? C19 N5Q 401 A 1 HETATM 7 C C22 N5Q . . . B 2 -118.86 -177.127 305.78 1 35.28 ? C22 N5Q 401 A 1 HETATM 8 C C23 N5Q . . . B 2 -118.722 -176.041 306.595 1 33.2 ? C23 N5Q 401 A 1 HETATM 9 C C26 N5Q . . . B 2 -119.21 -175.155 310.176 1 29.58 ? C26 N5Q 401 A 1 HETATM 10 C C02 N5Q . . . B 2 -119.593 -184.312 313.702 1 16.16 ? C02 N5Q 401 A 1 HETATM 11 C C04 N5Q . . . B 2 -119.791 -182.876 314.001 1 18.77 ? C04 N5Q 401 A 1 HETATM 12 C C05 N5Q . . . B 2 -119.859 -182.411 315.31 1 18 ? C05 N5Q 401 A 1 HETATM 13 C C06 N5Q . . . B 2 -119.985 -181.062 315.577 1 20.51 ? C06 N5Q 401 A 1 HETATM 14 C C07 N5Q . . . B 2 -120.047 -180.147 314.538 1 20.67 ? C07 N5Q 401 A 1 HETATM 15 C C08 N5Q . . . B 2 -120.007 -180.592 313.223 1 22.88 ? C08 N5Q 401 A 1 HETATM 16 C C09 N5Q . . . B 2 -119.88 -181.944 312.953 1 21.79 ? C09 N5Q 401 A 1 HETATM 17 C C20 N5Q . . . B 2 -119.612 -178.459 307.609 1 32.02 ? C20 N5Q 401 A 1 HETATM 18 C C21 N5Q . . . B 2 -119.308 -178.332 306.285 1 34.55 ? C21 N5Q 401 A 1 HETATM 19 C C24 N5Q . . . B 2 -119.029 -176.128 307.973 1 30.3 ? C24 N5Q 401 A 1 HETATM 20 C C25 N5Q . . . B 2 -118.919 -175.029 308.854 1 31.3 ? C25 N5Q 401 A 1 HETATM 21 N N11 N5Q . . . B 2 -120.069 -178.772 314.847 1 25.4 ? N11 N5Q 401 A 1 HETATM 22 N N13 N5Q . . . B 2 -119.954 -177.801 312.716 1 24.76 ? N13 N5Q 401 A 1 HETATM 23 O O01 N5Q . . . B 2 -119.577 -184.722 312.561 1 21.13 ? O01 N5Q 401 A 1 HETATM 24 O O03 N5Q . . . B 2 -119.479 -185.072 314.737 1 21.29 ? O03 N5Q 401 A 1 HETATM 25 O O10 N5Q . . . B 2 -119.832 -182.351 311.66 1 25.53 ? O10 N5Q 401 A 1 HETATM 26 S S16 N5Q . . . B 2 -119.922 -176.096 314.657 1 34.21 ? S16 N5Q 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #