data_6YPI # _model_server_result.job_id hJeN6wzjIb6wIgkgSSUdyg _model_server_result.datetime_utc '2024-11-21 23:12:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ypi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6YPI # _exptl.entry_id 6YPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.349 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.81 _cell.angle_gamma 90 _cell.entry_id 6YPI _cell.length_a 62.237 _cell.length_b 35.015 _cell.length_c 43.229 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 37 A CYS 35 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 A NE2 HIS 63 A HIS 61 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 A NE2 HIS 67 A HIS 65 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 B ZN ZN . A ZN 101 1_555 E O2 BEZ . A BEZ 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? # _chem_comp.formula 'C12 H19 N O3 S' _chem_comp.formula_weight 257.349 _chem_comp.id DMX _chem_comp.mon_nstd_flag . _chem_comp.name 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DMX sing 98 n y C1 C6 DMX doub 99 n y C1 H1 DMX sing 100 n n C2 C3 DMX doub 101 n y C2 H2 DMX sing 102 n n C3 C4 DMX sing 103 n y C3 H3 DMX sing 104 n n C4 C5 DMX doub 105 n y C4 C7 DMX sing 106 n n C5 C6 DMX sing 107 n y C5 H5 DMX sing 108 n n C6 H6 DMX sing 109 n n C7 N8 DMX sing 110 n n C7 H71 DMX sing 111 n n C7 H72 DMX sing 112 n n N8 C9 DMX sing 113 n n N8 C12 DMX sing 114 n n N8 C13 DMX sing 115 n n C9 C17 DMX sing 116 n n C9 H91 DMX sing 117 n n C9 H92 DMX sing 118 n n C10 S11 DMX sing 119 n n C10 C17 DMX sing 120 n n C10 H101 DMX sing 121 n n C10 H102 DMX sing 122 n n S11 O14 DMX sing 123 n n S11 O15 DMX doub 124 n n S11 O16 DMX doub 125 n n C12 H121 DMX sing 126 n n C12 H122 DMX sing 127 n n C12 H123 DMX sing 128 n n C13 H131 DMX sing 129 n n C13 H132 DMX sing 130 n n C13 H133 DMX sing 131 n n C17 H171 DMX sing 132 n n C17 H172 DMX sing 133 n n # _atom_sites.entry_id 6YPI _atom_sites.fract_transf_matrix[1][1] 0.016068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 3 PEG A 1 102 1 PEG PEG . D 4 DMX A 1 103 1 DMX DRG . E 5 BEZ A 1 104 1 BEZ BEZ . F 6 HOH A 1 201 23 HOH HOH . F 6 HOH A 2 202 31 HOH HOH . F 6 HOH A 3 203 6 HOH HOH . F 6 HOH A 4 204 16 HOH HOH . F 6 HOH A 5 205 27 HOH HOH . F 6 HOH A 6 206 11 HOH HOH . F 6 HOH A 7 207 26 HOH HOH . F 6 HOH A 8 208 4 HOH HOH . F 6 HOH A 9 209 3 HOH HOH . F 6 HOH A 10 210 17 HOH HOH . F 6 HOH A 11 211 24 HOH HOH . F 6 HOH A 12 212 12 HOH HOH . F 6 HOH A 13 213 30 HOH HOH . F 6 HOH A 14 214 13 HOH HOH . F 6 HOH A 15 215 19 HOH HOH . F 6 HOH A 16 216 22 HOH HOH . F 6 HOH A 17 217 2 HOH HOH . F 6 HOH A 18 218 8 HOH HOH . F 6 HOH A 19 219 28 HOH HOH . F 6 HOH A 20 220 7 HOH HOH . F 6 HOH A 21 221 33 HOH HOH . F 6 HOH A 22 222 32 HOH HOH . F 6 HOH A 23 223 5 HOH HOH . F 6 HOH A 24 224 10 HOH HOH . F 6 HOH A 25 225 14 HOH HOH . F 6 HOH A 26 226 1 HOH HOH . F 6 HOH A 27 227 21 HOH HOH . F 6 HOH A 28 228 20 HOH HOH . F 6 HOH A 29 229 9 HOH HOH . F 6 HOH A 30 230 34 HOH HOH . F 6 HOH A 31 231 18 HOH HOH . F 6 HOH A 32 232 15 HOH HOH . F 6 HOH A 33 233 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMX . A . D 4 21.527 13.837 27.251 0.5 25.55 ? C1 DMX 103 A 1 HETATM 2 C C1 DMX . B . D 4 21.156 13.49 27.507 0.46 31.49 ? C1 DMX 103 A 1 HETATM 3 C C2 DMX . A . D 4 21.855 15.082 27.784 0.5 31.25 ? C2 DMX 103 A 1 HETATM 4 C C2 DMX . B . D 4 21.384 14.82 27.847 0.46 31.94 ? C2 DMX 103 A 1 HETATM 5 C C3 DMX . A . D 4 22.218 15.195 29.125 0.5 30.22 ? C3 DMX 103 A 1 HETATM 6 C C3 DMX . B . D 4 21.914 15.137 29.093 0.46 30.11 ? C3 DMX 103 A 1 HETATM 7 C C4 DMX . A . D 4 22.279 14.067 29.946 0.5 31.99 ? C4 DMX 103 A 1 HETATM 8 C C4 DMX . B . D 4 22.245 14.136 30.008 0.46 32.02 ? C4 DMX 103 A 1 HETATM 9 C C5 DMX . A . D 4 21.929 12.83 29.407 0.5 30.01 ? C5 DMX 103 A 1 HETATM 10 C C5 DMX . B . D 4 21.992 12.808 29.661 0.46 30.9 ? C5 DMX 103 A 1 HETATM 11 C C6 DMX . A . D 4 21.565 12.709 28.069 0.5 33.17 ? C6 DMX 103 A 1 HETATM 12 C C6 DMX . B . D 4 21.461 12.482 28.418 0.46 31.99 ? C6 DMX 103 A 1 HETATM 13 C C7 DMX . A . D 4 22.63 14.166 31.311 0.5 33.6 ? C7 DMX 103 A 1 HETATM 14 C C7 DMX . B . D 4 22.775 14.458 31.281 0.46 34.08 ? C7 DMX 103 A 1 HETATM 15 N N8 DMX . A . D 4 24.076 14.27 31.649 0.5 31.57 ? N8 DMX 103 A 1 HETATM 16 N N8 DMX . B . D 4 24.224 14.807 31.346 0.46 33.07 ? N8 DMX 103 A 1 HETATM 17 C C9 DMX . A . D 4 24.891 13.304 30.887 0.5 36.55 ? C9 DMX 103 A 1 HETATM 18 C C9 DMX . B . D 4 24.644 14.744 32.768 0.46 34.26 ? C9 DMX 103 A 1 HETATM 19 C C10 DMX . A . D 4 27.213 12.476 30.346 0.5 28.69 ? C10 DMX 103 A 1 HETATM 20 C C10 DMX . B . D 4 27.151 15.11 32.959 0.46 40.22 ? C10 DMX 103 A 1 HETATM 21 S S11 DMX . A . D 4 26.691 10.723 30.267 0.5 27.1 ? S11 DMX 103 A 1 HETATM 22 S S11 DMX . B . D 4 28.412 16.428 32.818 0.46 49.19 ? S11 DMX 103 A 1 HETATM 23 C C12 DMX . A . D 4 24.583 15.639 31.432 0.5 34.24 ? C12 DMX 103 A 1 HETATM 24 C C12 DMX . B . D 4 25.01 13.833 30.563 0.46 39.3 ? C12 DMX 103 A 1 HETATM 25 C C13 DMX . A . D 4 24.201 13.964 33.082 0.5 32.43 ? C13 DMX 103 A 1 HETATM 26 C C13 DMX . B . D 4 24.473 16.174 30.84 0.46 32.56 ? C13 DMX 103 A 1 HETATM 27 O O14 DMX . A . D 4 26.628 10.164 31.683 0.5 30.44 ? O14 DMX 103 A 1 HETATM 28 O O14 DMX . B . D 4 29.344 16.138 31.645 0.46 36.02 ? O14 DMX 103 A 1 HETATM 29 O O15 DMX . A . D 4 27.671 9.913 29.416 0.5 27.92 ? O15 DMX 103 A 1 HETATM 30 O O15 DMX . B . D 4 29.23 16.467 34.111 0.46 46.51 ? O15 DMX 103 A 1 HETATM 31 O O16 DMX . A . D 4 25.322 10.617 29.622 0.5 24.47 ? O16 DMX 103 A 1 HETATM 32 O O16 DMX . B . D 4 27.73 17.78 32.603 0.46 43.3 ? O16 DMX 103 A 1 HETATM 33 C C17 DMX . A . D 4 26.357 13.262 31.348 0.5 24.36 ? C17 DMX 103 A 1 HETATM 34 C C17 DMX . B . D 4 25.761 15.741 33.13 0.46 36.73 ? C17 DMX 103 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #