data_6YPI # _model_server_result.job_id LPJOrh5P1i1eJ-CRp8rCdg _model_server_result.datetime_utc '2024-11-21 23:18:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ypi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 6YPI # _exptl.entry_id 6YPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.81 _cell.angle_gamma 90 _cell.entry_id 6YPI _cell.length_a 62.237 _cell.length_b 35.015 _cell.length_c 43.229 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 37 A CYS 35 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 A NE2 HIS 63 A HIS 61 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 A NE2 HIS 67 A HIS 65 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 B ZN ZN . A ZN 101 1_555 E O2 BEZ . A BEZ 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 6YPI _atom_sites.fract_transf_matrix[1][1] 0.016068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 3 PEG A 1 102 1 PEG PEG . D 4 DMX A 1 103 1 DMX DRG . E 5 BEZ A 1 104 1 BEZ BEZ . F 6 HOH A 1 201 23 HOH HOH . F 6 HOH A 2 202 31 HOH HOH . F 6 HOH A 3 203 6 HOH HOH . F 6 HOH A 4 204 16 HOH HOH . F 6 HOH A 5 205 27 HOH HOH . F 6 HOH A 6 206 11 HOH HOH . F 6 HOH A 7 207 26 HOH HOH . F 6 HOH A 8 208 4 HOH HOH . F 6 HOH A 9 209 3 HOH HOH . F 6 HOH A 10 210 17 HOH HOH . F 6 HOH A 11 211 24 HOH HOH . F 6 HOH A 12 212 12 HOH HOH . F 6 HOH A 13 213 30 HOH HOH . F 6 HOH A 14 214 13 HOH HOH . F 6 HOH A 15 215 19 HOH HOH . F 6 HOH A 16 216 22 HOH HOH . F 6 HOH A 17 217 2 HOH HOH . F 6 HOH A 18 218 8 HOH HOH . F 6 HOH A 19 219 28 HOH HOH . F 6 HOH A 20 220 7 HOH HOH . F 6 HOH A 21 221 33 HOH HOH . F 6 HOH A 22 222 32 HOH HOH . F 6 HOH A 23 223 5 HOH HOH . F 6 HOH A 24 224 10 HOH HOH . F 6 HOH A 25 225 14 HOH HOH . F 6 HOH A 26 226 1 HOH HOH . F 6 HOH A 27 227 21 HOH HOH . F 6 HOH A 28 228 20 HOH HOH . F 6 HOH A 29 229 9 HOH HOH . F 6 HOH A 30 230 34 HOH HOH . F 6 HOH A 31 231 18 HOH HOH . F 6 HOH A 32 232 15 HOH HOH . F 6 HOH A 33 233 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . E 5 10.929 21.26 23.827 1 36.73 ? C BEZ 104 A 1 HETATM 2 O O1 BEZ . . . E 5 10.496 21.031 22.68 1 38.53 ? O1 BEZ 104 A 1 HETATM 3 O O2 BEZ . . . E 5 11.475 22.352 24.036 1 25.84 ? O2 BEZ 104 A 1 HETATM 4 C C1 BEZ . . . E 5 10.801 20.262 24.94 1 28.84 ? C1 BEZ 104 A 1 HETATM 5 C C2 BEZ . . . E 5 11.182 20.625 26.224 1 30.56 ? C2 BEZ 104 A 1 HETATM 6 C C3 BEZ . . . E 5 11.077 19.714 27.263 1 29.18 ? C3 BEZ 104 A 1 HETATM 7 C C4 BEZ . . . E 5 10.596 18.436 27.027 1 28.04 ? C4 BEZ 104 A 1 HETATM 8 C C5 BEZ . . . E 5 10.201 18.07 25.748 1 35.41 ? C5 BEZ 104 A 1 HETATM 9 C C6 BEZ . . . E 5 10.31 18.981 24.699 1 36.6 ? C6 BEZ 104 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #