data_6YPN
#
_model_server_result.job_id            AsjKz7GXJ21h4vAcNxz2QA 
_model_server_result.datetime_utc      '2024-11-06 18:45:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ypn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    6YPN 
#
_exptl.entry_id    6YPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.9 
_cell.angle_gamma         90 
_cell.entry_id            6YPN 
_cell.length_a            57.392 
_cell.length_b            45.225 
_cell.length_c            62.631 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 161 B ASN 161 1_555 E MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 A OD2 ASP 175 B ASP 175 1_555 E MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 A OD1 ASP 175 B ASP 175 1_555 F MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 A OD2 ASP 175 B ASP 175 1_555 F MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 B O2B ADP . B ADP 401 1_555 E MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc6 B O1A ADP . B ADP 401 1_555 E MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc7 B O3B ADP . B ADP 401 1_555 F MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc8 E MG MG . B MG 404 1_555 G O4 PO4 . B PO4 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc9 E MG MG . B MG 404 1_555 H O HOH . B HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc10 F MG MG . B MG 405 1_555 G O3 PO4 . B PO4 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc11 F MG MG . B MG 405 1_555 H O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc12 F MG MG . B MG 405 1_555 H O HOH . B HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YPN 
_atom_sites.fract_transf_matrix[1][1]    0.017424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006306 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP B 1 401 401 ADP ADP . 
C 3 ACT B 1 402 501 ACT ACT . 
D 2 ADP B 1 403 601 ADP ADP . 
E 4 MG B 1 404 1 MG MG . 
F 4 MG B 1 405 2 MG MG . 
G 5 PO4 B 1 406 1 PO4 PO4 . 
H 6 HOH B 1 501 158 HOH HOH . 
H 6 HOH B 2 502 139 HOH HOH . 
H 6 HOH B 3 503 197 HOH HOH . 
H 6 HOH B 4 504 195 HOH HOH . 
H 6 HOH B 5 505 193 HOH HOH . 
H 6 HOH B 6 506 150 HOH HOH . 
H 6 HOH B 7 507 46 HOH HOH . 
H 6 HOH B 8 508 43 HOH HOH . 
H 6 HOH B 9 509 1 HOH HOH . 
H 6 HOH B 10 510 61 HOH HOH . 
H 6 HOH B 11 511 104 HOH HOH . 
H 6 HOH B 12 512 27 HOH HOH . 
H 6 HOH B 13 513 72 HOH HOH . 
H 6 HOH B 14 514 5 HOH HOH . 
H 6 HOH B 15 515 31 HOH HOH . 
H 6 HOH B 16 516 44 HOH HOH . 
H 6 HOH B 17 517 174 HOH HOH . 
H 6 HOH B 18 518 175 HOH HOH . 
H 6 HOH B 19 519 107 HOH HOH . 
H 6 HOH B 20 520 66 HOH HOH . 
H 6 HOH B 21 521 50 HOH HOH . 
H 6 HOH B 22 522 41 HOH HOH . 
H 6 HOH B 23 523 152 HOH HOH . 
H 6 HOH B 24 524 124 HOH HOH . 
H 6 HOH B 25 525 191 HOH HOH . 
H 6 HOH B 26 526 160 HOH HOH . 
H 6 HOH B 27 527 119 HOH HOH . 
H 6 HOH B 28 528 3 HOH HOH . 
H 6 HOH B 29 529 180 HOH HOH . 
H 6 HOH B 30 530 4 HOH HOH . 
H 6 HOH B 31 531 78 HOH HOH . 
H 6 HOH B 32 532 192 HOH HOH . 
H 6 HOH B 33 533 54 HOH HOH . 
H 6 HOH B 34 534 194 HOH HOH . 
H 6 HOH B 35 535 68 HOH HOH . 
H 6 HOH B 36 536 95 HOH HOH . 
H 6 HOH B 37 537 171 HOH HOH . 
H 6 HOH B 38 538 86 HOH HOH . 
H 6 HOH B 39 539 33 HOH HOH . 
H 6 HOH B 40 540 145 HOH HOH . 
H 6 HOH B 41 541 125 HOH HOH . 
H 6 HOH B 42 542 186 HOH HOH . 
H 6 HOH B 43 543 144 HOH HOH . 
H 6 HOH B 44 544 52 HOH HOH . 
H 6 HOH B 45 545 25 HOH HOH . 
H 6 HOH B 46 546 147 HOH HOH . 
H 6 HOH B 47 547 21 HOH HOH . 
H 6 HOH B 48 548 73 HOH HOH . 
H 6 HOH B 49 549 24 HOH HOH . 
H 6 HOH B 50 550 45 HOH HOH . 
H 6 HOH B 51 551 105 HOH HOH . 
H 6 HOH B 52 552 198 HOH HOH . 
H 6 HOH B 53 553 111 HOH HOH . 
H 6 HOH B 54 554 188 HOH HOH . 
H 6 HOH B 55 555 153 HOH HOH . 
H 6 HOH B 56 556 168 HOH HOH . 
H 6 HOH B 57 557 115 HOH HOH . 
H 6 HOH B 58 558 131 HOH HOH . 
H 6 HOH B 59 559 42 HOH HOH . 
H 6 HOH B 60 560 22 HOH HOH . 
H 6 HOH B 61 561 51 HOH HOH . 
H 6 HOH B 62 562 69 HOH HOH . 
H 6 HOH B 63 563 36 HOH HOH . 
H 6 HOH B 64 564 182 HOH HOH . 
H 6 HOH B 65 565 75 HOH HOH . 
H 6 HOH B 66 566 89 HOH HOH . 
H 6 HOH B 67 567 15 HOH HOH . 
H 6 HOH B 68 568 64 HOH HOH . 
H 6 HOH B 69 569 7 HOH HOH . 
H 6 HOH B 70 570 118 HOH HOH . 
H 6 HOH B 71 571 172 HOH HOH . 
H 6 HOH B 72 572 28 HOH HOH . 
H 6 HOH B 73 573 88 HOH HOH . 
H 6 HOH B 74 574 135 HOH HOH . 
H 6 HOH B 75 575 102 HOH HOH . 
H 6 HOH B 76 576 53 HOH HOH . 
H 6 HOH B 77 577 62 HOH HOH . 
H 6 HOH B 78 578 74 HOH HOH . 
H 6 HOH B 79 579 128 HOH HOH . 
H 6 HOH B 80 580 116 HOH HOH . 
H 6 HOH B 81 581 17 HOH HOH . 
H 6 HOH B 82 582 106 HOH HOH . 
H 6 HOH B 83 583 38 HOH HOH . 
H 6 HOH B 84 584 166 HOH HOH . 
H 6 HOH B 85 585 85 HOH HOH . 
H 6 HOH B 86 586 91 HOH HOH . 
H 6 HOH B 87 587 159 HOH HOH . 
H 6 HOH B 88 588 35 HOH HOH . 
H 6 HOH B 89 589 37 HOH HOH . 
H 6 HOH B 90 590 179 HOH HOH . 
H 6 HOH B 91 591 10 HOH HOH . 
H 6 HOH B 92 592 181 HOH HOH . 
H 6 HOH B 93 593 2 HOH HOH . 
H 6 HOH B 94 594 122 HOH HOH . 
H 6 HOH B 95 595 49 HOH HOH . 
H 6 HOH B 96 596 142 HOH HOH . 
H 6 HOH B 97 597 103 HOH HOH . 
H 6 HOH B 98 598 126 HOH HOH . 
H 6 HOH B 99 599 138 HOH HOH . 
H 6 HOH B 100 600 48 HOH HOH . 
H 6 HOH B 101 601 81 HOH HOH . 
H 6 HOH B 102 602 121 HOH HOH . 
H 6 HOH B 103 603 143 HOH HOH . 
H 6 HOH B 104 604 167 HOH HOH . 
H 6 HOH B 105 605 20 HOH HOH . 
H 6 HOH B 106 606 70 HOH HOH . 
H 6 HOH B 107 607 101 HOH HOH . 
H 6 HOH B 108 608 87 HOH HOH . 
H 6 HOH B 109 609 19 HOH HOH . 
H 6 HOH B 110 610 16 HOH HOH . 
H 6 HOH B 111 611 112 HOH HOH . 
H 6 HOH B 112 612 149 HOH HOH . 
H 6 HOH B 113 613 165 HOH HOH . 
H 6 HOH B 114 614 71 HOH HOH . 
H 6 HOH B 115 615 82 HOH HOH . 
H 6 HOH B 116 616 8 HOH HOH . 
H 6 HOH B 117 617 32 HOH HOH . 
H 6 HOH B 118 618 6 HOH HOH . 
H 6 HOH B 119 619 13 HOH HOH . 
H 6 HOH B 120 620 26 HOH HOH . 
H 6 HOH B 121 621 137 HOH HOH . 
H 6 HOH B 122 622 141 HOH HOH . 
H 6 HOH B 123 623 109 HOH HOH . 
H 6 HOH B 124 624 83 HOH HOH . 
H 6 HOH B 125 625 12 HOH HOH . 
H 6 HOH B 126 626 93 HOH HOH . 
H 6 HOH B 127 627 56 HOH HOH . 
H 6 HOH B 128 628 23 HOH HOH . 
H 6 HOH B 129 629 11 HOH HOH . 
H 6 HOH B 130 630 90 HOH HOH . 
H 6 HOH B 131 631 67 HOH HOH . 
H 6 HOH B 132 632 176 HOH HOH . 
H 6 HOH B 133 633 127 HOH HOH . 
H 6 HOH B 134 634 99 HOH HOH . 
H 6 HOH B 135 635 133 HOH HOH . 
H 6 HOH B 136 636 108 HOH HOH . 
H 6 HOH B 137 637 34 HOH HOH . 
H 6 HOH B 138 638 59 HOH HOH . 
H 6 HOH B 139 639 161 HOH HOH . 
H 6 HOH B 140 640 18 HOH HOH . 
H 6 HOH B 141 641 156 HOH HOH . 
H 6 HOH B 142 642 130 HOH HOH . 
H 6 HOH B 143 643 136 HOH HOH . 
H 6 HOH B 144 644 65 HOH HOH . 
H 6 HOH B 145 645 9 HOH HOH . 
H 6 HOH B 146 646 163 HOH HOH . 
H 6 HOH B 147 647 47 HOH HOH . 
H 6 HOH B 148 648 196 HOH HOH . 
H 6 HOH B 149 649 184 HOH HOH . 
H 6 HOH B 150 650 40 HOH HOH . 
H 6 HOH B 151 651 76 HOH HOH . 
H 6 HOH B 152 652 162 HOH HOH . 
H 6 HOH B 153 653 164 HOH HOH . 
H 6 HOH B 154 654 94 HOH HOH . 
H 6 HOH B 155 655 189 HOH HOH . 
H 6 HOH B 156 656 84 HOH HOH . 
H 6 HOH B 157 657 120 HOH HOH . 
H 6 HOH B 158 658 132 HOH HOH . 
H 6 HOH B 159 659 79 HOH HOH . 
H 6 HOH B 160 660 30 HOH HOH . 
H 6 HOH B 161 661 170 HOH HOH . 
H 6 HOH B 162 662 77 HOH HOH . 
H 6 HOH B 163 663 151 HOH HOH . 
H 6 HOH B 164 664 185 HOH HOH . 
H 6 HOH B 165 665 146 HOH HOH . 
H 6 HOH B 166 666 113 HOH HOH . 
H 6 HOH B 167 667 114 HOH HOH . 
H 6 HOH B 168 668 183 HOH HOH . 
H 6 HOH B 169 669 58 HOH HOH . 
H 6 HOH B 170 670 187 HOH HOH . 
H 6 HOH B 171 671 80 HOH HOH . 
H 6 HOH B 172 672 123 HOH HOH . 
H 6 HOH B 173 673 14 HOH HOH . 
H 6 HOH B 174 674 157 HOH HOH . 
H 6 HOH B 175 675 148 HOH HOH . 
H 6 HOH B 176 676 97 HOH HOH . 
H 6 HOH B 177 677 173 HOH HOH . 
H 6 HOH B 178 678 96 HOH HOH . 
H 6 HOH B 179 679 178 HOH HOH . 
H 6 HOH B 180 680 110 HOH HOH . 
H 6 HOH B 181 681 177 HOH HOH . 
H 6 HOH B 182 682 169 HOH HOH . 
H 6 HOH B 183 683 92 HOH HOH . 
H 6 HOH B 184 684 140 HOH HOH . 
H 6 HOH B 185 685 154 HOH HOH . 
H 6 HOH B 186 686 129 HOH HOH . 
H 6 HOH B 187 687 155 HOH HOH . 
H 6 HOH B 188 688 134 HOH HOH . 
H 6 HOH B 189 689 100 HOH HOH . 
H 6 HOH B 190 690 190 HOH HOH . 
H 6 HOH B 191 691 117 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -20.016 
_atom_site.Cartn_y               -5.053 
_atom_site.Cartn_z               -19.03 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.18 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           405 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#