data_6YPR # _model_server_result.job_id j28qMzg96B_Sh7MicAOH3Q _model_server_result.datetime_utc '2024-12-02 12:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ypr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6YPR # _exptl.entry_id 6YPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YPR _cell.length_a 72.076 _cell.length_b 72.076 _cell.length_c 103.576 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6YPR _atom_sites.fract_transf_matrix[1][1] 0.013874 _atom_sites.fract_transf_matrix[1][2] 0.00801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL AAA 1 201 201 GOL GOL . C 2 GOL AAA 1 202 301 GOL GOL . D 2 GOL AAA 1 203 401 GOL GOL . E 3 HOH AAA 1 301 36 HOH HOH . E 3 HOH AAA 2 302 30 HOH HOH . E 3 HOH AAA 3 303 46 HOH HOH . E 3 HOH AAA 4 304 66 HOH HOH . E 3 HOH AAA 5 305 2 HOH HOH . E 3 HOH AAA 6 306 51 HOH HOH . E 3 HOH AAA 7 307 77 HOH HOH . E 3 HOH AAA 8 308 29 HOH HOH . E 3 HOH AAA 9 309 83 HOH HOH . E 3 HOH AAA 10 310 47 HOH HOH . E 3 HOH AAA 11 311 26 HOH HOH . E 3 HOH AAA 12 312 6 HOH HOH . E 3 HOH AAA 13 313 32 HOH HOH . E 3 HOH AAA 14 314 27 HOH HOH . E 3 HOH AAA 15 315 7 HOH HOH . E 3 HOH AAA 16 316 22 HOH HOH . E 3 HOH AAA 17 317 70 HOH HOH . E 3 HOH AAA 18 318 1 HOH HOH . E 3 HOH AAA 19 319 14 HOH HOH . E 3 HOH AAA 20 320 11 HOH HOH . E 3 HOH AAA 21 321 68 HOH HOH . E 3 HOH AAA 22 322 4 HOH HOH . E 3 HOH AAA 23 323 39 HOH HOH . E 3 HOH AAA 24 324 5 HOH HOH . E 3 HOH AAA 25 325 82 HOH HOH . E 3 HOH AAA 26 326 12 HOH HOH . E 3 HOH AAA 27 327 25 HOH HOH . E 3 HOH AAA 28 328 8 HOH HOH . E 3 HOH AAA 29 329 49 HOH HOH . E 3 HOH AAA 30 330 31 HOH HOH . E 3 HOH AAA 31 331 18 HOH HOH . E 3 HOH AAA 32 332 72 HOH HOH . E 3 HOH AAA 33 333 10 HOH HOH . E 3 HOH AAA 34 334 40 HOH HOH . E 3 HOH AAA 35 335 23 HOH HOH . E 3 HOH AAA 36 336 41 HOH HOH . E 3 HOH AAA 37 337 50 HOH HOH . E 3 HOH AAA 38 338 16 HOH HOH . E 3 HOH AAA 39 339 21 HOH HOH . E 3 HOH AAA 40 340 13 HOH HOH . E 3 HOH AAA 41 341 37 HOH HOH . E 3 HOH AAA 42 342 52 HOH HOH . E 3 HOH AAA 43 343 19 HOH HOH . E 3 HOH AAA 44 344 69 HOH HOH . E 3 HOH AAA 45 345 9 HOH HOH . E 3 HOH AAA 46 346 58 HOH HOH . E 3 HOH AAA 47 347 20 HOH HOH . E 3 HOH AAA 48 348 24 HOH HOH . E 3 HOH AAA 49 349 38 HOH HOH . E 3 HOH AAA 50 350 3 HOH HOH . E 3 HOH AAA 51 351 17 HOH HOH . E 3 HOH AAA 52 352 28 HOH HOH . E 3 HOH AAA 53 353 84 HOH HOH . E 3 HOH AAA 54 354 42 HOH HOH . E 3 HOH AAA 55 355 75 HOH HOH . E 3 HOH AAA 56 356 35 HOH HOH . E 3 HOH AAA 57 357 80 HOH HOH . E 3 HOH AAA 58 358 79 HOH HOH . E 3 HOH AAA 59 359 71 HOH HOH . E 3 HOH AAA 60 360 33 HOH HOH . E 3 HOH AAA 61 361 44 HOH HOH . E 3 HOH AAA 62 362 76 HOH HOH . E 3 HOH AAA 63 363 59 HOH HOH . E 3 HOH AAA 64 364 74 HOH HOH . E 3 HOH AAA 65 365 57 HOH HOH . E 3 HOH AAA 66 366 34 HOH HOH . E 3 HOH AAA 67 367 78 HOH HOH . E 3 HOH AAA 68 368 61 HOH HOH . E 3 HOH AAA 69 369 67 HOH HOH . E 3 HOH AAA 70 370 48 HOH HOH . E 3 HOH AAA 71 371 73 HOH HOH . E 3 HOH AAA 72 372 54 HOH HOH . E 3 HOH AAA 73 373 43 HOH HOH . E 3 HOH AAA 74 374 45 HOH HOH . E 3 HOH AAA 75 375 15 HOH HOH . E 3 HOH AAA 76 376 81 HOH HOH . E 3 HOH AAA 77 377 60 HOH HOH . E 3 HOH AAA 78 378 53 HOH HOH . E 3 HOH AAA 79 379 55 HOH HOH . E 3 HOH AAA 80 380 65 HOH HOH . E 3 HOH AAA 81 381 62 HOH HOH . E 3 HOH AAA 82 382 63 HOH HOH . E 3 HOH AAA 83 383 64 HOH HOH . E 3 HOH AAA 84 384 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 3.358 -42.436 -1.003 1 23.86 ? C1 GOL 203 AAA 1 HETATM 2 O O1 GOL . . . D 2 3.428 -41.103 -0.523 1 19.13 ? O1 GOL 203 AAA 1 HETATM 3 C C2 GOL . . . D 2 2.476 -43.283 -0.122 1 30.18 ? C2 GOL 203 AAA 1 HETATM 4 O O2 GOL . . . D 2 1.252 -42.603 0.102 1 35.05 ? O2 GOL 203 AAA 1 HETATM 5 C C3 GOL . . . D 2 2.166 -44.669 -0.664 1 30.47 ? C3 GOL 203 AAA 1 HETATM 6 O O3 GOL . . . D 2 1.206 -44.674 -1.745 1 24.65 ? O3 GOL 203 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #