data_6YPS # _model_server_result.job_id chUhyfQi7iShqtUgDgBaSw _model_server_result.datetime_utc '2024-11-24 19:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6YPS # _exptl.entry_id 6YPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-oxidanylbenzenecarboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YPS _cell.length_a 51.736 _cell.length_b 71.316 _cell.length_c 97.495 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C7 H8 N2 O' _chem_comp.formula_weight 136.151 _chem_comp.id P72 _chem_comp.mon_nstd_flag . _chem_comp.name 4-oxidanylbenzenecarboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 P72 sing 246 n n C4 C3 P72 doub 247 n y C4 C5 P72 sing 248 n y C3 C2 P72 sing 249 n y C5 C6 P72 doub 250 n y C2 C1 P72 doub 251 n y N1 C P72 doub 252 n n C1 C6 P72 sing 253 n y C1 C P72 sing 254 n n C N P72 sing 255 n n N1 H1 P72 sing 256 n n C2 H2 P72 sing 257 n n C3 H3 P72 sing 258 n n C6 H4 P72 sing 259 n n N H5 P72 sing 260 n n N H6 P72 sing 261 n n O H7 P72 sing 262 n n C5 H8 P72 sing 263 n n # _atom_sites.entry_id 6YPS _atom_sites.fract_transf_matrix[1][1] 0.019329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 2 DMS DMS . C 3 P72 A 1 402 1 P72 209 . D 4 HOH A 1 501 182 HOH HOH . D 4 HOH A 2 502 211 HOH HOH . D 4 HOH A 3 503 263 HOH HOH . D 4 HOH A 4 504 236 HOH HOH . D 4 HOH A 5 505 64 HOH HOH . D 4 HOH A 6 506 242 HOH HOH . D 4 HOH A 7 507 191 HOH HOH . D 4 HOH A 8 508 116 HOH HOH . D 4 HOH A 9 509 87 HOH HOH . D 4 HOH A 10 510 50 HOH HOH . D 4 HOH A 11 511 15 HOH HOH . D 4 HOH A 12 512 249 HOH HOH . D 4 HOH A 13 513 206 HOH HOH . D 4 HOH A 14 514 234 HOH HOH . D 4 HOH A 15 515 168 HOH HOH . D 4 HOH A 16 516 131 HOH HOH . D 4 HOH A 17 517 210 HOH HOH . D 4 HOH A 18 518 70 HOH HOH . D 4 HOH A 19 519 6 HOH HOH . D 4 HOH A 20 520 63 HOH HOH . D 4 HOH A 21 521 218 HOH HOH . D 4 HOH A 22 522 209 HOH HOH . D 4 HOH A 23 523 181 HOH HOH . D 4 HOH A 24 524 176 HOH HOH . D 4 HOH A 25 525 59 HOH HOH . D 4 HOH A 26 526 214 HOH HOH . D 4 HOH A 27 527 109 HOH HOH . D 4 HOH A 28 528 193 HOH HOH . D 4 HOH A 29 529 10 HOH HOH . D 4 HOH A 30 530 127 HOH HOH . D 4 HOH A 31 531 148 HOH HOH . D 4 HOH A 32 532 31 HOH HOH . D 4 HOH A 33 533 262 HOH HOH . D 4 HOH A 34 534 204 HOH HOH . D 4 HOH A 35 535 256 HOH HOH . D 4 HOH A 36 536 196 HOH HOH . D 4 HOH A 37 537 162 HOH HOH . D 4 HOH A 38 538 267 HOH HOH . D 4 HOH A 39 539 66 HOH HOH . D 4 HOH A 40 540 123 HOH HOH . D 4 HOH A 41 541 139 HOH HOH . D 4 HOH A 42 542 192 HOH HOH . D 4 HOH A 43 543 8 HOH HOH . D 4 HOH A 44 544 241 HOH HOH . D 4 HOH A 45 545 11 HOH HOH . D 4 HOH A 46 546 14 HOH HOH . D 4 HOH A 47 547 13 HOH HOH . D 4 HOH A 48 548 190 HOH HOH . D 4 HOH A 49 549 53 HOH HOH . D 4 HOH A 50 550 96 HOH HOH . D 4 HOH A 51 551 167 HOH HOH . D 4 HOH A 52 552 84 HOH HOH . D 4 HOH A 53 553 227 HOH HOH . D 4 HOH A 54 554 91 HOH HOH . D 4 HOH A 55 555 60 HOH HOH . D 4 HOH A 56 556 255 HOH HOH . D 4 HOH A 57 557 7 HOH HOH . D 4 HOH A 58 558 147 HOH HOH . D 4 HOH A 59 559 77 HOH HOH . D 4 HOH A 60 560 266 HOH HOH . D 4 HOH A 61 561 260 HOH HOH . D 4 HOH A 62 562 112 HOH HOH . D 4 HOH A 63 563 219 HOH HOH . D 4 HOH A 64 564 99 HOH HOH . D 4 HOH A 65 565 24 HOH HOH . D 4 HOH A 66 566 83 HOH HOH . D 4 HOH A 67 567 16 HOH HOH . D 4 HOH A 68 568 62 HOH HOH . D 4 HOH A 69 569 18 HOH HOH . D 4 HOH A 70 570 19 HOH HOH . D 4 HOH A 71 571 5 HOH HOH . D 4 HOH A 72 572 36 HOH HOH . D 4 HOH A 73 573 30 HOH HOH . D 4 HOH A 74 574 198 HOH HOH . D 4 HOH A 75 575 247 HOH HOH . D 4 HOH A 76 576 217 HOH HOH . D 4 HOH A 77 577 252 HOH HOH . D 4 HOH A 78 578 75 HOH HOH . D 4 HOH A 79 579 133 HOH HOH . D 4 HOH A 80 580 251 HOH HOH . D 4 HOH A 81 581 239 HOH HOH . D 4 HOH A 82 582 132 HOH HOH . D 4 HOH A 83 583 265 HOH HOH . D 4 HOH A 84 584 76 HOH HOH . D 4 HOH A 85 585 95 HOH HOH . D 4 HOH A 86 586 257 HOH HOH . D 4 HOH A 87 587 195 HOH HOH . D 4 HOH A 88 588 212 HOH HOH . D 4 HOH A 89 589 178 HOH HOH . D 4 HOH A 90 590 108 HOH HOH . D 4 HOH A 91 591 9 HOH HOH . D 4 HOH A 92 592 78 HOH HOH . D 4 HOH A 93 593 138 HOH HOH . D 4 HOH A 94 594 65 HOH HOH . D 4 HOH A 95 595 23 HOH HOH . D 4 HOH A 96 596 45 HOH HOH . D 4 HOH A 97 597 143 HOH HOH . D 4 HOH A 98 598 94 HOH HOH . D 4 HOH A 99 599 51 HOH HOH . D 4 HOH A 100 600 37 HOH HOH . D 4 HOH A 101 601 71 HOH HOH . D 4 HOH A 102 602 47 HOH HOH . D 4 HOH A 103 603 201 HOH HOH . D 4 HOH A 104 604 146 HOH HOH . D 4 HOH A 105 605 33 HOH HOH . D 4 HOH A 106 606 72 HOH HOH . D 4 HOH A 107 607 21 HOH HOH . D 4 HOH A 108 608 42 HOH HOH . D 4 HOH A 109 609 49 HOH HOH . D 4 HOH A 110 610 68 HOH HOH . D 4 HOH A 111 611 155 HOH HOH . D 4 HOH A 112 612 52 HOH HOH . D 4 HOH A 113 613 25 HOH HOH . D 4 HOH A 114 614 107 HOH HOH . D 4 HOH A 115 615 22 HOH HOH . D 4 HOH A 116 616 98 HOH HOH . D 4 HOH A 117 617 197 HOH HOH . D 4 HOH A 118 618 154 HOH HOH . D 4 HOH A 119 619 259 HOH HOH . D 4 HOH A 120 620 202 HOH HOH . D 4 HOH A 121 621 215 HOH HOH . D 4 HOH A 122 622 46 HOH HOH . D 4 HOH A 123 623 149 HOH HOH . D 4 HOH A 124 624 226 HOH HOH . D 4 HOH A 125 625 32 HOH HOH . D 4 HOH A 126 626 172 HOH HOH . D 4 HOH A 127 627 253 HOH HOH . D 4 HOH A 128 628 118 HOH HOH . D 4 HOH A 129 629 203 HOH HOH . D 4 HOH A 130 630 105 HOH HOH . D 4 HOH A 131 631 85 HOH HOH . D 4 HOH A 132 632 152 HOH HOH . D 4 HOH A 133 633 55 HOH HOH . D 4 HOH A 134 634 104 HOH HOH . D 4 HOH A 135 635 27 HOH HOH . D 4 HOH A 136 636 43 HOH HOH . D 4 HOH A 137 637 153 HOH HOH . D 4 HOH A 138 638 110 HOH HOH . D 4 HOH A 139 639 89 HOH HOH . D 4 HOH A 140 640 238 HOH HOH . D 4 HOH A 141 641 151 HOH HOH . D 4 HOH A 142 642 88 HOH HOH . D 4 HOH A 143 643 73 HOH HOH . D 4 HOH A 144 644 82 HOH HOH . D 4 HOH A 145 645 136 HOH HOH . D 4 HOH A 146 646 160 HOH HOH . D 4 HOH A 147 647 248 HOH HOH . D 4 HOH A 148 648 103 HOH HOH . D 4 HOH A 149 649 208 HOH HOH . D 4 HOH A 150 650 205 HOH HOH . D 4 HOH A 151 651 188 HOH HOH . D 4 HOH A 152 652 244 HOH HOH . D 4 HOH A 153 653 69 HOH HOH . D 4 HOH A 154 654 61 HOH HOH . D 4 HOH A 155 655 67 HOH HOH . D 4 HOH A 156 656 28 HOH HOH . D 4 HOH A 157 657 158 HOH HOH . D 4 HOH A 158 658 100 HOH HOH . D 4 HOH A 159 659 254 HOH HOH . D 4 HOH A 160 660 80 HOH HOH . D 4 HOH A 161 661 144 HOH HOH . D 4 HOH A 162 662 39 HOH HOH . D 4 HOH A 163 663 135 HOH HOH . D 4 HOH A 164 664 17 HOH HOH . D 4 HOH A 165 665 165 HOH HOH . D 4 HOH A 166 666 115 HOH HOH . D 4 HOH A 167 667 35 HOH HOH . D 4 HOH A 168 668 97 HOH HOH . D 4 HOH A 169 669 237 HOH HOH . D 4 HOH A 170 670 86 HOH HOH . D 4 HOH A 171 671 93 HOH HOH . D 4 HOH A 172 672 40 HOH HOH . D 4 HOH A 173 673 261 HOH HOH . D 4 HOH A 174 674 140 HOH HOH . D 4 HOH A 175 675 130 HOH HOH . D 4 HOH A 176 676 26 HOH HOH . D 4 HOH A 177 677 164 HOH HOH . D 4 HOH A 178 678 240 HOH HOH . D 4 HOH A 179 679 128 HOH HOH . D 4 HOH A 180 680 221 HOH HOH . D 4 HOH A 181 681 194 HOH HOH . D 4 HOH A 182 682 225 HOH HOH . D 4 HOH A 183 683 163 HOH HOH . D 4 HOH A 184 684 184 HOH HOH . D 4 HOH A 185 685 81 HOH HOH . D 4 HOH A 186 686 48 HOH HOH . D 4 HOH A 187 687 258 HOH HOH . D 4 HOH A 188 688 58 HOH HOH . D 4 HOH A 189 689 111 HOH HOH . D 4 HOH A 190 690 41 HOH HOH . D 4 HOH A 191 691 159 HOH HOH . D 4 HOH A 192 692 200 HOH HOH . D 4 HOH A 193 693 187 HOH HOH . D 4 HOH A 194 694 29 HOH HOH . D 4 HOH A 195 695 245 HOH HOH . D 4 HOH A 196 696 54 HOH HOH . D 4 HOH A 197 697 189 HOH HOH . D 4 HOH A 198 698 119 HOH HOH . D 4 HOH A 199 699 124 HOH HOH . D 4 HOH A 200 700 177 HOH HOH . D 4 HOH A 201 701 56 HOH HOH . D 4 HOH A 202 702 166 HOH HOH . D 4 HOH A 203 703 173 HOH HOH . D 4 HOH A 204 704 264 HOH HOH . D 4 HOH A 205 705 122 HOH HOH . D 4 HOH A 206 706 161 HOH HOH . D 4 HOH A 207 707 179 HOH HOH . D 4 HOH A 208 708 125 HOH HOH . D 4 HOH A 209 709 213 HOH HOH . D 4 HOH A 210 710 243 HOH HOH . D 4 HOH A 211 711 186 HOH HOH . D 4 HOH A 212 712 185 HOH HOH . D 4 HOH A 213 713 180 HOH HOH . D 4 HOH A 214 714 145 HOH HOH . D 4 HOH A 215 715 79 HOH HOH . D 4 HOH A 216 716 207 HOH HOH . D 4 HOH A 217 717 126 HOH HOH . D 4 HOH A 218 718 230 HOH HOH . D 4 HOH A 219 719 235 HOH HOH . D 4 HOH A 220 720 223 HOH HOH . D 4 HOH A 221 721 74 HOH HOH . D 4 HOH A 222 722 174 HOH HOH . D 4 HOH A 223 723 250 HOH HOH . D 4 HOH A 224 724 232 HOH HOH . D 4 HOH A 225 725 216 HOH HOH . D 4 HOH A 226 726 157 HOH HOH . D 4 HOH A 227 727 171 HOH HOH . D 4 HOH A 228 728 233 HOH HOH . D 4 HOH A 229 729 170 HOH HOH . D 4 HOH A 230 730 175 HOH HOH . D 4 HOH A 231 731 229 HOH HOH . D 4 HOH A 232 732 156 HOH HOH . D 4 HOH A 233 733 231 HOH HOH . D 4 HOH A 234 734 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 P72 . . . C 3 14.58 1.47 19.598 0.84 32.17 ? N1 P72 402 A 1 HETATM 2 C C2 P72 . . . C 3 13.254 3.798 19.36 0.84 25.57 ? C2 P72 402 A 1 HETATM 3 C C3 P72 . . . C 3 12.535 4.935 19.038 0.84 25.89 ? C3 P72 402 A 1 HETATM 4 C C4 P72 . . . C 3 13.164 6.173 19.022 0.84 27.3 ? C4 P72 402 A 1 HETATM 5 C C6 P72 . . . C 3 15.227 5.123 19.663 0.84 25.43 ? C6 P72 402 A 1 HETATM 6 N N P72 . . . C 3 16.431 2.456 20.377 0.84 24.21 ? N P72 402 A 1 HETATM 7 C C P72 . . . C 3 15.267 2.575 19.901 0.84 27.6 ? C P72 402 A 1 HETATM 8 O O P72 . . . C 3 12.437 7.282 18.687 0.84 28.99 ? O P72 402 A 1 HETATM 9 C C1 P72 . . . C 3 14.607 3.872 19.663 0.84 26.49 ? C1 P72 402 A 1 HETATM 10 C C5 P72 . . . C 3 14.514 6.267 19.341 0.84 25.83 ? C5 P72 402 A 1 # _model_server_stats.io_time_ms 160 _model_server_stats.parse_time_ms 170 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #