data_6YPT
#
_model_server_result.job_id            UC4zct_ufJX586PyEpvZYg 
_model_server_result.datetime_utc      '2025-08-30 18:59:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ypt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    6YPT 
#
_exptl.entry_id    6YPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              117.146 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'METHYL 4-AMINOBUTANOATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.37 
_cell.angle_gamma         90 
_cell.entry_id            6YPT 
_cell.length_a            37.93 
_cell.length_b            51.86 
_cell.length_c            125.25 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1 
C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 64 A CYS 783 1_555 E CB GVE . A GVE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? 
covale ? covale2 E N GVE . A GVE 901 1_555 B C GLY 85 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C SG CYS 64 C CYS 783 1_555 F CB GVE . C GVE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? 
covale ? covale4 F N GVE . C GVE 901 1_555 D C GLY 85 D GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C5 H11 N O2' 
_chem_comp.formula_weight    117.146 
_chem_comp.id                GVE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'METHYL 4-AMINOBUTANOATE' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C1 GVE sing 129 n n 
N H GVE sing 130 n n 
N H2 GVE sing 131 n n 
C1 CB GVE sing 132 n n 
C1 HA1 GVE sing 133 n n 
C1 HA2 GVE sing 134 n n 
CB CG GVE sing 135 n n 
CB HB1 GVE sing 136 n n 
CB HB2 GVE sing 137 n n 
CG C GVE sing 138 n n 
CG HG1 GVE sing 139 n n 
CG HG2 GVE sing 140 n n 
C OXT GVE sing 141 n n 
C O GVE doub 142 n n 
OXT CH3 GVE sing 143 n n 
CH3 HH31 GVE sing 144 n n 
CH3 HH32 GVE sing 145 n n 
CH3 HH33 GVE sing 146 n n 
#
_atom_sites.entry_id                     6YPT 
_atom_sites.fract_transf_matrix[1][1]    0.026364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003879 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GVE A 1 901 76 GVE GVE . 
F 3 GVE C 1 901 76 GVE GVE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GVE . . . F 3 -15.572 -18.873 -23.102 1 226.66 ? N GVE 901 C 1 
HETATM 2 C C1 GVE . . . F 3 -16.789 -19.649 -22.976 1 236.69 ? C1 GVE 901 C 1 
HETATM 3 C CB GVE . . . F 3 -16.558 -21.085 -23.433 1 236.3 ? CB GVE 901 C 1 
HETATM 4 C CG GVE . . . F 3 -16.25 -21.164 -24.925 1 232.09 ? CG GVE 901 C 1 
HETATM 5 C C GVE . . . F 3 -17.014 -22.323 -25.523 1 233.75 ? C GVE 901 C 1 
HETATM 6 O OXT GVE . . . F 3 -16.561 -22.926 -26.639 1 239.44 ? OXT GVE 901 C 1 
HETATM 7 O O GVE . . . F 3 -18.018 -22.727 -24.986 1 232.14 ? O GVE 901 C 1 
HETATM 8 C CH3 GVE . . . F 3 -17.126 -24.196 -26.962 1 239.63 ? CH3 GVE 901 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           298 
_model_server_stats.create_model_time_ms    102 
_model_server_stats.query_time_ms           1025 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#