data_6YQ8 # _model_server_result.job_id n7M87tAqyKfvNAKKv9UOpQ _model_server_result.datetime_utc '2024-11-15 01:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 6YQ8 # _exptl.entry_id 6YQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YQ8 _cell.length_a 153.514 _cell.length_b 153.514 _cell.length_c 39.358 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B SG CYS 82 B CYS 82 1_555 I CAC CYC . B CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale5 B SG CYS 153 B CYS 153 1_555 J CAC CYC . B CYC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 224 n n C1 C2 GOL sing 225 n n C1 H11 GOL sing 226 n n C1 H12 GOL sing 227 n n O1 HO1 GOL sing 228 n n C2 O2 GOL sing 229 n n C2 C3 GOL sing 230 n n C2 H2 GOL sing 231 n n O2 HO2 GOL sing 232 n n C3 O3 GOL sing 233 n n C3 H31 GOL sing 234 n n C3 H32 GOL sing 235 n n O3 HO3 GOL sing 236 n n # _atom_sites.entry_id 6YQ8 _atom_sites.fract_transf_matrix[1][1] 0.006514 _atom_sites.fract_transf_matrix[1][2] 0.003761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 489 CYC CYC . D 4 GOL A 1 202 501 GOL GOL . E 4 GOL A 1 203 601 GOL GOL . F 5 EDO A 1 204 701 EDO EDO . G 6 PGE A 1 205 801 PGE PGE . H 6 PGE A 1 206 1101 PGE PGE . I 3 CYC B 1 201 500 CYC CYC . J 3 CYC B 1 202 501 CYC CYC . K 4 GOL B 1 203 701 GOL GOL . L 5 EDO B 1 204 801 EDO EDO . M 5 EDO B 1 205 901 EDO EDO . N 5 EDO B 1 206 1001 EDO EDO . O 6 PGE B 1 207 1201 PGE PGE . P 5 EDO B 1 208 1301 EDO EDO . Q 6 PGE B 1 209 1401 PGE PGE . R 5 EDO B 1 210 1501 EDO EDO . S 5 EDO B 1 211 1601 EDO EDO . T 7 HOH A 1 301 98 HOH HOH . T 7 HOH A 2 302 245 HOH HOH . T 7 HOH A 3 303 254 HOH HOH . T 7 HOH A 4 304 134 HOH HOH . T 7 HOH A 5 305 193 HOH HOH . T 7 HOH A 6 306 196 HOH HOH . T 7 HOH A 7 307 61 HOH HOH . T 7 HOH A 8 308 231 HOH HOH . T 7 HOH A 9 309 223 HOH HOH . T 7 HOH A 10 310 205 HOH HOH . T 7 HOH A 11 311 101 HOH HOH . T 7 HOH A 12 312 81 HOH HOH . T 7 HOH A 13 313 211 HOH HOH . T 7 HOH A 14 314 90 HOH HOH . T 7 HOH A 15 315 143 HOH HOH . T 7 HOH A 16 316 107 HOH HOH . T 7 HOH A 17 317 145 HOH HOH . T 7 HOH A 18 318 110 HOH HOH . T 7 HOH A 19 319 9 HOH HOH . T 7 HOH A 20 320 122 HOH HOH . T 7 HOH A 21 321 198 HOH HOH . T 7 HOH A 22 322 79 HOH HOH . T 7 HOH A 23 323 21 HOH HOH . T 7 HOH A 24 324 54 HOH HOH . T 7 HOH A 25 325 41 HOH HOH . T 7 HOH A 26 326 230 HOH HOH . T 7 HOH A 27 327 130 HOH HOH . T 7 HOH A 28 328 187 HOH HOH . T 7 HOH A 29 329 111 HOH HOH . T 7 HOH A 30 330 105 HOH HOH . T 7 HOH A 31 331 118 HOH HOH . T 7 HOH A 32 332 47 HOH HOH . T 7 HOH A 33 333 239 HOH HOH . T 7 HOH A 34 334 75 HOH HOH . T 7 HOH A 35 335 20 HOH HOH . T 7 HOH A 36 336 235 HOH HOH . T 7 HOH A 37 337 37 HOH HOH . T 7 HOH A 38 338 133 HOH HOH . T 7 HOH A 39 339 244 HOH HOH . T 7 HOH A 40 340 242 HOH HOH . T 7 HOH A 41 341 123 HOH HOH . T 7 HOH A 42 342 102 HOH HOH . T 7 HOH A 43 343 248 HOH HOH . T 7 HOH A 44 344 85 HOH HOH . T 7 HOH A 45 345 92 HOH HOH . T 7 HOH A 46 346 129 HOH HOH . T 7 HOH A 47 347 251 HOH HOH . T 7 HOH A 48 348 229 HOH HOH . T 7 HOH A 49 349 48 HOH HOH . T 7 HOH A 50 350 204 HOH HOH . T 7 HOH A 51 351 237 HOH HOH . T 7 HOH A 52 352 39 HOH HOH . T 7 HOH A 53 353 108 HOH HOH . T 7 HOH A 54 354 106 HOH HOH . T 7 HOH A 55 355 15 HOH HOH . T 7 HOH A 56 356 203 HOH HOH . T 7 HOH A 57 357 151 HOH HOH . T 7 HOH A 58 358 121 HOH HOH . T 7 HOH A 59 359 97 HOH HOH . T 7 HOH A 60 360 160 HOH HOH . T 7 HOH A 61 361 188 HOH HOH . T 7 HOH A 62 362 181 HOH HOH . T 7 HOH A 63 363 96 HOH HOH . T 7 HOH A 64 364 115 HOH HOH . T 7 HOH A 65 365 114 HOH HOH . T 7 HOH A 66 366 212 HOH HOH . T 7 HOH A 67 367 169 HOH HOH . T 7 HOH A 68 368 201 HOH HOH . T 7 HOH A 69 369 152 HOH HOH . T 7 HOH A 70 370 202 HOH HOH . T 7 HOH A 71 371 190 HOH HOH . T 7 HOH A 72 372 232 HOH HOH . T 7 HOH A 73 373 153 HOH HOH . T 7 HOH A 74 374 217 HOH HOH . T 7 HOH A 75 375 199 HOH HOH . T 7 HOH A 76 376 208 HOH HOH . T 7 HOH A 77 377 159 HOH HOH . T 7 HOH A 78 378 155 HOH HOH . U 7 HOH B 1 301 215 HOH HOH . U 7 HOH B 2 302 176 HOH HOH . U 7 HOH B 3 303 128 HOH HOH . U 7 HOH B 4 304 53 HOH HOH . U 7 HOH B 5 305 127 HOH HOH . U 7 HOH B 6 306 164 HOH HOH . U 7 HOH B 7 307 150 HOH HOH . U 7 HOH B 8 308 246 HOH HOH . U 7 HOH B 9 309 182 HOH HOH . U 7 HOH B 10 310 179 HOH HOH . U 7 HOH B 11 311 93 HOH HOH . U 7 HOH B 12 312 184 HOH HOH . U 7 HOH B 13 313 17 HOH HOH . U 7 HOH B 14 314 140 HOH HOH . U 7 HOH B 15 315 238 HOH HOH . U 7 HOH B 16 316 192 HOH HOH . U 7 HOH B 17 317 14 HOH HOH . U 7 HOH B 18 318 233 HOH HOH . U 7 HOH B 19 319 178 HOH HOH . U 7 HOH B 20 320 46 HOH HOH . U 7 HOH B 21 321 227 HOH HOH . U 7 HOH B 22 322 241 HOH HOH . U 7 HOH B 23 323 216 HOH HOH . U 7 HOH B 24 324 163 HOH HOH . U 7 HOH B 25 325 206 HOH HOH . U 7 HOH B 26 326 89 HOH HOH . U 7 HOH B 27 327 185 HOH HOH . U 7 HOH B 28 328 73 HOH HOH . U 7 HOH B 29 329 186 HOH HOH . U 7 HOH B 30 330 136 HOH HOH . U 7 HOH B 31 331 28 HOH HOH . U 7 HOH B 32 332 60 HOH HOH . U 7 HOH B 33 333 65 HOH HOH . U 7 HOH B 34 334 36 HOH HOH . U 7 HOH B 35 335 6 HOH HOH . U 7 HOH B 36 336 42 HOH HOH . U 7 HOH B 37 337 24 HOH HOH . U 7 HOH B 38 338 67 HOH HOH . U 7 HOH B 39 339 8 HOH HOH . U 7 HOH B 40 340 2 HOH HOH . U 7 HOH B 41 341 35 HOH HOH . U 7 HOH B 42 342 18 HOH HOH . U 7 HOH B 43 343 22 HOH HOH . U 7 HOH B 44 344 1 HOH HOH . U 7 HOH B 45 345 113 HOH HOH . U 7 HOH B 46 346 44 HOH HOH . U 7 HOH B 47 347 87 HOH HOH . U 7 HOH B 48 348 131 HOH HOH . U 7 HOH B 49 349 80 HOH HOH . U 7 HOH B 50 350 214 HOH HOH . U 7 HOH B 51 351 13 HOH HOH . U 7 HOH B 52 352 62 HOH HOH . U 7 HOH B 53 353 109 HOH HOH . U 7 HOH B 54 354 125 HOH HOH . U 7 HOH B 55 355 177 HOH HOH . U 7 HOH B 56 356 94 HOH HOH . U 7 HOH B 57 357 77 HOH HOH . U 7 HOH B 58 358 219 HOH HOH . U 7 HOH B 59 359 210 HOH HOH . U 7 HOH B 60 360 180 HOH HOH . U 7 HOH B 61 361 3 HOH HOH . U 7 HOH B 62 362 30 HOH HOH . U 7 HOH B 63 363 174 HOH HOH . U 7 HOH B 64 364 7 HOH HOH . U 7 HOH B 65 365 240 HOH HOH . U 7 HOH B 66 366 57 HOH HOH . U 7 HOH B 67 367 12 HOH HOH . U 7 HOH B 68 368 38 HOH HOH . U 7 HOH B 69 369 26 HOH HOH . U 7 HOH B 70 370 23 HOH HOH . U 7 HOH B 71 371 58 HOH HOH . U 7 HOH B 72 372 95 HOH HOH . U 7 HOH B 73 373 59 HOH HOH . U 7 HOH B 74 374 119 HOH HOH . U 7 HOH B 75 375 63 HOH HOH . U 7 HOH B 76 376 228 HOH HOH . U 7 HOH B 77 377 200 HOH HOH . U 7 HOH B 78 378 157 HOH HOH . U 7 HOH B 79 379 234 HOH HOH . U 7 HOH B 80 380 11 HOH HOH . U 7 HOH B 81 381 27 HOH HOH . U 7 HOH B 82 382 99 HOH HOH . U 7 HOH B 83 383 72 HOH HOH . U 7 HOH B 84 384 195 HOH HOH . U 7 HOH B 85 385 86 HOH HOH . U 7 HOH B 86 386 91 HOH HOH . U 7 HOH B 87 387 45 HOH HOH . U 7 HOH B 88 388 194 HOH HOH . U 7 HOH B 89 389 116 HOH HOH . U 7 HOH B 90 390 76 HOH HOH . U 7 HOH B 91 391 156 HOH HOH . U 7 HOH B 92 392 84 HOH HOH . U 7 HOH B 93 393 103 HOH HOH . U 7 HOH B 94 394 221 HOH HOH . U 7 HOH B 95 395 100 HOH HOH . U 7 HOH B 96 396 226 HOH HOH . U 7 HOH B 97 397 51 HOH HOH . U 7 HOH B 98 398 74 HOH HOH . U 7 HOH B 99 399 4 HOH HOH . U 7 HOH B 100 400 197 HOH HOH . U 7 HOH B 101 401 104 HOH HOH . U 7 HOH B 102 402 82 HOH HOH . U 7 HOH B 103 403 124 HOH HOH . U 7 HOH B 104 404 50 HOH HOH . U 7 HOH B 105 405 220 HOH HOH . U 7 HOH B 106 406 144 HOH HOH . U 7 HOH B 107 407 34 HOH HOH . U 7 HOH B 108 408 56 HOH HOH . U 7 HOH B 109 409 213 HOH HOH . U 7 HOH B 110 410 88 HOH HOH . U 7 HOH B 111 411 138 HOH HOH . U 7 HOH B 112 412 162 HOH HOH . U 7 HOH B 113 413 247 HOH HOH . U 7 HOH B 114 414 250 HOH HOH . U 7 HOH B 115 415 225 HOH HOH . U 7 HOH B 116 416 142 HOH HOH . U 7 HOH B 117 417 120 HOH HOH . U 7 HOH B 118 418 252 HOH HOH . U 7 HOH B 119 419 161 HOH HOH . U 7 HOH B 120 420 83 HOH HOH . U 7 HOH B 121 421 168 HOH HOH . U 7 HOH B 122 422 222 HOH HOH . U 7 HOH B 123 423 166 HOH HOH . U 7 HOH B 124 424 224 HOH HOH . U 7 HOH B 125 425 243 HOH HOH . U 7 HOH B 126 426 218 HOH HOH . U 7 HOH B 127 427 236 HOH HOH . U 7 HOH B 128 428 154 HOH HOH . U 7 HOH B 129 429 139 HOH HOH . U 7 HOH B 130 430 257 HOH HOH . U 7 HOH B 131 431 165 HOH HOH . U 7 HOH B 132 432 149 HOH HOH . U 7 HOH B 133 433 141 HOH HOH . U 7 HOH B 134 434 207 HOH HOH . U 7 HOH B 135 435 33 HOH HOH . U 7 HOH B 136 436 167 HOH HOH . U 7 HOH B 137 437 189 HOH HOH . U 7 HOH B 138 438 148 HOH HOH . U 7 HOH B 139 439 255 HOH HOH . U 7 HOH B 140 440 253 HOH HOH . U 7 HOH B 141 441 249 HOH HOH . U 7 HOH B 142 442 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 41.246 -72.598 16.093 1 94.09 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . K 4 41.17 -73.001 14.759 1 95.3 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . K 4 41.197 -71.043 16.184 1 89.41 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . K 4 41.049 -70.401 14.971 1 82.36 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . K 4 42.513 -70.597 16.873 1 92.15 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . K 4 42.533 -71.185 18.128 1 92.73 ? O3 GOL 203 B 1 HETATM 7 H H11 GOL . . . K 4 42.063 -72.904 16.518 1 112.98 ? H11 GOL 203 B 1 HETATM 8 H H12 GOL . . . K 4 40.519 -72.959 16.623 1 112.98 ? H12 GOL 203 B 1 HETATM 9 H HO1 GOL . . . K 4 41.587 -73.74 14.706 1 114.42 ? HO1 GOL 203 B 1 HETATM 10 H H2 GOL . . . K 4 40.413 -70.813 16.707 1 107.36 ? H2 GOL 203 B 1 HETATM 11 H HO2 GOL . . . K 4 41.6 -69.758 14.94 1 98.9 ? HO2 GOL 203 B 1 HETATM 12 H H31 GOL . . . K 4 43.262 -70.857 16.315 1 110.65 ? H31 GOL 203 B 1 HETATM 13 H H32 GOL . . . K 4 42.539 -69.628 16.902 1 110.65 ? H32 GOL 203 B 1 HETATM 14 H HO3 GOL . . . K 4 43.357 -71.315 18.317 1 111.35 ? HO3 GOL 203 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #