data_6YQN # _model_server_result.job_id lSIe2oD5dHKQCe7BjiAsyA _model_server_result.datetime_utc '2024-11-13 05:10:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6YQN # _exptl.entry_id 6YQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 610.128 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{N}-(2-aminophenyl)-4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]t rideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]benzamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YQN _cell.length_a 37.254 _cell.length_b 44.338 _cell.length_c 78.256 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H28 Cl N7 O2 S' _chem_comp.formula_weight 610.128 _chem_comp.id P8T _chem_comp.mon_nstd_flag . _chem_comp.name '~{N}-(2-aminophenyl)-4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]t rideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]benzamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TW9 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C23 P8T sing 246 n n C24 C23 P8T doub 247 n y C24 C25 P8T sing 248 n y C23 C22 P8T sing 249 n y C25 C20 P8T doub 250 n y N2 C5 P8T sing 251 n n C22 C21 P8T doub 252 n y O C5 P8T doub 253 n n C5 C4 P8T sing 254 n n C20 C21 P8T sing 255 n y C20 C19 P8T sing 256 n n N5 C19 P8T doub 257 n n N5 C3 P8T sing 258 n n C19 C26 P8T sing 259 n n C4 C3 P8T sing 260 n n C3 C2 P8T sing 261 n n C28 C27 P8T sing 262 n n C26 C27 P8T sing 263 n y C26 C31 P8T doub 264 n y C2 N1 P8T doub 265 n y C2 N6 P8T sing 266 n y C27 C29 P8T doub 267 n y N1 N P8T sing 268 n y N6 C31 P8T sing 269 n n N6 C1 P8T sing 270 n y C31 S P8T sing 271 n y N C1 P8T doub 272 n y C29 C30 P8T sing 273 n n C29 S P8T sing 274 n y C1 C P8T sing 275 n n C4 H1 P8T sing 276 n n C4 H2 P8T sing 277 n n N2 H3 P8T sing 278 n n C22 H5 P8T sing 279 n n C21 H6 P8T sing 280 n n C24 H7 P8T sing 281 n n C25 H8 P8T sing 282 n n C30 H9 P8T sing 283 n n C30 H10 P8T sing 284 n n C30 H11 P8T sing 285 n n C28 H12 P8T sing 286 n n C28 H13 P8T sing 287 n n C28 H14 P8T sing 288 n n C H15 P8T sing 289 n n C H16 P8T sing 290 n n C H17 P8T sing 291 n n C3 H18 P8T sing 292 n n N2 C6 P8T sing 293 n n C6 C7 P8T sing 294 n y C7 C8 P8T doub 295 n y C8 C9 P8T sing 296 n y C9 C10 P8T doub 297 n y C10 C11 P8T sing 298 n y C11 C6 P8T doub 299 n y C9 C12 P8T sing 300 n n C12 N3 P8T sing 301 n n C12 O1 P8T doub 302 n n C13 C14 P8T sing 303 n y C14 C15 P8T doub 304 n y C15 C16 P8T sing 305 n y C16 C17 P8T doub 306 n y C17 C18 P8T sing 307 n y C18 C13 P8T doub 308 n y N3 C18 P8T sing 309 n n C13 N4 P8T sing 310 n n C7 H4 P8T sing 311 n n C8 H19 P8T sing 312 n n C10 H20 P8T sing 313 n n C11 H21 P8T sing 314 n n N3 H22 P8T sing 315 n n C14 H23 P8T sing 316 n n C15 H24 P8T sing 317 n n C16 H25 P8T sing 318 n n C17 H26 P8T sing 319 n n N4 H27 P8T sing 320 n n N4 H28 P8T sing 321 n n # _atom_sites.entry_id 6YQN _atom_sites.fract_transf_matrix[1][1] 0.026843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 3 P8T A 1 203 1 P8T XXX . E 4 HOH A 1 301 75 HOH HOH . E 4 HOH A 2 302 185 HOH HOH . E 4 HOH A 3 303 95 HOH HOH . E 4 HOH A 4 304 178 HOH HOH . E 4 HOH A 5 305 76 HOH HOH . E 4 HOH A 6 306 105 HOH HOH . E 4 HOH A 7 307 4 HOH HOH . E 4 HOH A 8 308 79 HOH HOH . E 4 HOH A 9 309 184 HOH HOH . E 4 HOH A 10 310 176 HOH HOH . E 4 HOH A 11 311 174 HOH HOH . E 4 HOH A 12 312 88 HOH HOH . E 4 HOH A 13 313 112 HOH HOH . E 4 HOH A 14 314 40 HOH HOH . E 4 HOH A 15 315 162 HOH HOH . E 4 HOH A 16 316 67 HOH HOH . E 4 HOH A 17 317 24 HOH HOH . E 4 HOH A 18 318 43 HOH HOH . E 4 HOH A 19 319 144 HOH HOH . E 4 HOH A 20 320 64 HOH HOH . E 4 HOH A 21 321 84 HOH HOH . E 4 HOH A 22 322 60 HOH HOH . E 4 HOH A 23 323 41 HOH HOH . E 4 HOH A 24 324 86 HOH HOH . E 4 HOH A 25 325 46 HOH HOH . E 4 HOH A 26 326 70 HOH HOH . E 4 HOH A 27 327 19 HOH HOH . E 4 HOH A 28 328 6 HOH HOH . E 4 HOH A 29 329 59 HOH HOH . E 4 HOH A 30 330 47 HOH HOH . E 4 HOH A 31 331 180 HOH HOH . E 4 HOH A 32 332 80 HOH HOH . E 4 HOH A 33 333 108 HOH HOH . E 4 HOH A 34 334 169 HOH HOH . E 4 HOH A 35 335 26 HOH HOH . E 4 HOH A 36 336 12 HOH HOH . E 4 HOH A 37 337 32 HOH HOH . E 4 HOH A 38 338 164 HOH HOH . E 4 HOH A 39 339 133 HOH HOH . E 4 HOH A 40 340 55 HOH HOH . E 4 HOH A 41 341 31 HOH HOH . E 4 HOH A 42 342 20 HOH HOH . E 4 HOH A 43 343 33 HOH HOH . E 4 HOH A 44 344 23 HOH HOH . E 4 HOH A 45 345 69 HOH HOH . E 4 HOH A 46 346 21 HOH HOH . E 4 HOH A 47 347 90 HOH HOH . E 4 HOH A 48 348 121 HOH HOH . E 4 HOH A 49 349 3 HOH HOH . E 4 HOH A 50 350 2 HOH HOH . E 4 HOH A 51 351 37 HOH HOH . E 4 HOH A 52 352 39 HOH HOH . E 4 HOH A 53 353 173 HOH HOH . E 4 HOH A 54 354 25 HOH HOH . E 4 HOH A 55 355 78 HOH HOH . E 4 HOH A 56 356 48 HOH HOH . E 4 HOH A 57 357 159 HOH HOH . E 4 HOH A 58 358 182 HOH HOH . E 4 HOH A 59 359 28 HOH HOH . E 4 HOH A 60 360 82 HOH HOH . E 4 HOH A 61 361 5 HOH HOH . E 4 HOH A 62 362 91 HOH HOH . E 4 HOH A 63 363 116 HOH HOH . E 4 HOH A 64 364 167 HOH HOH . E 4 HOH A 65 365 117 HOH HOH . E 4 HOH A 66 366 93 HOH HOH . E 4 HOH A 67 367 38 HOH HOH . E 4 HOH A 68 368 44 HOH HOH . E 4 HOH A 69 369 61 HOH HOH . E 4 HOH A 70 370 140 HOH HOH . E 4 HOH A 71 371 158 HOH HOH . E 4 HOH A 72 372 56 HOH HOH . E 4 HOH A 73 373 126 HOH HOH . E 4 HOH A 74 374 57 HOH HOH . E 4 HOH A 75 375 7 HOH HOH . E 4 HOH A 76 376 74 HOH HOH . E 4 HOH A 77 377 186 HOH HOH . E 4 HOH A 78 378 89 HOH HOH . E 4 HOH A 79 379 13 HOH HOH . E 4 HOH A 80 380 150 HOH HOH . E 4 HOH A 81 381 49 HOH HOH . E 4 HOH A 82 382 10 HOH HOH . E 4 HOH A 83 383 14 HOH HOH . E 4 HOH A 84 384 16 HOH HOH . E 4 HOH A 85 385 62 HOH HOH . E 4 HOH A 86 386 104 HOH HOH . E 4 HOH A 87 387 81 HOH HOH . E 4 HOH A 88 388 52 HOH HOH . E 4 HOH A 89 389 8 HOH HOH . E 4 HOH A 90 390 30 HOH HOH . E 4 HOH A 91 391 98 HOH HOH . E 4 HOH A 92 392 17 HOH HOH . E 4 HOH A 93 393 35 HOH HOH . E 4 HOH A 94 394 94 HOH HOH . E 4 HOH A 95 395 118 HOH HOH . E 4 HOH A 96 396 34 HOH HOH . E 4 HOH A 97 397 11 HOH HOH . E 4 HOH A 98 398 71 HOH HOH . E 4 HOH A 99 399 114 HOH HOH . E 4 HOH A 100 400 103 HOH HOH . E 4 HOH A 101 401 29 HOH HOH . E 4 HOH A 102 402 9 HOH HOH . E 4 HOH A 103 403 42 HOH HOH . E 4 HOH A 104 404 171 HOH HOH . E 4 HOH A 105 405 183 HOH HOH . E 4 HOH A 106 406 109 HOH HOH . E 4 HOH A 107 407 155 HOH HOH . E 4 HOH A 108 408 145 HOH HOH . E 4 HOH A 109 409 172 HOH HOH . E 4 HOH A 110 410 161 HOH HOH . E 4 HOH A 111 411 135 HOH HOH . E 4 HOH A 112 412 177 HOH HOH . E 4 HOH A 113 413 87 HOH HOH . E 4 HOH A 114 414 130 HOH HOH . E 4 HOH A 115 415 147 HOH HOH . E 4 HOH A 116 416 110 HOH HOH . E 4 HOH A 117 417 128 HOH HOH . E 4 HOH A 118 418 85 HOH HOH . E 4 HOH A 119 419 138 HOH HOH . E 4 HOH A 120 420 146 HOH HOH . E 4 HOH A 121 421 50 HOH HOH . E 4 HOH A 122 422 120 HOH HOH . E 4 HOH A 123 423 51 HOH HOH . E 4 HOH A 124 424 27 HOH HOH . E 4 HOH A 125 425 65 HOH HOH . E 4 HOH A 126 426 96 HOH HOH . E 4 HOH A 127 427 165 HOH HOH . E 4 HOH A 128 428 134 HOH HOH . E 4 HOH A 129 429 132 HOH HOH . E 4 HOH A 130 430 73 HOH HOH . E 4 HOH A 131 431 179 HOH HOH . E 4 HOH A 132 432 97 HOH HOH . E 4 HOH A 133 433 131 HOH HOH . E 4 HOH A 134 434 72 HOH HOH . E 4 HOH A 135 435 63 HOH HOH . E 4 HOH A 136 436 115 HOH HOH . E 4 HOH A 137 437 77 HOH HOH . E 4 HOH A 138 438 92 HOH HOH . E 4 HOH A 139 439 99 HOH HOH . E 4 HOH A 140 440 139 HOH HOH . E 4 HOH A 141 441 160 HOH HOH . E 4 HOH A 142 442 101 HOH HOH . E 4 HOH A 143 443 111 HOH HOH . E 4 HOH A 144 444 148 HOH HOH . E 4 HOH A 145 445 152 HOH HOH . E 4 HOH A 146 446 127 HOH HOH . E 4 HOH A 147 447 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 P8T . . . D 3 32.807 14.757 -2.476 1 23.24 ? C4 P8T 203 A 1 HETATM 2 C C5 P8T . . . D 3 32.538 13.943 -3.721 1 25.86 ? C5 P8T 203 A 1 HETATM 3 N N1 P8T . . . D 3 32.859 17.016 -0.653 1 18.34 ? N1 P8T 203 A 1 HETATM 4 N N2 P8T . . . D 3 33.253 14.321 -4.803 1 27.27 ? N2 P8T 203 A 1 HETATM 5 CL CL P8T . . . D 3 25.881 18.115 -6.88 1 23.09 ? CL P8T 203 A 1 HETATM 6 C C23 P8T . . . D 3 26.884 17.473 -5.616 1 21.4 ? C23 P8T 203 A 1 HETATM 7 C C22 P8T . . . D 3 26.616 17.811 -4.31 1 21.05 ? C22 P8T 203 A 1 HETATM 8 C C21 P8T . . . D 3 27.41 17.296 -3.304 1 20.93 ? C21 P8T 203 A 1 HETATM 9 C C24 P8T . . . D 3 27.924 16.632 -5.94 1 21.49 ? C24 P8T 203 A 1 HETATM 10 C C25 P8T . . . D 3 28.716 16.121 -4.927 1 20.96 ? C25 P8T 203 A 1 HETATM 11 C C20 P8T . . . D 3 28.472 16.449 -3.597 1 20.16 ? C20 P8T 203 A 1 HETATM 12 C C19 P8T . . . D 3 29.365 15.951 -2.529 1 18.81 ? C19 P8T 203 A 1 HETATM 13 C C26 P8T . . . D 3 28.795 15.823 -1.123 1 16.53 ? C26 P8T 203 A 1 HETATM 14 C C31 P8T . . . D 3 29.469 16.284 -0.015 1 15.54 ? C31 P8T 203 A 1 HETATM 15 S S P8T . . . D 3 28.556 16.088 1.439 1 14.16 ? S P8T 203 A 1 HETATM 16 C C29 P8T . . . D 3 27.24 15.367 0.556 1 15.09 ? C29 P8T 203 A 1 HETATM 17 C C30 P8T . . . D 3 25.998 14.975 1.299 1 15.83 ? C30 P8T 203 A 1 HETATM 18 C C27 P8T . . . D 3 27.505 15.268 -0.774 1 15.64 ? C27 P8T 203 A 1 HETATM 19 C C28 P8T . . . D 3 26.576 14.573 -1.724 1 16.57 ? C28 P8T 203 A 1 HETATM 20 N N6 P8T . . . D 3 30.754 16.832 -0.047 1 17.21 ? N6 P8T 203 A 1 HETATM 21 C C2 P8T . . . D 3 31.754 16.332 -0.856 1 18.58 ? C2 P8T 203 A 1 HETATM 22 N N P8T . . . D 3 32.587 17.993 0.291 1 18.87 ? N P8T 203 A 1 HETATM 23 C C1 P8T . . . D 3 31.334 17.877 0.646 1 17.59 ? C1 P8T 203 A 1 HETATM 24 C C P8T . . . D 3 30.633 18.739 1.629 1 18.47 ? C P8T 203 A 1 HETATM 25 N N5 P8T . . . D 3 30.576 15.703 -2.868 1 19.55 ? N5 P8T 203 A 1 HETATM 26 C C3 P8T . . . D 3 31.492 15.207 -1.831 1 20.41 ? C3 P8T 203 A 1 HETATM 27 O O P8T . . . D 3 31.722 13.025 -3.725 1 26.42 ? O P8T 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #