data_6YQO # _model_server_result.job_id -8P5I4f67AakvrpBr2NLkQ _model_server_result.datetime_utc '2024-11-23 06:50:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6YQO # _exptl.entry_id 6YQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YQO _cell.length_a 37.166 _cell.length_b 44.295 _cell.length_c 78.581 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YQO _atom_sites.fract_transf_matrix[1][1] 0.026906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 2 EDO EDO . C 2 EDO A 1 202 1 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 3 P8Q A 1 204 1 P8Q XXX . F 4 HOH A 1 301 176 HOH HOH . F 4 HOH A 2 302 72 HOH HOH . F 4 HOH A 3 303 151 HOH HOH . F 4 HOH A 4 304 178 HOH HOH . F 4 HOH A 5 305 133 HOH HOH . F 4 HOH A 6 306 73 HOH HOH . F 4 HOH A 7 307 109 HOH HOH . F 4 HOH A 8 308 180 HOH HOH . F 4 HOH A 9 309 98 HOH HOH . F 4 HOH A 10 310 127 HOH HOH . F 4 HOH A 11 311 10 HOH HOH . F 4 HOH A 12 312 49 HOH HOH . F 4 HOH A 13 313 4 HOH HOH . F 4 HOH A 14 314 34 HOH HOH . F 4 HOH A 15 315 45 HOH HOH . F 4 HOH A 16 316 47 HOH HOH . F 4 HOH A 17 317 25 HOH HOH . F 4 HOH A 18 318 77 HOH HOH . F 4 HOH A 19 319 76 HOH HOH . F 4 HOH A 20 320 38 HOH HOH . F 4 HOH A 21 321 108 HOH HOH . F 4 HOH A 22 322 16 HOH HOH . F 4 HOH A 23 323 8 HOH HOH . F 4 HOH A 24 324 54 HOH HOH . F 4 HOH A 25 325 170 HOH HOH . F 4 HOH A 26 326 64 HOH HOH . F 4 HOH A 27 327 26 HOH HOH . F 4 HOH A 28 328 48 HOH HOH . F 4 HOH A 29 329 93 HOH HOH . F 4 HOH A 30 330 87 HOH HOH . F 4 HOH A 31 331 80 HOH HOH . F 4 HOH A 32 332 122 HOH HOH . F 4 HOH A 33 333 169 HOH HOH . F 4 HOH A 34 334 3 HOH HOH . F 4 HOH A 35 335 58 HOH HOH . F 4 HOH A 36 336 52 HOH HOH . F 4 HOH A 37 337 140 HOH HOH . F 4 HOH A 38 338 132 HOH HOH . F 4 HOH A 39 339 33 HOH HOH . F 4 HOH A 40 340 53 HOH HOH . F 4 HOH A 41 341 30 HOH HOH . F 4 HOH A 42 342 161 HOH HOH . F 4 HOH A 43 343 19 HOH HOH . F 4 HOH A 44 344 5 HOH HOH . F 4 HOH A 45 345 164 HOH HOH . F 4 HOH A 46 346 28 HOH HOH . F 4 HOH A 47 347 50 HOH HOH . F 4 HOH A 48 348 11 HOH HOH . F 4 HOH A 49 349 174 HOH HOH . F 4 HOH A 50 350 148 HOH HOH . F 4 HOH A 51 351 111 HOH HOH . F 4 HOH A 52 352 89 HOH HOH . F 4 HOH A 53 353 81 HOH HOH . F 4 HOH A 54 354 13 HOH HOH . F 4 HOH A 55 355 51 HOH HOH . F 4 HOH A 56 356 22 HOH HOH . F 4 HOH A 57 357 41 HOH HOH . F 4 HOH A 58 358 82 HOH HOH . F 4 HOH A 59 359 92 HOH HOH . F 4 HOH A 60 360 173 HOH HOH . F 4 HOH A 61 361 75 HOH HOH . F 4 HOH A 62 362 39 HOH HOH . F 4 HOH A 63 363 21 HOH HOH . F 4 HOH A 64 364 44 HOH HOH . F 4 HOH A 65 365 143 HOH HOH . F 4 HOH A 66 366 6 HOH HOH . F 4 HOH A 67 367 17 HOH HOH . F 4 HOH A 68 368 56 HOH HOH . F 4 HOH A 69 369 55 HOH HOH . F 4 HOH A 70 370 14 HOH HOH . F 4 HOH A 71 371 43 HOH HOH . F 4 HOH A 72 372 177 HOH HOH . F 4 HOH A 73 373 40 HOH HOH . F 4 HOH A 74 374 182 HOH HOH . F 4 HOH A 75 375 42 HOH HOH . F 4 HOH A 76 376 186 HOH HOH . F 4 HOH A 77 377 125 HOH HOH . F 4 HOH A 78 378 29 HOH HOH . F 4 HOH A 79 379 62 HOH HOH . F 4 HOH A 80 380 104 HOH HOH . F 4 HOH A 81 381 134 HOH HOH . F 4 HOH A 82 382 66 HOH HOH . F 4 HOH A 83 383 91 HOH HOH . F 4 HOH A 84 384 71 HOH HOH . F 4 HOH A 85 385 12 HOH HOH . F 4 HOH A 86 386 107 HOH HOH . F 4 HOH A 87 387 32 HOH HOH . F 4 HOH A 88 388 97 HOH HOH . F 4 HOH A 89 389 20 HOH HOH . F 4 HOH A 90 390 158 HOH HOH . F 4 HOH A 91 391 9 HOH HOH . F 4 HOH A 92 392 159 HOH HOH . F 4 HOH A 93 393 162 HOH HOH . F 4 HOH A 94 394 96 HOH HOH . F 4 HOH A 95 395 24 HOH HOH . F 4 HOH A 96 396 69 HOH HOH . F 4 HOH A 97 397 165 HOH HOH . F 4 HOH A 98 398 15 HOH HOH . F 4 HOH A 99 399 130 HOH HOH . F 4 HOH A 100 400 35 HOH HOH . F 4 HOH A 101 401 100 HOH HOH . F 4 HOH A 102 402 95 HOH HOH . F 4 HOH A 103 403 59 HOH HOH . F 4 HOH A 104 404 157 HOH HOH . F 4 HOH A 105 405 61 HOH HOH . F 4 HOH A 106 406 94 HOH HOH . F 4 HOH A 107 407 7 HOH HOH . F 4 HOH A 108 408 187 HOH HOH . F 4 HOH A 109 409 74 HOH HOH . F 4 HOH A 110 410 141 HOH HOH . F 4 HOH A 111 411 160 HOH HOH . F 4 HOH A 112 412 168 HOH HOH . F 4 HOH A 113 413 185 HOH HOH . F 4 HOH A 114 414 63 HOH HOH . F 4 HOH A 115 415 83 HOH HOH . F 4 HOH A 116 416 149 HOH HOH . F 4 HOH A 117 417 135 HOH HOH . F 4 HOH A 118 418 105 HOH HOH . F 4 HOH A 119 419 175 HOH HOH . F 4 HOH A 120 420 116 HOH HOH . F 4 HOH A 121 421 113 HOH HOH . F 4 HOH A 122 422 153 HOH HOH . F 4 HOH A 123 423 84 HOH HOH . F 4 HOH A 124 424 128 HOH HOH . F 4 HOH A 125 425 118 HOH HOH . F 4 HOH A 126 426 85 HOH HOH . F 4 HOH A 127 427 131 HOH HOH . F 4 HOH A 128 428 163 HOH HOH . F 4 HOH A 129 429 57 HOH HOH . F 4 HOH A 130 430 23 HOH HOH . F 4 HOH A 131 431 65 HOH HOH . F 4 HOH A 132 432 166 HOH HOH . F 4 HOH A 133 433 136 HOH HOH . F 4 HOH A 134 434 79 HOH HOH . F 4 HOH A 135 435 90 HOH HOH . F 4 HOH A 136 436 129 HOH HOH . F 4 HOH A 137 437 99 HOH HOH . F 4 HOH A 138 438 120 HOH HOH . F 4 HOH A 139 439 138 HOH HOH . F 4 HOH A 140 440 86 HOH HOH . F 4 HOH A 141 441 67 HOH HOH . F 4 HOH A 142 442 78 HOH HOH . F 4 HOH A 143 443 101 HOH HOH . F 4 HOH A 144 444 184 HOH HOH . F 4 HOH A 145 445 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 25.615 32.494 19.528 1 15.3 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . C 2 26.159 32.899 20.789 1 15.29 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . C 2 24.581 33.51 19.052 1 15.83 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . C 2 23.401 33.453 19.866 1 16.6 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #