data_6YQO
#
_model_server_result.job_id            -wPTRYsvimcKysanNABajQ 
_model_server_result.datetime_utc      '2024-10-19 03:56:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    6YQO 
#
_exptl.entry_id    6YQO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              662.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (S)-N1-(4-(2-(4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl)acetamido)phenyl)-N8-hydroxyoctanediamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YQO 
_cell.length_a            37.166 
_cell.length_b            44.295 
_cell.length_c            78.581 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YQO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H36 Cl N7 O4 S' 
_chem_comp.formula_weight    662.201 
_chem_comp.id                P8Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (S)-N1-(4-(2-(4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl)acetamido)phenyl)-N8-hydroxyoctanediamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     TW12 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C9 P8Q sing 246 n n 
C9 C8 P8Q doub 247 n y 
C9 C18 P8Q sing 248 n y 
C8 C7 P8Q sing 249 n y 
C18 C19 P8Q doub 250 n y 
CL C24 P8Q sing 251 n n 
C7 C6 P8Q doub 252 n y 
C23 C24 P8Q doub 253 n y 
C23 C22 P8Q sing 254 n y 
C19 C6 P8Q sing 255 n y 
C6 N2 P8Q sing 256 n n 
C24 C25 P8Q sing 257 n y 
C22 C21 P8Q doub 258 n y 
N2 C5 P8Q sing 259 n n 
C25 C26 P8Q doub 260 n y 
C21 C26 P8Q sing 261 n y 
C21 C20 P8Q sing 262 n n 
C5 O P8Q doub 263 n n 
C5 C4 P8Q sing 264 n n 
N5 C20 P8Q doub 265 n n 
N5 C3 P8Q sing 266 n n 
C20 C27 P8Q sing 267 n n 
C4 C3 P8Q sing 268 n n 
C3 C2 P8Q sing 269 n n 
C29 C28 P8Q sing 270 n n 
C27 C28 P8Q sing 271 n y 
C27 C32 P8Q doub 272 n y 
C2 N1 P8Q doub 273 n y 
C2 N6 P8Q sing 274 n y 
C28 C30 P8Q doub 275 n y 
N1 N P8Q sing 276 n y 
N6 C32 P8Q sing 277 n n 
N6 C1 P8Q sing 278 n y 
C32 S P8Q sing 279 n y 
N C1 P8Q doub 280 n y 
C30 C31 P8Q sing 281 n n 
C30 S P8Q sing 282 n y 
C1 C P8Q sing 283 n n 
C4 H1 P8Q sing 284 n n 
C4 H2 P8Q sing 285 n n 
C7 H3 P8Q sing 286 n n 
C8 H4 P8Q sing 287 n n 
N2 H5 P8Q sing 288 n n 
N3 H6 P8Q sing 289 n n 
C23 H8 P8Q sing 290 n n 
C22 H9 P8Q sing 291 n n 
C25 H10 P8Q sing 292 n n 
C26 H11 P8Q sing 293 n n 
C31 H12 P8Q sing 294 n n 
C31 H13 P8Q sing 295 n n 
C31 H14 P8Q sing 296 n n 
C29 H15 P8Q sing 297 n n 
C29 H16 P8Q sing 298 n n 
C29 H17 P8Q sing 299 n n 
C H18 P8Q sing 300 n n 
C H19 P8Q sing 301 n n 
C H20 P8Q sing 302 n n 
C3 H21 P8Q sing 303 n n 
C19 H22 P8Q sing 304 n n 
C18 H23 P8Q sing 305 n n 
N3 C10 P8Q sing 306 n n 
C10 O1 P8Q doub 307 n n 
C10 C12 P8Q sing 308 n n 
C12 C11 P8Q sing 309 n n 
C11 C13 P8Q sing 310 n n 
C13 C14 P8Q sing 311 n n 
C14 C15 P8Q sing 312 n n 
C15 C16 P8Q sing 313 n n 
C16 C17 P8Q sing 314 n n 
C17 N4 P8Q sing 315 n n 
C17 O2 P8Q doub 316 n n 
C12 H7 P8Q sing 317 n n 
C12 H24 P8Q sing 318 n n 
C11 H25 P8Q sing 319 n n 
C11 H26 P8Q sing 320 n n 
C13 H27 P8Q sing 321 n n 
C13 H28 P8Q sing 322 n n 
C14 H29 P8Q sing 323 n n 
C14 H30 P8Q sing 324 n n 
C15 H31 P8Q sing 325 n n 
C15 H32 P8Q sing 326 n n 
C16 H33 P8Q sing 327 n n 
C16 H34 P8Q sing 328 n n 
N4 H35 P8Q sing 329 n n 
N4 O3 P8Q sing 330 n n 
O3 H36 P8Q sing 331 n n 
#
_atom_sites.entry_id                     6YQO 
_atom_sites.fract_transf_matrix[1][1]    0.026906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022576 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 2 EDO EDO . 
C 2 EDO A 1 202 1 EDO EDO . 
D 2 EDO A 1 203 3 EDO EDO . 
E 3 P8Q A 1 204 1 P8Q XXX . 
F 4 HOH A 1 301 176 HOH HOH . 
F 4 HOH A 2 302 72 HOH HOH . 
F 4 HOH A 3 303 151 HOH HOH . 
F 4 HOH A 4 304 178 HOH HOH . 
F 4 HOH A 5 305 133 HOH HOH . 
F 4 HOH A 6 306 73 HOH HOH . 
F 4 HOH A 7 307 109 HOH HOH . 
F 4 HOH A 8 308 180 HOH HOH . 
F 4 HOH A 9 309 98 HOH HOH . 
F 4 HOH A 10 310 127 HOH HOH . 
F 4 HOH A 11 311 10 HOH HOH . 
F 4 HOH A 12 312 49 HOH HOH . 
F 4 HOH A 13 313 4 HOH HOH . 
F 4 HOH A 14 314 34 HOH HOH . 
F 4 HOH A 15 315 45 HOH HOH . 
F 4 HOH A 16 316 47 HOH HOH . 
F 4 HOH A 17 317 25 HOH HOH . 
F 4 HOH A 18 318 77 HOH HOH . 
F 4 HOH A 19 319 76 HOH HOH . 
F 4 HOH A 20 320 38 HOH HOH . 
F 4 HOH A 21 321 108 HOH HOH . 
F 4 HOH A 22 322 16 HOH HOH . 
F 4 HOH A 23 323 8 HOH HOH . 
F 4 HOH A 24 324 54 HOH HOH . 
F 4 HOH A 25 325 170 HOH HOH . 
F 4 HOH A 26 326 64 HOH HOH . 
F 4 HOH A 27 327 26 HOH HOH . 
F 4 HOH A 28 328 48 HOH HOH . 
F 4 HOH A 29 329 93 HOH HOH . 
F 4 HOH A 30 330 87 HOH HOH . 
F 4 HOH A 31 331 80 HOH HOH . 
F 4 HOH A 32 332 122 HOH HOH . 
F 4 HOH A 33 333 169 HOH HOH . 
F 4 HOH A 34 334 3 HOH HOH . 
F 4 HOH A 35 335 58 HOH HOH . 
F 4 HOH A 36 336 52 HOH HOH . 
F 4 HOH A 37 337 140 HOH HOH . 
F 4 HOH A 38 338 132 HOH HOH . 
F 4 HOH A 39 339 33 HOH HOH . 
F 4 HOH A 40 340 53 HOH HOH . 
F 4 HOH A 41 341 30 HOH HOH . 
F 4 HOH A 42 342 161 HOH HOH . 
F 4 HOH A 43 343 19 HOH HOH . 
F 4 HOH A 44 344 5 HOH HOH . 
F 4 HOH A 45 345 164 HOH HOH . 
F 4 HOH A 46 346 28 HOH HOH . 
F 4 HOH A 47 347 50 HOH HOH . 
F 4 HOH A 48 348 11 HOH HOH . 
F 4 HOH A 49 349 174 HOH HOH . 
F 4 HOH A 50 350 148 HOH HOH . 
F 4 HOH A 51 351 111 HOH HOH . 
F 4 HOH A 52 352 89 HOH HOH . 
F 4 HOH A 53 353 81 HOH HOH . 
F 4 HOH A 54 354 13 HOH HOH . 
F 4 HOH A 55 355 51 HOH HOH . 
F 4 HOH A 56 356 22 HOH HOH . 
F 4 HOH A 57 357 41 HOH HOH . 
F 4 HOH A 58 358 82 HOH HOH . 
F 4 HOH A 59 359 92 HOH HOH . 
F 4 HOH A 60 360 173 HOH HOH . 
F 4 HOH A 61 361 75 HOH HOH . 
F 4 HOH A 62 362 39 HOH HOH . 
F 4 HOH A 63 363 21 HOH HOH . 
F 4 HOH A 64 364 44 HOH HOH . 
F 4 HOH A 65 365 143 HOH HOH . 
F 4 HOH A 66 366 6 HOH HOH . 
F 4 HOH A 67 367 17 HOH HOH . 
F 4 HOH A 68 368 56 HOH HOH . 
F 4 HOH A 69 369 55 HOH HOH . 
F 4 HOH A 70 370 14 HOH HOH . 
F 4 HOH A 71 371 43 HOH HOH . 
F 4 HOH A 72 372 177 HOH HOH . 
F 4 HOH A 73 373 40 HOH HOH . 
F 4 HOH A 74 374 182 HOH HOH . 
F 4 HOH A 75 375 42 HOH HOH . 
F 4 HOH A 76 376 186 HOH HOH . 
F 4 HOH A 77 377 125 HOH HOH . 
F 4 HOH A 78 378 29 HOH HOH . 
F 4 HOH A 79 379 62 HOH HOH . 
F 4 HOH A 80 380 104 HOH HOH . 
F 4 HOH A 81 381 134 HOH HOH . 
F 4 HOH A 82 382 66 HOH HOH . 
F 4 HOH A 83 383 91 HOH HOH . 
F 4 HOH A 84 384 71 HOH HOH . 
F 4 HOH A 85 385 12 HOH HOH . 
F 4 HOH A 86 386 107 HOH HOH . 
F 4 HOH A 87 387 32 HOH HOH . 
F 4 HOH A 88 388 97 HOH HOH . 
F 4 HOH A 89 389 20 HOH HOH . 
F 4 HOH A 90 390 158 HOH HOH . 
F 4 HOH A 91 391 9 HOH HOH . 
F 4 HOH A 92 392 159 HOH HOH . 
F 4 HOH A 93 393 162 HOH HOH . 
F 4 HOH A 94 394 96 HOH HOH . 
F 4 HOH A 95 395 24 HOH HOH . 
F 4 HOH A 96 396 69 HOH HOH . 
F 4 HOH A 97 397 165 HOH HOH . 
F 4 HOH A 98 398 15 HOH HOH . 
F 4 HOH A 99 399 130 HOH HOH . 
F 4 HOH A 100 400 35 HOH HOH . 
F 4 HOH A 101 401 100 HOH HOH . 
F 4 HOH A 102 402 95 HOH HOH . 
F 4 HOH A 103 403 59 HOH HOH . 
F 4 HOH A 104 404 157 HOH HOH . 
F 4 HOH A 105 405 61 HOH HOH . 
F 4 HOH A 106 406 94 HOH HOH . 
F 4 HOH A 107 407 7 HOH HOH . 
F 4 HOH A 108 408 187 HOH HOH . 
F 4 HOH A 109 409 74 HOH HOH . 
F 4 HOH A 110 410 141 HOH HOH . 
F 4 HOH A 111 411 160 HOH HOH . 
F 4 HOH A 112 412 168 HOH HOH . 
F 4 HOH A 113 413 185 HOH HOH . 
F 4 HOH A 114 414 63 HOH HOH . 
F 4 HOH A 115 415 83 HOH HOH . 
F 4 HOH A 116 416 149 HOH HOH . 
F 4 HOH A 117 417 135 HOH HOH . 
F 4 HOH A 118 418 105 HOH HOH . 
F 4 HOH A 119 419 175 HOH HOH . 
F 4 HOH A 120 420 116 HOH HOH . 
F 4 HOH A 121 421 113 HOH HOH . 
F 4 HOH A 122 422 153 HOH HOH . 
F 4 HOH A 123 423 84 HOH HOH . 
F 4 HOH A 124 424 128 HOH HOH . 
F 4 HOH A 125 425 118 HOH HOH . 
F 4 HOH A 126 426 85 HOH HOH . 
F 4 HOH A 127 427 131 HOH HOH . 
F 4 HOH A 128 428 163 HOH HOH . 
F 4 HOH A 129 429 57 HOH HOH . 
F 4 HOH A 130 430 23 HOH HOH . 
F 4 HOH A 131 431 65 HOH HOH . 
F 4 HOH A 132 432 166 HOH HOH . 
F 4 HOH A 133 433 136 HOH HOH . 
F 4 HOH A 134 434 79 HOH HOH . 
F 4 HOH A 135 435 90 HOH HOH . 
F 4 HOH A 136 436 129 HOH HOH . 
F 4 HOH A 137 437 99 HOH HOH . 
F 4 HOH A 138 438 120 HOH HOH . 
F 4 HOH A 139 439 138 HOH HOH . 
F 4 HOH A 140 440 86 HOH HOH . 
F 4 HOH A 141 441 67 HOH HOH . 
F 4 HOH A 142 442 78 HOH HOH . 
F 4 HOH A 143 443 101 HOH HOH . 
F 4 HOH A 144 444 184 HOH HOH . 
F 4 HOH A 145 445 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 P8Q . . . E 3 32.733 14.693 -2.533 1 12.65 ? C4 P8Q 204 A 1 
HETATM 2 C C5 P8Q . . . E 3 32.414 13.638 -3.583 1 15.92 ? C5 P8Q 204 A 1 
HETATM 3 C C6 P8Q . . . E 3 33.193 12.789 -5.799 1 25.05 ? C6 P8Q 204 A 1 
HETATM 4 N N1 P8Q . . . E 3 32.803 16.923 -0.629 1 10.92 ? N1 P8Q 204 A 1 
HETATM 5 C C7 P8Q . . . E 3 34.103 12.993 -6.828 1 26.9 ? C7 P8Q 204 A 1 
HETATM 6 C C8 P8Q . . . E 3 34.054 12.214 -7.971 1 27.97 ? C8 P8Q 204 A 1 
HETATM 7 N N2 P8Q . . . E 3 33.244 13.631 -4.656 1 20.89 ? N2 P8Q 204 A 1 
HETATM 8 C C9 P8Q . . . E 3 33.097 11.216 -8.102 1 28.39 ? C9 P8Q 204 A 1 
HETATM 9 N N3 P8Q . . . E 3 33.045 10.417 -9.267 1 29.23 ? N3 P8Q 204 A 1 
HETATM 10 CL CL P8Q . . . E 3 25.705 18.035 -6.834 1 12.11 ? CL P8Q 204 A 1 
HETATM 11 C C24 P8Q . . . E 3 26.74 17.394 -5.591 1 11.25 ? C24 P8Q 204 A 1 
HETATM 12 C C23 P8Q . . . E 3 27.805 16.594 -5.94 1 11.27 ? C23 P8Q 204 A 1 
HETATM 13 C C22 P8Q . . . E 3 28.626 16.091 -4.945 1 11.41 ? C22 P8Q 204 A 1 
HETATM 14 C C25 P8Q . . . E 3 26.475 17.696 -4.277 1 10.37 ? C25 P8Q 204 A 1 
HETATM 15 C C26 P8Q . . . E 3 27.298 17.19 -3.287 1 10.23 ? C26 P8Q 204 A 1 
HETATM 16 C C21 P8Q . . . E 3 28.384 16.383 -3.605 1 10.52 ? C21 P8Q 204 A 1 
HETATM 17 C C20 P8Q . . . E 3 29.289 15.875 -2.548 1 10.63 ? C20 P8Q 204 A 1 
HETATM 18 C C27 P8Q . . . E 3 28.733 15.714 -1.16 1 10.23 ? C27 P8Q 204 A 1 
HETATM 19 C C32 P8Q . . . E 3 29.399 16.188 -0.051 1 10.15 ? C32 P8Q 204 A 1 
HETATM 20 S S P8Q . . . E 3 28.481 15.981 1.389 1 10.37 ? S P8Q 204 A 1 
HETATM 21 C C30 P8Q . . . E 3 27.188 15.233 0.516 1 11.07 ? C30 P8Q 204 A 1 
HETATM 22 C C31 P8Q . . . E 3 25.956 14.813 1.263 1 12.3 ? C31 P8Q 204 A 1 
HETATM 23 C C28 P8Q . . . E 3 27.456 15.131 -0.812 1 11.06 ? C28 P8Q 204 A 1 
HETATM 24 C C29 P8Q . . . E 3 26.554 14.401 -1.76 1 11.65 ? C29 P8Q 204 A 1 
HETATM 25 N N6 P8Q . . . E 3 30.686 16.732 -0.055 1 10.31 ? N6 P8Q 204 A 1 
HETATM 26 C C2 P8Q . . . E 3 31.699 16.249 -0.86 1 10.24 ? C2 P8Q 204 A 1 
HETATM 27 N N P8Q . . . E 3 32.516 17.884 0.336 1 11.2 ? N P8Q 204 A 1 
HETATM 28 C C1 P8Q . . . E 3 31.256 17.763 0.668 1 10.89 ? C1 P8Q 204 A 1 
HETATM 29 C C P8Q . . . E 3 30.537 18.611 1.653 1 11.56 ? C P8Q 204 A 1 
HETATM 30 N N5 P8Q . . . E 3 30.509 15.664 -2.886 1 10.53 ? N5 P8Q 204 A 1 
HETATM 31 C C3 P8Q . . . E 3 31.431 15.151 -1.863 1 10.82 ? C3 P8Q 204 A 1 
HETATM 32 O O P8Q . . . E 3 31.464 12.872 -3.45 1 15.79 ? O P8Q 204 A 1 
HETATM 33 C C19 P8Q . . . E 3 32.236 11.788 -5.93 1 26.58 ? C19 P8Q 204 A 1 
HETATM 34 C C18 P8Q . . . E 3 32.189 11.009 -7.072 1 27.62 ? C18 P8Q 204 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           34 
#