data_6YQP # _model_server_result.job_id Kol_5TUXrqNL7kBy6cYIgA _model_server_result.datetime_utc '2024-11-16 14:52:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6YQP # _exptl.entry_id 6YQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.081 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(~{E})-3-[4-[[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6 ),4,7,10,12-pentaen-9-yl]ethanoylamino]methyl]phenyl]-~{N}-oxidanyl-prop-2-enamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YQP _cell.length_a 37.031 _cell.length_b 44.432 _cell.length_c 78.766 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H27 Cl N6 O3 S' _chem_comp.formula_weight 575.081 _chem_comp.id P8N _chem_comp.mon_nstd_flag . _chem_comp.name '(~{E})-3-[4-[[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6 ),4,7,10,12-pentaen-9-yl]ethanoylamino]methyl]phenyl]-~{N}-oxidanyl-prop-2-enamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TW22 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C13 P8N doub 246 n n O2 N3 P8N sing 247 n n C13 C12 P8N sing 248 n n C13 N3 P8N sing 249 n n C12 C11 P8N doub 250 e n C11 C10 P8N sing 251 n n C9 C10 P8N doub 252 n y C9 C8 P8N sing 253 n y C10 C14 P8N sing 254 n y C8 C7 P8N doub 255 n y CL C20 P8N sing 256 n n C14 C15 P8N doub 257 n y C7 C15 P8N sing 258 n y C7 C6 P8N sing 259 n n C19 C20 P8N doub 260 n y C19 C18 P8N sing 261 n y C6 N2 P8N sing 262 n n C20 C21 P8N sing 263 n y C18 C17 P8N doub 264 n y N2 C5 P8N sing 265 n n C21 C22 P8N doub 266 n y C17 C22 P8N sing 267 n y C17 C16 P8N sing 268 n n C5 O P8N doub 269 n n C5 C4 P8N sing 270 n n N4 C16 P8N doub 271 n n N4 C3 P8N sing 272 n n C4 C3 P8N sing 273 n n C16 C23 P8N sing 274 n n C3 C2 P8N sing 275 n n C25 C24 P8N sing 276 n n C23 C24 P8N sing 277 n y C23 C28 P8N doub 278 n y C2 N1 P8N doub 279 n y C2 N5 P8N sing 280 n y C24 C26 P8N doub 281 n y N1 N P8N sing 282 n y N5 C28 P8N sing 283 n n N5 C1 P8N sing 284 n y C28 S P8N sing 285 n y N C1 P8N doub 286 n y C26 C27 P8N sing 287 n n C26 S P8N sing 288 n y C1 C P8N sing 289 n n C4 H1 P8N sing 290 n n C4 H2 P8N sing 291 n n C6 H3 P8N sing 292 n n C6 H4 P8N sing 293 n n C8 H5 P8N sing 294 n n N2 H6 P8N sing 295 n n C9 H7 P8N sing 296 n n C11 H8 P8N sing 297 n n C12 H9 P8N sing 298 n n N3 H10 P8N sing 299 n n C14 H11 P8N sing 300 n n C15 H12 P8N sing 301 n n C19 H13 P8N sing 302 n n C18 H14 P8N sing 303 n n C21 H15 P8N sing 304 n n C22 H16 P8N sing 305 n n C27 H17 P8N sing 306 n n C27 H18 P8N sing 307 n n C27 H19 P8N sing 308 n n C25 H20 P8N sing 309 n n C25 H21 P8N sing 310 n n C25 H22 P8N sing 311 n n C H23 P8N sing 312 n n C H24 P8N sing 313 n n C H25 P8N sing 314 n n C3 H26 P8N sing 315 n n O2 H27 P8N sing 316 n n # _atom_sites.entry_id 6YQP _atom_sites.fract_transf_matrix[1][1] 0.027004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 3 P8N A 1 204 1 P8N XXX . F 4 HOH A 1 301 156 HOH HOH . F 4 HOH A 2 302 202 HOH HOH . F 4 HOH A 3 303 114 HOH HOH . F 4 HOH A 4 304 203 HOH HOH . F 4 HOH A 5 305 123 HOH HOH . F 4 HOH A 6 306 111 HOH HOH . F 4 HOH A 7 307 204 HOH HOH . F 4 HOH A 8 308 173 HOH HOH . F 4 HOH A 9 309 182 HOH HOH . F 4 HOH A 10 310 140 HOH HOH . F 4 HOH A 11 311 25 HOH HOH . F 4 HOH A 12 312 72 HOH HOH . F 4 HOH A 13 313 58 HOH HOH . F 4 HOH A 14 314 95 HOH HOH . F 4 HOH A 15 315 3 HOH HOH . F 4 HOH A 16 316 208 HOH HOH . F 4 HOH A 17 317 75 HOH HOH . F 4 HOH A 18 318 62 HOH HOH . F 4 HOH A 19 319 92 HOH HOH . F 4 HOH A 20 320 20 HOH HOH . F 4 HOH A 21 321 63 HOH HOH . F 4 HOH A 22 322 26 HOH HOH . F 4 HOH A 23 323 64 HOH HOH . F 4 HOH A 24 324 12 HOH HOH . F 4 HOH A 25 325 21 HOH HOH . F 4 HOH A 26 326 13 HOH HOH . F 4 HOH A 27 327 81 HOH HOH . F 4 HOH A 28 328 22 HOH HOH . F 4 HOH A 29 329 82 HOH HOH . F 4 HOH A 30 330 85 HOH HOH . F 4 HOH A 31 331 61 HOH HOH . F 4 HOH A 32 332 71 HOH HOH . F 4 HOH A 33 333 136 HOH HOH . F 4 HOH A 34 334 212 HOH HOH . F 4 HOH A 35 335 104 HOH HOH . F 4 HOH A 36 336 135 HOH HOH . F 4 HOH A 37 337 27 HOH HOH . F 4 HOH A 38 338 28 HOH HOH . F 4 HOH A 39 339 40 HOH HOH . F 4 HOH A 40 340 122 HOH HOH . F 4 HOH A 41 341 196 HOH HOH . F 4 HOH A 42 342 98 HOH HOH . F 4 HOH A 43 343 4 HOH HOH . F 4 HOH A 44 344 6 HOH HOH . F 4 HOH A 45 345 52 HOH HOH . F 4 HOH A 46 346 108 HOH HOH . F 4 HOH A 47 347 198 HOH HOH . F 4 HOH A 48 348 105 HOH HOH . F 4 HOH A 49 349 48 HOH HOH . F 4 HOH A 50 350 51 HOH HOH . F 4 HOH A 51 351 97 HOH HOH . F 4 HOH A 52 352 54 HOH HOH . F 4 HOH A 53 353 172 HOH HOH . F 4 HOH A 54 354 125 HOH HOH . F 4 HOH A 55 355 57 HOH HOH . F 4 HOH A 56 356 36 HOH HOH . F 4 HOH A 57 357 37 HOH HOH . F 4 HOH A 58 358 38 HOH HOH . F 4 HOH A 59 359 47 HOH HOH . F 4 HOH A 60 360 60 HOH HOH . F 4 HOH A 61 361 130 HOH HOH . F 4 HOH A 62 362 137 HOH HOH . F 4 HOH A 63 363 113 HOH HOH . F 4 HOH A 64 364 119 HOH HOH . F 4 HOH A 65 365 53 HOH HOH . F 4 HOH A 66 366 30 HOH HOH . F 4 HOH A 67 367 163 HOH HOH . F 4 HOH A 68 368 181 HOH HOH . F 4 HOH A 69 369 32 HOH HOH . F 4 HOH A 70 370 79 HOH HOH . F 4 HOH A 71 371 10 HOH HOH . F 4 HOH A 72 372 55 HOH HOH . F 4 HOH A 73 373 19 HOH HOH . F 4 HOH A 74 374 46 HOH HOH . F 4 HOH A 75 375 128 HOH HOH . F 4 HOH A 76 376 100 HOH HOH . F 4 HOH A 77 377 94 HOH HOH . F 4 HOH A 78 378 209 HOH HOH . F 4 HOH A 79 379 14 HOH HOH . F 4 HOH A 80 380 166 HOH HOH . F 4 HOH A 81 381 41 HOH HOH . F 4 HOH A 82 382 127 HOH HOH . F 4 HOH A 83 383 124 HOH HOH . F 4 HOH A 84 384 117 HOH HOH . F 4 HOH A 85 385 8 HOH HOH . F 4 HOH A 86 386 43 HOH HOH . F 4 HOH A 87 387 148 HOH HOH . F 4 HOH A 88 388 213 HOH HOH . F 4 HOH A 89 389 45 HOH HOH . F 4 HOH A 90 390 5 HOH HOH . F 4 HOH A 91 391 16 HOH HOH . F 4 HOH A 92 392 59 HOH HOH . F 4 HOH A 93 393 184 HOH HOH . F 4 HOH A 94 394 149 HOH HOH . F 4 HOH A 95 395 158 HOH HOH . F 4 HOH A 96 396 200 HOH HOH . F 4 HOH A 97 397 86 HOH HOH . F 4 HOH A 98 398 139 HOH HOH . F 4 HOH A 99 399 83 HOH HOH . F 4 HOH A 100 400 126 HOH HOH . F 4 HOH A 101 401 39 HOH HOH . F 4 HOH A 102 402 194 HOH HOH . F 4 HOH A 103 403 120 HOH HOH . F 4 HOH A 104 404 199 HOH HOH . F 4 HOH A 105 405 103 HOH HOH . F 4 HOH A 106 406 78 HOH HOH . F 4 HOH A 107 407 189 HOH HOH . F 4 HOH A 108 408 129 HOH HOH . F 4 HOH A 109 409 190 HOH HOH . F 4 HOH A 110 410 205 HOH HOH . F 4 HOH A 111 411 49 HOH HOH . F 4 HOH A 112 412 170 HOH HOH . F 4 HOH A 113 413 133 HOH HOH . F 4 HOH A 114 414 31 HOH HOH . F 4 HOH A 115 415 161 HOH HOH . F 4 HOH A 116 416 88 HOH HOH . F 4 HOH A 117 417 33 HOH HOH . F 4 HOH A 118 418 195 HOH HOH . F 4 HOH A 119 419 138 HOH HOH . F 4 HOH A 120 420 96 HOH HOH . F 4 HOH A 121 421 215 HOH HOH . F 4 HOH A 122 422 109 HOH HOH . F 4 HOH A 123 423 159 HOH HOH . F 4 HOH A 124 424 152 HOH HOH . F 4 HOH A 125 425 206 HOH HOH . F 4 HOH A 126 426 178 HOH HOH . F 4 HOH A 127 427 68 HOH HOH . F 4 HOH A 128 428 151 HOH HOH . F 4 HOH A 129 429 80 HOH HOH . F 4 HOH A 130 430 18 HOH HOH . F 4 HOH A 131 431 165 HOH HOH . F 4 HOH A 132 432 176 HOH HOH . F 4 HOH A 133 433 150 HOH HOH . F 4 HOH A 134 434 169 HOH HOH . F 4 HOH A 135 435 91 HOH HOH . F 4 HOH A 136 436 207 HOH HOH . F 4 HOH A 137 437 115 HOH HOH . F 4 HOH A 138 438 112 HOH HOH . F 4 HOH A 139 439 210 HOH HOH . F 4 HOH A 140 440 107 HOH HOH . F 4 HOH A 141 441 144 HOH HOH . F 4 HOH A 142 442 211 HOH HOH . F 4 HOH A 143 443 147 HOH HOH . F 4 HOH A 144 444 84 HOH HOH . F 4 HOH A 145 445 87 HOH HOH . F 4 HOH A 146 446 160 HOH HOH . F 4 HOH A 147 447 24 HOH HOH . F 4 HOH A 148 448 131 HOH HOH . F 4 HOH A 149 449 65 HOH HOH . F 4 HOH A 150 450 73 HOH HOH . F 4 HOH A 151 451 116 HOH HOH . F 4 HOH A 152 452 201 HOH HOH . F 4 HOH A 153 453 70 HOH HOH . F 4 HOH A 154 454 175 HOH HOH . F 4 HOH A 155 455 67 HOH HOH . F 4 HOH A 156 456 50 HOH HOH . F 4 HOH A 157 457 167 HOH HOH . F 4 HOH A 158 458 74 HOH HOH . F 4 HOH A 159 459 101 HOH HOH . F 4 HOH A 160 460 106 HOH HOH . F 4 HOH A 161 461 90 HOH HOH . F 4 HOH A 162 462 141 HOH HOH . F 4 HOH A 163 463 121 HOH HOH . F 4 HOH A 164 464 179 HOH HOH . F 4 HOH A 165 465 157 HOH HOH . F 4 HOH A 166 466 214 HOH HOH . F 4 HOH A 167 467 186 HOH HOH . F 4 HOH A 168 468 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 P8N . . . E 3 32.199 14.658 -2.599 1 10.73 ? C4 P8N 204 A 1 HETATM 2 C C5 P8N . . . E 3 31.764 13.507 -3.493 1 13.12 ? C5 P8N 204 A 1 HETATM 3 C C6 P8N . . . E 3 31.889 12.495 -5.713 1 20.22 ? C6 P8N 204 A 1 HETATM 4 N N1 P8N . . . E 3 32.367 16.958 -0.704 1 9.29 ? N1 P8N 204 A 1 HETATM 5 C C7 P8N . . . E 3 30.563 12.793 -6.374 1 23.21 ? C7 P8N 204 A 1 HETATM 6 C C8 P8N . . . E 3 30.412 13.873 -7.232 1 23.85 ? C8 P8N 204 A 1 HETATM 7 N N2 P8N . . . E 3 32.286 13.486 -4.72 1 16.93 ? N2 P8N 204 A 1 HETATM 8 C C9 P8N . . . E 3 29.185 14.164 -7.804 1 25.72 ? C9 P8N 204 A 1 HETATM 9 C C10 P8N . . . E 3 28.062 13.379 -7.537 1 26.99 ? C10 P8N 204 A 1 HETATM 10 C C11 P8N . . . E 3 26.731 13.681 -8.077 1 30.1 ? C11 P8N 204 A 1 HETATM 11 C C12 P8N . . . E 3 26.359 14.715 -8.823 1 32.87 ? C12 P8N 204 A 1 HETATM 12 N N3 P8N . . . E 3 24.136 13.927 -8.752 1 38.04 ? N3 P8N 204 A 1 HETATM 13 C C13 P8N . . . E 3 24.93 14.925 -9.145 1 35.97 ? C13 P8N 204 A 1 HETATM 14 C C14 P8N . . . E 3 28.231 12.276 -6.702 1 25.89 ? C14 P8N 204 A 1 HETATM 15 C C15 P8N . . . E 3 29.455 11.996 -6.123 1 25.05 ? C15 P8N 204 A 1 HETATM 16 N N4 P8N . . . E 3 30.021 15.746 -2.936 1 10.04 ? N4 P8N 204 A 1 HETATM 17 CL CL P8N . . . E 3 25.305 18.22 -6.891 1 12.76 ? CL P8N 204 A 1 HETATM 18 C C20 P8N . . . E 3 26.309 17.546 -5.636 1 11.28 ? C20 P8N 204 A 1 HETATM 19 C C19 P8N . . . E 3 27.38 16.756 -5.979 1 12.17 ? C19 P8N 204 A 1 HETATM 20 C C18 P8N . . . E 3 28.167 16.213 -4.98 1 10.99 ? C18 P8N 204 A 1 HETATM 21 C C21 P8N . . . E 3 26.003 17.803 -4.317 1 11.32 ? C21 P8N 204 A 1 HETATM 22 C C22 P8N . . . E 3 26.803 17.271 -3.323 1 10.18 ? C22 P8N 204 A 1 HETATM 23 C C17 P8N . . . E 3 27.898 16.473 -3.64 1 9.88 ? C17 P8N 204 A 1 HETATM 24 C C16 P8N . . . E 3 28.802 15.953 -2.593 1 9.71 ? C16 P8N 204 A 1 HETATM 25 C C23 P8N . . . E 3 28.257 15.796 -1.204 1 9.65 ? C23 P8N 204 A 1 HETATM 26 C C28 P8N . . . E 3 28.947 16.266 -0.108 1 9.53 ? C28 P8N 204 A 1 HETATM 27 S S P8N . . . E 3 28.065 16.049 1.35 1 9.75 ? S P8N 204 A 1 HETATM 28 C C26 P8N . . . E 3 26.753 15.304 0.507 1 10.25 ? C26 P8N 204 A 1 HETATM 29 C C27 P8N . . . E 3 25.538 14.887 1.284 1 12.13 ? C27 P8N 204 A 1 HETATM 30 C C24 P8N . . . E 3 26.987 15.21 -0.828 1 10.27 ? C24 P8N 204 A 1 HETATM 31 C C25 P8N . . . E 3 26.06 14.492 -1.764 1 12.32 ? C25 P8N 204 A 1 HETATM 32 N N5 P8N . . . E 3 30.248 16.802 -0.125 1 8.93 ? N5 P8N 204 A 1 HETATM 33 C C2 P8N . . . E 3 31.249 16.307 -0.937 1 8.94 ? C2 P8N 204 A 1 HETATM 34 N N P8N . . . E 3 32.103 17.908 0.283 1 9.54 ? N P8N 204 A 1 HETATM 35 C C1 P8N . . . E 3 30.84 17.811 0.612 1 10.06 ? C1 P8N 204 A 1 HETATM 36 C C P8N . . . E 3 30.139 18.663 1.606 1 10.03 ? C P8N 204 A 1 HETATM 37 C C3 P8N . . . E 3 30.936 15.205 -1.922 1 9.98 ? C3 P8N 204 A 1 HETATM 38 O O P8N . . . E 3 30.954 12.673 -3.101 1 12.62 ? O P8N 204 A 1 HETATM 39 O O1 P8N . . . E 3 24.516 15.909 -9.774 1 36.41 ? O1 P8N 204 A 1 HETATM 40 O O2 P8N . . . E 3 23.116 13.488 -9.592 1 37.4 ? O2 P8N 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #