data_6YQR # _model_server_result.job_id VZQY_ZzPDoOViXVUPjds5w _model_server_result.datetime_utc '2025-01-15 22:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6YQR # _exptl.entry_id 6YQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-dimethyl-5-[(2-phenylphenyl)methylamino]pyridazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.007 _cell.angle_beta 74.35 _cell.angle_gamma 74.205 _cell.entry_id 6YQR _cell.length_a 24.524 _cell.length_b 33.885 _cell.length_c 39.614 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N3 O' _chem_comp.formula_weight 305.374 _chem_comp.id P8W _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-dimethyl-5-[(2-phenylphenyl)methylamino]pyridazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Biphenyl-methylamino-dimethylpyridazinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C23 P8W doub 237 n y C25 C27 P8W sing 238 n y C23 C22 P8W sing 239 n y C27 C29 P8W doub 240 n y C22 C21 P8W sing 241 n n C22 C31 P8W doub 242 n y C29 C31 P8W sing 243 n y C19 C21 P8W doub 244 n y C19 C17 P8W sing 245 n y C21 C12 P8W sing 246 n y C17 C15 P8W doub 247 n y C12 C09 P8W sing 248 n n C12 C13 P8W doub 249 n y C09 N07 P8W sing 250 n n N07 C06 P8W sing 251 n n C15 C13 P8W sing 252 n y C01 C05 P8W sing 253 n n C06 C05 P8W doub 254 n n C06 C33 P8W sing 255 n n C05 C41 P8W sing 256 n n C33 N35 P8W doub 257 n n C41 O42 P8W doub 258 n n C41 N36 P8W sing 259 n n N35 N36 P8W sing 260 n n N36 C37 P8W sing 261 n n C13 H1 P8W sing 262 n n C15 H2 P8W sing 263 n n C17 H3 P8W sing 264 n n C01 H4 P8W sing 265 n n C01 H5 P8W sing 266 n n C01 H6 P8W sing 267 n n N07 H7 P8W sing 268 n n C09 H8 P8W sing 269 n n C09 H9 P8W sing 270 n n C19 H10 P8W sing 271 n n C23 H11 P8W sing 272 n n C25 H12 P8W sing 273 n n C27 H13 P8W sing 274 n n C29 H14 P8W sing 275 n n C31 H15 P8W sing 276 n n C33 H16 P8W sing 277 n n C37 H17 P8W sing 278 n n C37 H18 P8W sing 279 n n C37 H19 P8W sing 280 n n # _atom_sites.entry_id 6YQR _atom_sites.fract_transf_matrix[1][1] 0.040776 _atom_sites.fract_transf_matrix[1][2] -0.011535 _atom_sites.fract_transf_matrix[1][3] -0.008611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03067 _atom_sites.fract_transf_matrix[2][3] -0.008669 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P8W AAA 1 201 1 P8W LIG . C 3 HOH AAA 1 301 121 HOH HOH . C 3 HOH AAA 2 302 93 HOH HOH . C 3 HOH AAA 3 303 56 HOH HOH . C 3 HOH AAA 4 304 170 HOH HOH . C 3 HOH AAA 5 305 5 HOH HOH . C 3 HOH AAA 6 306 148 HOH HOH . C 3 HOH AAA 7 307 128 HOH HOH . C 3 HOH AAA 8 308 136 HOH HOH . C 3 HOH AAA 9 309 176 HOH HOH . C 3 HOH AAA 10 310 140 HOH HOH . C 3 HOH AAA 11 311 46 HOH HOH . C 3 HOH AAA 12 312 38 HOH HOH . C 3 HOH AAA 13 313 94 HOH HOH . C 3 HOH AAA 14 314 151 HOH HOH . C 3 HOH AAA 15 315 67 HOH HOH . C 3 HOH AAA 16 316 196 HOH HOH . C 3 HOH AAA 17 317 20 HOH HOH . C 3 HOH AAA 18 318 21 HOH HOH . C 3 HOH AAA 19 319 63 HOH HOH . C 3 HOH AAA 20 320 177 HOH HOH . C 3 HOH AAA 21 321 156 HOH HOH . C 3 HOH AAA 22 322 204 HOH HOH . C 3 HOH AAA 23 323 37 HOH HOH . C 3 HOH AAA 24 324 111 HOH HOH . C 3 HOH AAA 25 325 75 HOH HOH . C 3 HOH AAA 26 326 134 HOH HOH . C 3 HOH AAA 27 327 101 HOH HOH . C 3 HOH AAA 28 328 9 HOH HOH . C 3 HOH AAA 29 329 24 HOH HOH . C 3 HOH AAA 30 330 65 HOH HOH . C 3 HOH AAA 31 331 68 HOH HOH . C 3 HOH AAA 32 332 108 HOH HOH . C 3 HOH AAA 33 333 100 HOH HOH . C 3 HOH AAA 34 334 48 HOH HOH . C 3 HOH AAA 35 335 117 HOH HOH . C 3 HOH AAA 36 336 8 HOH HOH . C 3 HOH AAA 37 337 29 HOH HOH . C 3 HOH AAA 38 338 88 HOH HOH . C 3 HOH AAA 39 339 135 HOH HOH . C 3 HOH AAA 40 340 19 HOH HOH . C 3 HOH AAA 41 341 74 HOH HOH . C 3 HOH AAA 42 342 15 HOH HOH . C 3 HOH AAA 43 343 64 HOH HOH . C 3 HOH AAA 44 344 73 HOH HOH . C 3 HOH AAA 45 345 71 HOH HOH . C 3 HOH AAA 46 346 50 HOH HOH . C 3 HOH AAA 47 347 16 HOH HOH . C 3 HOH AAA 48 348 22 HOH HOH . C 3 HOH AAA 49 349 178 HOH HOH . C 3 HOH AAA 50 350 3 HOH HOH . C 3 HOH AAA 51 351 33 HOH HOH . C 3 HOH AAA 52 352 112 HOH HOH . C 3 HOH AAA 53 353 193 HOH HOH . C 3 HOH AAA 54 354 192 HOH HOH . C 3 HOH AAA 55 355 110 HOH HOH . C 3 HOH AAA 56 356 123 HOH HOH . C 3 HOH AAA 57 357 109 HOH HOH . C 3 HOH AAA 58 358 190 HOH HOH . C 3 HOH AAA 59 359 149 HOH HOH . C 3 HOH AAA 60 360 197 HOH HOH . C 3 HOH AAA 61 361 14 HOH HOH . C 3 HOH AAA 62 362 18 HOH HOH . C 3 HOH AAA 63 363 107 HOH HOH . C 3 HOH AAA 64 364 43 HOH HOH . C 3 HOH AAA 65 365 120 HOH HOH . C 3 HOH AAA 66 366 2 HOH HOH . C 3 HOH AAA 67 367 55 HOH HOH . C 3 HOH AAA 68 368 7 HOH HOH . C 3 HOH AAA 69 369 1 HOH HOH . C 3 HOH AAA 70 370 54 HOH HOH . C 3 HOH AAA 71 371 27 HOH HOH . C 3 HOH AAA 72 372 51 HOH HOH . C 3 HOH AAA 73 373 119 HOH HOH . C 3 HOH AAA 74 374 30 HOH HOH . C 3 HOH AAA 75 375 35 HOH HOH . C 3 HOH AAA 76 376 184 HOH HOH . C 3 HOH AAA 77 377 11 HOH HOH . C 3 HOH AAA 78 378 34 HOH HOH . C 3 HOH AAA 79 379 160 HOH HOH . C 3 HOH AAA 80 380 143 HOH HOH . C 3 HOH AAA 81 381 103 HOH HOH . C 3 HOH AAA 82 382 45 HOH HOH . C 3 HOH AAA 83 383 131 HOH HOH . C 3 HOH AAA 84 384 36 HOH HOH . C 3 HOH AAA 85 385 199 HOH HOH . C 3 HOH AAA 86 386 25 HOH HOH . C 3 HOH AAA 87 387 102 HOH HOH . C 3 HOH AAA 88 388 201 HOH HOH . C 3 HOH AAA 89 389 115 HOH HOH . C 3 HOH AAA 90 390 173 HOH HOH . C 3 HOH AAA 91 391 207 HOH HOH . C 3 HOH AAA 92 392 39 HOH HOH . C 3 HOH AAA 93 393 97 HOH HOH . C 3 HOH AAA 94 394 189 HOH HOH . C 3 HOH AAA 95 395 172 HOH HOH . C 3 HOH AAA 96 396 77 HOH HOH . C 3 HOH AAA 97 397 42 HOH HOH . C 3 HOH AAA 98 398 70 HOH HOH . C 3 HOH AAA 99 399 23 HOH HOH . C 3 HOH AAA 100 400 169 HOH HOH . C 3 HOH AAA 101 401 4 HOH HOH . C 3 HOH AAA 102 402 44 HOH HOH . C 3 HOH AAA 103 403 10 HOH HOH . C 3 HOH AAA 104 404 26 HOH HOH . C 3 HOH AAA 105 405 32 HOH HOH . C 3 HOH AAA 106 406 185 HOH HOH . C 3 HOH AAA 107 407 6 HOH HOH . C 3 HOH AAA 108 408 127 HOH HOH . C 3 HOH AAA 109 409 17 HOH HOH . C 3 HOH AAA 110 410 133 HOH HOH . C 3 HOH AAA 111 411 83 HOH HOH . C 3 HOH AAA 112 412 90 HOH HOH . C 3 HOH AAA 113 413 147 HOH HOH . C 3 HOH AAA 114 414 179 HOH HOH . C 3 HOH AAA 115 415 191 HOH HOH . C 3 HOH AAA 116 416 187 HOH HOH . C 3 HOH AAA 117 417 211 HOH HOH . C 3 HOH AAA 118 418 99 HOH HOH . C 3 HOH AAA 119 419 164 HOH HOH . C 3 HOH AAA 120 420 114 HOH HOH . C 3 HOH AAA 121 421 122 HOH HOH . C 3 HOH AAA 122 422 76 HOH HOH . C 3 HOH AAA 123 423 138 HOH HOH . C 3 HOH AAA 124 424 116 HOH HOH . C 3 HOH AAA 125 425 40 HOH HOH . C 3 HOH AAA 126 426 85 HOH HOH . C 3 HOH AAA 127 427 118 HOH HOH . C 3 HOH AAA 128 428 66 HOH HOH . C 3 HOH AAA 129 429 157 HOH HOH . C 3 HOH AAA 130 430 82 HOH HOH . C 3 HOH AAA 131 431 31 HOH HOH . C 3 HOH AAA 132 432 72 HOH HOH . C 3 HOH AAA 133 433 144 HOH HOH . C 3 HOH AAA 134 434 12 HOH HOH . C 3 HOH AAA 135 435 129 HOH HOH . C 3 HOH AAA 136 436 62 HOH HOH . C 3 HOH AAA 137 437 198 HOH HOH . C 3 HOH AAA 138 438 213 HOH HOH . C 3 HOH AAA 139 439 212 HOH HOH . C 3 HOH AAA 140 440 208 HOH HOH . C 3 HOH AAA 141 441 91 HOH HOH . C 3 HOH AAA 142 442 52 HOH HOH . C 3 HOH AAA 143 443 146 HOH HOH . C 3 HOH AAA 144 444 183 HOH HOH . C 3 HOH AAA 145 445 203 HOH HOH . C 3 HOH AAA 146 446 205 HOH HOH . C 3 HOH AAA 147 447 186 HOH HOH . C 3 HOH AAA 148 448 13 HOH HOH . C 3 HOH AAA 149 449 150 HOH HOH . C 3 HOH AAA 150 450 165 HOH HOH . C 3 HOH AAA 151 451 96 HOH HOH . C 3 HOH AAA 152 452 206 HOH HOH . C 3 HOH AAA 153 453 95 HOH HOH . C 3 HOH AAA 154 454 142 HOH HOH . C 3 HOH AAA 155 455 86 HOH HOH . C 3 HOH AAA 156 456 89 HOH HOH . C 3 HOH AAA 157 457 58 HOH HOH . C 3 HOH AAA 158 458 84 HOH HOH . C 3 HOH AAA 159 459 87 HOH HOH . C 3 HOH AAA 160 460 125 HOH HOH . C 3 HOH AAA 161 461 47 HOH HOH . C 3 HOH AAA 162 462 98 HOH HOH . C 3 HOH AAA 163 463 141 HOH HOH . C 3 HOH AAA 164 464 159 HOH HOH . C 3 HOH AAA 165 465 60 HOH HOH . C 3 HOH AAA 166 466 154 HOH HOH . C 3 HOH AAA 167 467 194 HOH HOH . C 3 HOH AAA 168 468 180 HOH HOH . C 3 HOH AAA 169 469 158 HOH HOH . C 3 HOH AAA 170 470 195 HOH HOH . C 3 HOH AAA 171 471 61 HOH HOH . C 3 HOH AAA 172 472 113 HOH HOH . C 3 HOH AAA 173 473 104 HOH HOH . C 3 HOH AAA 174 474 182 HOH HOH . C 3 HOH AAA 175 475 200 HOH HOH . C 3 HOH AAA 176 476 126 HOH HOH . C 3 HOH AAA 177 477 69 HOH HOH . C 3 HOH AAA 178 478 79 HOH HOH . C 3 HOH AAA 179 479 105 HOH HOH . C 3 HOH AAA 180 480 137 HOH HOH . C 3 HOH AAA 181 481 132 HOH HOH . C 3 HOH AAA 182 482 155 HOH HOH . C 3 HOH AAA 183 483 145 HOH HOH . C 3 HOH AAA 184 484 188 HOH HOH . C 3 HOH AAA 185 485 28 HOH HOH . C 3 HOH AAA 186 486 49 HOH HOH . C 3 HOH AAA 187 487 106 HOH HOH . C 3 HOH AAA 188 488 167 HOH HOH . C 3 HOH AAA 189 489 153 HOH HOH . C 3 HOH AAA 190 490 53 HOH HOH . C 3 HOH AAA 191 491 124 HOH HOH . C 3 HOH AAA 192 492 163 HOH HOH . C 3 HOH AAA 193 493 175 HOH HOH . C 3 HOH AAA 194 494 174 HOH HOH . C 3 HOH AAA 195 495 166 HOH HOH . C 3 HOH AAA 196 496 92 HOH HOH . C 3 HOH AAA 197 497 59 HOH HOH . C 3 HOH AAA 198 498 181 HOH HOH . C 3 HOH AAA 199 499 171 HOH HOH . C 3 HOH AAA 200 500 78 HOH HOH . C 3 HOH AAA 201 501 81 HOH HOH . C 3 HOH AAA 202 502 139 HOH HOH . C 3 HOH AAA 203 503 210 HOH HOH . C 3 HOH AAA 204 504 152 HOH HOH . C 3 HOH AAA 205 505 161 HOH HOH . C 3 HOH AAA 206 506 168 HOH HOH . C 3 HOH AAA 207 507 57 HOH HOH . C 3 HOH AAA 208 508 162 HOH HOH . C 3 HOH AAA 209 509 80 HOH HOH . C 3 HOH AAA 210 510 41 HOH HOH . C 3 HOH AAA 211 511 202 HOH HOH . C 3 HOH AAA 212 512 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 P8W . . . B 2 3.061 12.072 9.454 1 27.2 ? C13 P8W 201 AAA 1 HETATM 2 C C15 P8W . . . B 2 4.07 11.13 9.383 1 28.44 ? C15 P8W 201 AAA 1 HETATM 3 C C17 P8W . . . B 2 5.272 11.451 8.8 1 31.03 ? C17 P8W 201 AAA 1 HETATM 4 C C21 P8W . . . B 2 4.475 13.689 8.35 1 30.68 ? C21 P8W 201 AAA 1 HETATM 5 C C22 P8W . . . B 2 4.704 15.033 7.749 1 29.73 ? C22 P8W 201 AAA 1 HETATM 6 C C01 P8W . . . B 2 -1.792 12.776 9.407 1 22.73 ? C01 P8W 201 AAA 1 HETATM 7 C C05 P8W . . . B 2 -0.944 13.217 10.576 1 24.72 ? C05 P8W 201 AAA 1 HETATM 8 C C06 P8W . . . B 2 0.295 13.749 10.454 1 25.42 ? C06 P8W 201 AAA 1 HETATM 9 N N07 P8W . . . B 2 0.856 13.914 9.244 1 26.38 ? N07 P8W 201 AAA 1 HETATM 10 C C09 P8W . . . B 2 2.185 14.423 8.983 1 26.33 ? C09 P8W 201 AAA 1 HETATM 11 C C12 P8W . . . B 2 3.247 13.353 8.938 1 27.87 ? C12 P8W 201 AAA 1 HETATM 12 C C19 P8W . . . B 2 5.481 12.72 8.28 1 30.63 ? C19 P8W 201 AAA 1 HETATM 13 C C23 P8W . . . B 2 4.786 15.185 6.366 1 29.6 ? C23 P8W 201 AAA 1 HETATM 14 C C25 P8W . . . B 2 4.94 16.44 5.798 1 28.45 ? C25 P8W 201 AAA 1 HETATM 15 C C27 P8W . . . B 2 4.99 17.563 6.597 1 29.37 ? C27 P8W 201 AAA 1 HETATM 16 C C29 P8W . . . B 2 4.883 17.434 7.966 1 31.25 ? C29 P8W 201 AAA 1 HETATM 17 C C31 P8W . . . B 2 4.726 16.179 8.54 1 30.42 ? C31 P8W 201 AAA 1 HETATM 18 C C33 P8W . . . B 2 0.987 14.125 11.651 1 26.14 ? C33 P8W 201 AAA 1 HETATM 19 N N35 P8W . . . B 2 0.517 13.997 12.843 1 27.49 ? N35 P8W 201 AAA 1 HETATM 20 N N36 P8W . . . B 2 -0.733 13.454 12.938 1 25.88 ? N36 P8W 201 AAA 1 HETATM 21 C C37 P8W . . . B 2 -1.234 13.312 14.296 1 27.15 ? C37 P8W 201 AAA 1 HETATM 22 C C41 P8W . . . B 2 -1.517 13.038 11.886 1 23.36 ? C41 P8W 201 AAA 1 HETATM 23 O O42 P8W . . . B 2 -2.626 12.568 12.075 1 22.2 ? O42 P8W 201 AAA 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #