data_6YQS # _model_server_result.job_id HKRkc6MZUE0GYwHxbrlbBA _model_server_result.datetime_utc '2024-11-05 05:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6YQS # _exptl.entry_id 6YQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-dimethyl-5-[[2-(4-methylpiperazin-1-yl)phenyl]methylamino]pyridazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.26 _cell.angle_beta 76.31 _cell.angle_gamma 72.9 _cell.entry_id 6YQS _cell.length_a 24.589 _cell.length_b 33.867 _cell.length_c 39.523 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 N5 O' _chem_comp.formula_weight 327.424 _chem_comp.id P8Z _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-dimethyl-5-[[2-(4-methylpiperazin-1-yl)phenyl]methylamino]pyridazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dimethyl-methylpiperazinyl-benzyl-aminopyridazinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C16 P8Z sing 237 n n C13 N12 P8Z sing 238 n n C29 N32 P8Z sing 239 n n C29 C28 P8Z sing 240 n n C16 N05 P8Z sing 241 n n N32 C34 P8Z sing 242 n n C46 C45 P8Z sing 243 n n C26 C28 P8Z doub 244 n y C26 C24 P8Z sing 245 n y C28 C19 P8Z sing 246 n y C24 C22 P8Z doub 247 n y C19 N12 P8Z sing 248 n n C19 C20 P8Z doub 249 n y N12 C09 P8Z sing 250 n n N05 C01 P8Z sing 251 n n N05 C06 P8Z sing 252 n n C22 C20 P8Z sing 253 n y C34 C45 P8Z doub 254 n n C34 C35 P8Z sing 255 n n C45 C43 P8Z sing 256 n n C09 C06 P8Z sing 257 n n C35 N37 P8Z doub 258 n n C43 O44 P8Z doub 259 n n C43 N38 P8Z sing 260 n n N37 N38 P8Z sing 261 n n N38 C39 P8Z sing 262 n n C13 H1 P8Z sing 263 n n C13 H2 P8Z sing 264 n n C20 H3 P8Z sing 265 n n C22 H4 P8Z sing 266 n n C24 H5 P8Z sing 267 n n C26 H6 P8Z sing 268 n n C01 H7 P8Z sing 269 n n C01 H8 P8Z sing 270 n n C01 H9 P8Z sing 271 n n C06 H11 P8Z sing 272 n n C06 H12 P8Z sing 273 n n C09 H13 P8Z sing 274 n n C09 H14 P8Z sing 275 n n C16 H15 P8Z sing 276 n n C16 H16 P8Z sing 277 n n C29 H17 P8Z sing 278 n n C29 H18 P8Z sing 279 n n N32 H19 P8Z sing 280 n n C35 H20 P8Z sing 281 n n C39 H21 P8Z sing 282 n n C39 H22 P8Z sing 283 n n C39 H23 P8Z sing 284 n n C46 H24 P8Z sing 285 n n C46 H25 P8Z sing 286 n n C46 H26 P8Z sing 287 n n # _atom_sites.entry_id 6YQS _atom_sites.fract_transf_matrix[1][1] 0.040669 _atom_sites.fract_transf_matrix[1][2] -0.012511 _atom_sites.fract_transf_matrix[1][3] -0.006574 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030893 _atom_sites.fract_transf_matrix[2][3] -0.009318 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P8Z AAA 1 201 1 P8Z LIG . C 3 HOH AAA 1 301 99 HOH HOH . C 3 HOH AAA 2 302 67 HOH HOH . C 3 HOH AAA 3 303 206 HOH HOH . C 3 HOH AAA 4 304 171 HOH HOH . C 3 HOH AAA 5 305 202 HOH HOH . C 3 HOH AAA 6 306 133 HOH HOH . C 3 HOH AAA 7 307 28 HOH HOH . C 3 HOH AAA 8 308 147 HOH HOH . C 3 HOH AAA 9 309 77 HOH HOH . C 3 HOH AAA 10 310 116 HOH HOH . C 3 HOH AAA 11 311 162 HOH HOH . C 3 HOH AAA 12 312 194 HOH HOH . C 3 HOH AAA 13 313 112 HOH HOH . C 3 HOH AAA 14 314 129 HOH HOH . C 3 HOH AAA 15 315 185 HOH HOH . C 3 HOH AAA 16 316 195 HOH HOH . C 3 HOH AAA 17 317 70 HOH HOH . C 3 HOH AAA 18 318 6 HOH HOH . C 3 HOH AAA 19 319 113 HOH HOH . C 3 HOH AAA 20 320 37 HOH HOH . C 3 HOH AAA 21 321 76 HOH HOH . C 3 HOH AAA 22 322 20 HOH HOH . C 3 HOH AAA 23 323 52 HOH HOH . C 3 HOH AAA 24 324 146 HOH HOH . C 3 HOH AAA 25 325 191 HOH HOH . C 3 HOH AAA 26 326 59 HOH HOH . C 3 HOH AAA 27 327 122 HOH HOH . C 3 HOH AAA 28 328 31 HOH HOH . C 3 HOH AAA 29 329 186 HOH HOH . C 3 HOH AAA 30 330 3 HOH HOH . C 3 HOH AAA 31 331 45 HOH HOH . C 3 HOH AAA 32 332 188 HOH HOH . C 3 HOH AAA 33 333 33 HOH HOH . C 3 HOH AAA 34 334 160 HOH HOH . C 3 HOH AAA 35 335 4 HOH HOH . C 3 HOH AAA 36 336 128 HOH HOH . C 3 HOH AAA 37 337 16 HOH HOH . C 3 HOH AAA 38 338 139 HOH HOH . C 3 HOH AAA 39 339 29 HOH HOH . C 3 HOH AAA 40 340 115 HOH HOH . C 3 HOH AAA 41 341 107 HOH HOH . C 3 HOH AAA 42 342 154 HOH HOH . C 3 HOH AAA 43 343 15 HOH HOH . C 3 HOH AAA 44 344 18 HOH HOH . C 3 HOH AAA 45 345 193 HOH HOH . C 3 HOH AAA 46 346 9 HOH HOH . C 3 HOH AAA 47 347 69 HOH HOH . C 3 HOH AAA 48 348 72 HOH HOH . C 3 HOH AAA 49 349 155 HOH HOH . C 3 HOH AAA 50 350 47 HOH HOH . C 3 HOH AAA 51 351 11 HOH HOH . C 3 HOH AAA 52 352 42 HOH HOH . C 3 HOH AAA 53 353 5 HOH HOH . C 3 HOH AAA 54 354 25 HOH HOH . C 3 HOH AAA 55 355 83 HOH HOH . C 3 HOH AAA 56 356 161 HOH HOH . C 3 HOH AAA 57 357 8 HOH HOH . C 3 HOH AAA 58 358 19 HOH HOH . C 3 HOH AAA 59 359 12 HOH HOH . C 3 HOH AAA 60 360 75 HOH HOH . C 3 HOH AAA 61 361 55 HOH HOH . C 3 HOH AAA 62 362 56 HOH HOH . C 3 HOH AAA 63 363 80 HOH HOH . C 3 HOH AAA 64 364 111 HOH HOH . C 3 HOH AAA 65 365 74 HOH HOH . C 3 HOH AAA 66 366 7 HOH HOH . C 3 HOH AAA 67 367 22 HOH HOH . C 3 HOH AAA 68 368 117 HOH HOH . C 3 HOH AAA 69 369 54 HOH HOH . C 3 HOH AAA 70 370 66 HOH HOH . C 3 HOH AAA 71 371 203 HOH HOH . C 3 HOH AAA 72 372 105 HOH HOH . C 3 HOH AAA 73 373 63 HOH HOH . C 3 HOH AAA 74 374 10 HOH HOH . C 3 HOH AAA 75 375 158 HOH HOH . C 3 HOH AAA 76 376 57 HOH HOH . C 3 HOH AAA 77 377 110 HOH HOH . C 3 HOH AAA 78 378 73 HOH HOH . C 3 HOH AAA 79 379 178 HOH HOH . C 3 HOH AAA 80 380 21 HOH HOH . C 3 HOH AAA 81 381 71 HOH HOH . C 3 HOH AAA 82 382 1 HOH HOH . C 3 HOH AAA 83 383 24 HOH HOH . C 3 HOH AAA 84 384 64 HOH HOH . C 3 HOH AAA 85 385 79 HOH HOH . C 3 HOH AAA 86 386 205 HOH HOH . C 3 HOH AAA 87 387 2 HOH HOH . C 3 HOH AAA 88 388 106 HOH HOH . C 3 HOH AAA 89 389 13 HOH HOH . C 3 HOH AAA 90 390 134 HOH HOH . C 3 HOH AAA 91 391 200 HOH HOH . C 3 HOH AAA 92 392 159 HOH HOH . C 3 HOH AAA 93 393 98 HOH HOH . C 3 HOH AAA 94 394 62 HOH HOH . C 3 HOH AAA 95 395 53 HOH HOH . C 3 HOH AAA 96 396 81 HOH HOH . C 3 HOH AAA 97 397 174 HOH HOH . C 3 HOH AAA 98 398 101 HOH HOH . C 3 HOH AAA 99 399 165 HOH HOH . C 3 HOH AAA 100 400 184 HOH HOH . C 3 HOH AAA 101 401 51 HOH HOH . C 3 HOH AAA 102 402 87 HOH HOH . C 3 HOH AAA 103 403 48 HOH HOH . C 3 HOH AAA 104 404 26 HOH HOH . C 3 HOH AAA 105 405 179 HOH HOH . C 3 HOH AAA 106 406 38 HOH HOH . C 3 HOH AAA 107 407 197 HOH HOH . C 3 HOH AAA 108 408 17 HOH HOH . C 3 HOH AAA 109 409 34 HOH HOH . C 3 HOH AAA 110 410 41 HOH HOH . C 3 HOH AAA 111 411 166 HOH HOH . C 3 HOH AAA 112 412 192 HOH HOH . C 3 HOH AAA 113 413 90 HOH HOH . C 3 HOH AAA 114 414 169 HOH HOH . C 3 HOH AAA 115 415 149 HOH HOH . C 3 HOH AAA 116 416 190 HOH HOH . C 3 HOH AAA 117 417 131 HOH HOH . C 3 HOH AAA 118 418 150 HOH HOH . C 3 HOH AAA 119 419 187 HOH HOH . C 3 HOH AAA 120 420 151 HOH HOH . C 3 HOH AAA 121 421 140 HOH HOH . C 3 HOH AAA 122 422 163 HOH HOH . C 3 HOH AAA 123 423 183 HOH HOH . C 3 HOH AAA 124 424 124 HOH HOH . C 3 HOH AAA 125 425 136 HOH HOH . C 3 HOH AAA 126 426 170 HOH HOH . C 3 HOH AAA 127 427 142 HOH HOH . C 3 HOH AAA 128 428 189 HOH HOH . C 3 HOH AAA 129 429 141 HOH HOH . C 3 HOH AAA 130 430 49 HOH HOH . C 3 HOH AAA 131 431 198 HOH HOH . C 3 HOH AAA 132 432 58 HOH HOH . C 3 HOH AAA 133 433 104 HOH HOH . C 3 HOH AAA 134 434 138 HOH HOH . C 3 HOH AAA 135 435 88 HOH HOH . C 3 HOH AAA 136 436 39 HOH HOH . C 3 HOH AAA 137 437 135 HOH HOH . C 3 HOH AAA 138 438 180 HOH HOH . C 3 HOH AAA 139 439 82 HOH HOH . C 3 HOH AAA 140 440 35 HOH HOH . C 3 HOH AAA 141 441 100 HOH HOH . C 3 HOH AAA 142 442 46 HOH HOH . C 3 HOH AAA 143 443 23 HOH HOH . C 3 HOH AAA 144 444 207 HOH HOH . C 3 HOH AAA 145 445 102 HOH HOH . C 3 HOH AAA 146 446 30 HOH HOH . C 3 HOH AAA 147 447 204 HOH HOH . C 3 HOH AAA 148 448 130 HOH HOH . C 3 HOH AAA 149 449 89 HOH HOH . C 3 HOH AAA 150 450 103 HOH HOH . C 3 HOH AAA 151 451 93 HOH HOH . C 3 HOH AAA 152 452 156 HOH HOH . C 3 HOH AAA 153 453 97 HOH HOH . C 3 HOH AAA 154 454 127 HOH HOH . C 3 HOH AAA 155 455 43 HOH HOH . C 3 HOH AAA 156 456 182 HOH HOH . C 3 HOH AAA 157 457 123 HOH HOH . C 3 HOH AAA 158 458 201 HOH HOH . C 3 HOH AAA 159 459 60 HOH HOH . C 3 HOH AAA 160 460 168 HOH HOH . C 3 HOH AAA 161 461 40 HOH HOH . C 3 HOH AAA 162 462 68 HOH HOH . C 3 HOH AAA 163 463 144 HOH HOH . C 3 HOH AAA 164 464 153 HOH HOH . C 3 HOH AAA 165 465 114 HOH HOH . C 3 HOH AAA 166 466 92 HOH HOH . C 3 HOH AAA 167 467 85 HOH HOH . C 3 HOH AAA 168 468 196 HOH HOH . C 3 HOH AAA 169 469 172 HOH HOH . C 3 HOH AAA 170 470 126 HOH HOH . C 3 HOH AAA 171 471 78 HOH HOH . C 3 HOH AAA 172 472 65 HOH HOH . C 3 HOH AAA 173 473 44 HOH HOH . C 3 HOH AAA 174 474 14 HOH HOH . C 3 HOH AAA 175 475 27 HOH HOH . C 3 HOH AAA 176 476 50 HOH HOH . C 3 HOH AAA 177 477 32 HOH HOH . C 3 HOH AAA 178 478 120 HOH HOH . C 3 HOH AAA 179 479 152 HOH HOH . C 3 HOH AAA 180 480 164 HOH HOH . C 3 HOH AAA 181 481 36 HOH HOH . C 3 HOH AAA 182 482 125 HOH HOH . C 3 HOH AAA 183 483 94 HOH HOH . C 3 HOH AAA 184 484 96 HOH HOH . C 3 HOH AAA 185 485 84 HOH HOH . C 3 HOH AAA 186 486 119 HOH HOH . C 3 HOH AAA 187 487 208 HOH HOH . C 3 HOH AAA 188 488 95 HOH HOH . C 3 HOH AAA 189 489 157 HOH HOH . C 3 HOH AAA 190 490 148 HOH HOH . C 3 HOH AAA 191 491 176 HOH HOH . C 3 HOH AAA 192 492 209 HOH HOH . C 3 HOH AAA 193 493 137 HOH HOH . C 3 HOH AAA 194 494 132 HOH HOH . C 3 HOH AAA 195 495 118 HOH HOH . C 3 HOH AAA 196 496 143 HOH HOH . C 3 HOH AAA 197 497 121 HOH HOH . C 3 HOH AAA 198 498 181 HOH HOH . C 3 HOH AAA 199 499 199 HOH HOH . C 3 HOH AAA 200 500 108 HOH HOH . C 3 HOH AAA 201 501 61 HOH HOH . C 3 HOH AAA 202 502 86 HOH HOH . C 3 HOH AAA 203 503 109 HOH HOH . C 3 HOH AAA 204 504 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 P8Z . . . B 2 4.814 15.317 10.115 1 20.28 ? N12 P8Z 201 AAA 1 HETATM 2 C C13 P8Z . . . B 2 5.066 16.075 8.889 1 18.92 ? C13 P8Z 201 AAA 1 HETATM 3 C C20 P8Z . . . B 2 5.673 13.032 10.412 1 18.14 ? C20 P8Z 201 AAA 1 HETATM 4 C C22 P8Z . . . B 2 5.487 11.666 10.284 1 18.01 ? C22 P8Z 201 AAA 1 HETATM 5 C C24 P8Z . . . B 2 4.309 11.165 9.778 1 17.73 ? C24 P8Z 201 AAA 1 HETATM 6 C C26 P8Z . . . B 2 3.296 12.025 9.366 1 17.48 ? C26 P8Z 201 AAA 1 HETATM 7 C C28 P8Z . . . B 2 3.445 13.408 9.468 1 16.59 ? C28 P8Z 201 AAA 1 HETATM 8 C C01 P8Z . . . B 2 5.338 19.498 10.476 1 25.34 ? C01 P8Z 201 AAA 1 HETATM 9 N N05 P8Z . . . B 2 5.621 18.072 10.25 1 22.54 ? N05 P8Z 201 AAA 1 HETATM 10 C C06 P8Z . . . B 2 5.348 17.294 11.456 1 23.26 ? C06 P8Z 201 AAA 1 HETATM 11 C C09 P8Z . . . B 2 5.63 15.825 11.23 1 22.97 ? C09 P8Z 201 AAA 1 HETATM 12 C C16 P8Z . . . B 2 4.805 17.551 9.118 1 22.31 ? C16 P8Z 201 AAA 1 HETATM 13 C C19 P8Z . . . B 2 4.67 13.915 10.008 1 17.31 ? C19 P8Z 201 AAA 1 HETATM 14 C C29 P8Z . . . B 2 2.335 14.326 9.02 1 15.41 ? C29 P8Z 201 AAA 1 HETATM 15 N N32 P8Z . . . B 2 1 13.788 9.24 1 13.91 ? N32 P8Z 201 AAA 1 HETATM 16 C C34 P8Z . . . B 2 0.394 13.678 10.435 1 14.02 ? C34 P8Z 201 AAA 1 HETATM 17 C C35 P8Z . . . B 2 1.067 14.044 11.646 1 15.03 ? C35 P8Z 201 AAA 1 HETATM 18 N N37 P8Z . . . B 2 0.551 13.978 12.819 1 16.04 ? N37 P8Z 201 AAA 1 HETATM 19 N N38 P8Z . . . B 2 -0.733 13.528 12.897 1 16.24 ? N38 P8Z 201 AAA 1 HETATM 20 C C39 P8Z . . . B 2 -1.284 13.479 14.253 1 15.62 ? C39 P8Z 201 AAA 1 HETATM 21 C C43 P8Z . . . B 2 -1.512 13.135 11.835 1 15.25 ? C43 P8Z 201 AAA 1 HETATM 22 O O44 P8Z . . . B 2 -2.656 12.752 12.003 1 15.7 ? O44 P8Z 201 AAA 1 HETATM 23 C C45 P8Z . . . B 2 -0.874 13.246 10.533 1 14.87 ? C45 P8Z 201 AAA 1 HETATM 24 C C46 P8Z . . . B 2 -1.682 12.844 9.328 1 15.73 ? C46 P8Z 201 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #