data_6YR1 # _model_server_result.job_id 6hMiL1SLWGZZ9GQSIHMMuw _model_server_result.datetime_utc '2024-11-13 09:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6YR1 # _exptl.entry_id 6YR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.665 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TIGECYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YR1 _cell.length_a 68.459 _cell.length_b 68.459 _cell.length_c 180.44 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.459 68.459 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O12 T1C . AAA T1C 301 1_555 C MG MG . AAA MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 B O11 T1C . AAA T1C 301 1_555 C MG MG . AAA MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc4 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C29 H41 N5 O8 2' _chem_comp.formula_weight 587.665 _chem_comp.id T1C _chem_comp.mon_nstd_flag . _chem_comp.name TIGECYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C94 C93 T1C sing 277 n n C93 C95 T1C sing 278 n n C93 C96 T1C sing 279 n n C93 N92 T1C sing 280 n n N92 C92 T1C sing 281 n n C92 C91 T1C sing 282 n n C91 O91 T1C doub 283 n n C91 N9 T1C sing 284 n n N9 C9 T1C sing 285 n n C9 C8 T1C doub 286 n y C9 C10 T1C sing 287 n y C8 C7 T1C sing 288 n y C7 N7 T1C sing 289 n n C7 C61 T1C doub 290 n y C6 C61 T1C sing 291 n n N7 C71 T1C sing 292 n n N7 C72 T1C sing 293 n n C61 C1A T1C sing 294 n y C6 C51 T1C sing 295 n n C51 C5 T1C sing 296 n n C51 C1B T1C sing 297 n n C5 C41 T1C sing 298 n n C41 C4 T1C sing 299 n n C41 C1C T1C sing 300 n n C4 N4 T1C sing 301 n n C4 C3 T1C sing 302 n n N4 C43 T1C sing 303 n n N4 C42 T1C sing 304 n n C3 O3 T1C sing 305 n n C3 C2 T1C doub 306 n n C2 C21 T1C sing 307 n n C2 C1 T1C sing 308 n n C21 O21 T1C doub 309 n n C21 N21 T1C sing 310 n n C1 O1 T1C doub 311 n n C1 C1C T1C sing 312 n n C1C O1C T1C sing 313 n n C1C C12 T1C sing 314 n n C12 O12 T1C sing 315 n n C12 C1B T1C doub 316 n n C1B C11 T1C sing 317 n n C11 O11 T1C doub 318 n n C11 C1A T1C sing 319 n n C1A C10 T1C doub 320 n y C10 O10 T1C sing 321 n n C94 H941 T1C sing 322 n n C94 H942 T1C sing 323 n n C94 H943 T1C sing 324 n n C95 H951 T1C sing 325 n n C95 H952 T1C sing 326 n n C95 H953 T1C sing 327 n n C96 H961 T1C sing 328 n n C96 H962 T1C sing 329 n n C96 H963 T1C sing 330 n n N92 H92 T1C sing 331 n n C92 H921 T1C sing 332 n n C92 H922 T1C sing 333 n n N9 H9 T1C sing 334 n n C8 H8 T1C sing 335 n n C71 H711 T1C sing 336 n n C71 H712 T1C sing 337 n n C71 H713 T1C sing 338 n n C72 H721 T1C sing 339 n n C72 H722 T1C sing 340 n n C72 H723 T1C sing 341 n n C6 H61C T1C sing 342 n n C6 H62C T1C sing 343 n n C51 H51 T1C sing 344 n n C5 H51C T1C sing 345 n n C5 H52C T1C sing 346 n n C41 H41 T1C sing 347 n n C4 H4 T1C sing 348 n n C43 H431 T1C sing 349 n n C43 H432 T1C sing 350 n n C43 H433 T1C sing 351 n n C42 H421 T1C sing 352 n n C42 H422 T1C sing 353 n n C42 H423 T1C sing 354 n n O3 H3 T1C sing 355 n n N21 H211 T1C sing 356 n n N21 H212 T1C sing 357 n n O1C H1C T1C sing 358 n n O12 H12 T1C sing 359 n n O10 H10 T1C sing 360 n n N4 H42 T1C sing 361 n n N7 H7 T1C sing 362 n n # _atom_sites.entry_id 6YR1 _atom_sites.fract_transf_matrix[1][1] 0.014607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T1C AAA 1 301 1209 T1C T1C . C 3 MG AAA 1 302 1210 MG MG . D 4 CL AAA 1 303 1211 CL CL . E 4 CL AAA 1 304 1212 CL CL . F 4 CL AAA 1 305 1213 CL CL . G 5 HOH AAA 1 401 2026 HOH HOH . G 5 HOH AAA 2 402 2009 HOH HOH . G 5 HOH AAA 3 403 2003 HOH HOH . G 5 HOH AAA 4 404 2029 HOH HOH . G 5 HOH AAA 5 405 2024 HOH HOH . G 5 HOH AAA 6 406 2022 HOH HOH . G 5 HOH AAA 7 407 2025 HOH HOH . G 5 HOH AAA 8 408 2039 HOH HOH . G 5 HOH AAA 9 409 2032 HOH HOH . G 5 HOH AAA 10 410 2023 HOH HOH . G 5 HOH AAA 11 411 2001 HOH HOH . G 5 HOH AAA 12 412 2028 HOH HOH . G 5 HOH AAA 13 413 2027 HOH HOH . G 5 HOH AAA 14 414 2030 HOH HOH . G 5 HOH AAA 15 415 2031 HOH HOH . G 5 HOH AAA 16 416 2033 HOH HOH . G 5 HOH AAA 17 417 2017 HOH HOH . G 5 HOH AAA 18 418 2006 HOH HOH . G 5 HOH AAA 19 419 2037 HOH HOH . G 5 HOH AAA 20 420 2002 HOH HOH . G 5 HOH AAA 21 421 2012 HOH HOH . G 5 HOH AAA 22 422 2034 HOH HOH . G 5 HOH AAA 23 423 2036 HOH HOH . G 5 HOH AAA 24 424 2038 HOH HOH . G 5 HOH AAA 25 425 2035 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C94 T1C . . . B 2 26.784 47.621 30.877 1 90.51 ? C94 T1C 301 AAA 1 HETATM 2 C C93 T1C . . . B 2 25.598 46.698 31.124 1 92.87 ? C93 T1C 301 AAA 1 HETATM 3 C C95 T1C . . . B 2 24.966 46.595 29.734 1 89.84 ? C95 T1C 301 AAA 1 HETATM 4 C C96 T1C . . . B 2 24.571 47.279 32.128 1 84.15 ? C96 T1C 301 AAA 1 HETATM 5 N N92 T1C . . . B 2 26.155 45.426 31.656 1 86.95 ? N92 T1C 301 AAA 1 HETATM 6 C C92 T1C . . . B 2 25.286 44.266 31.379 1 83.14 ? C92 T1C 301 AAA 1 HETATM 7 C C91 T1C . . . B 2 24.735 43.721 32.674 1 76.22 ? C91 T1C 301 AAA 1 HETATM 8 O O91 T1C . . . B 2 25.067 44.204 33.732 1 81.31 ? O91 T1C 301 AAA 1 HETATM 9 N N9 T1C . . . B 2 23.894 42.705 32.551 1 72.67 ? N9 T1C 301 AAA 1 HETATM 10 C C9 T1C . . . B 2 23.201 41.889 33.399 1 70.8 ? C9 T1C 301 AAA 1 HETATM 11 C C8 T1C . . . B 2 22.499 42.257 34.572 1 69.12 ? C8 T1C 301 AAA 1 HETATM 12 C C7 T1C . . . B 2 21.763 41.225 35.238 1 72.94 ? C7 T1C 301 AAA 1 HETATM 13 N N7 T1C . . . B 2 21.05 41.385 36.445 1 74.63 ? N7 T1C 301 AAA 1 HETATM 14 C C71 T1C . . . B 2 22.007 41.24 37.557 1 75.7 ? C71 T1C 301 AAA 1 HETATM 15 C C72 T1C . . . B 2 20.283 42.61 36.441 1 62.52 ? C72 T1C 301 AAA 1 HETATM 16 C C61 T1C . . . B 2 21.734 39.908 34.761 1 64.43 ? C61 T1C 301 AAA 1 HETATM 17 C C6 T1C . . . B 2 20.989 38.809 35.513 1 63.52 ? C6 T1C 301 AAA 1 HETATM 18 C C51 T1C . . . B 2 21.821 37.531 35.458 1 58.47 ? C51 T1C 301 AAA 1 HETATM 19 C C5 T1C . . . B 2 21.041 36.477 36.187 1 51.28 ? C5 T1C 301 AAA 1 HETATM 20 C C41 T1C . . . B 2 21.578 35.104 35.862 1 54.82 ? C41 T1C 301 AAA 1 HETATM 21 C C4 T1C . . . B 2 20.996 33.978 36.749 1 51.88 ? C4 T1C 301 AAA 1 HETATM 22 N N4 T1C . . . B 2 21.996 33.201 37.528 1 52.84 ? N4 T1C 301 AAA 1 HETATM 23 C C43 T1C . . . B 2 23.19 32.662 36.861 1 49.85 ? C43 T1C 301 AAA 1 HETATM 24 C C42 T1C . . . B 2 22.503 34.02 38.654 1 48.78 ? C42 T1C 301 AAA 1 HETATM 25 C C3 T1C . . . B 2 19.999 33.105 36.035 1 55.45 ? C3 T1C 301 AAA 1 HETATM 26 O O3 T1C . . . B 2 19.784 31.919 36.574 1 56.83 ? O3 T1C 301 AAA 1 HETATM 27 C C2 T1C . . . B 2 19.327 33.477 34.916 1 57.21 ? C2 T1C 301 AAA 1 HETATM 28 C C21 T1C . . . B 2 18.003 32.827 34.509 1 62.61 ? C21 T1C 301 AAA 1 HETATM 29 O O21 T1C . . . B 2 17.46 31.917 35.154 1 60.9 ? O21 T1C 301 AAA 1 HETATM 30 N N21 T1C . . . B 2 17.351 33.223 33.39 1 57.97 ? N21 T1C 301 AAA 1 HETATM 31 C C1 T1C . . . B 2 19.893 34.447 34.166 1 59.59 ? C1 T1C 301 AAA 1 HETATM 32 O O1 T1C . . . B 2 19.246 35.061 33.296 1 66.05 ? O1 T1C 301 AAA 1 HETATM 33 C C1C T1C . . . B 2 21.365 34.777 34.398 1 58.53 ? C1C T1C 301 AAA 1 HETATM 34 O O1C T1C . . . B 2 22.153 33.611 34.085 1 62.75 ? O1C T1C 301 AAA 1 HETATM 35 C C12 T1C . . . B 2 21.976 35.895 33.561 1 60.73 ? C12 T1C 301 AAA 1 HETATM 36 O O12 T1C . . . B 2 22.558 35.529 32.391 1 60.6 ? O12 T1C 301 AAA 1 HETATM 37 C C1B T1C . . . B 2 22.042 37.188 33.991 1 63.43 ? C1B T1C 301 AAA 1 HETATM 38 C C11 T1C . . . B 2 22.393 38.195 33.146 1 62.79 ? C11 T1C 301 AAA 1 HETATM 39 O O11 T1C . . . B 2 22.698 38.027 31.97 1 64.79 ? O11 T1C 301 AAA 1 HETATM 40 C C1A T1C . . . B 2 22.448 39.599 33.635 1 63.78 ? C1A T1C 301 AAA 1 HETATM 41 C C10 T1C . . . B 2 23.149 40.584 32.951 1 65.39 ? C10 T1C 301 AAA 1 HETATM 42 O O10 T1C . . . B 2 23.801 40.32 31.787 1 70.96 ? O10 T1C 301 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #