data_6YRP
#
_model_server_result.job_id            QWUM57fisBkMEU-KqXJhFQ 
_model_server_result.datetime_utc      '2024-11-13 04:46:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yrp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    6YRP 
#
_exptl.entry_id    6YRP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YRP 
_cell.length_a            68.14 
_cell.length_b            79 
_cell.length_c            79.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YRP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 88 A HIS 116 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc2 A ND1 HIS 90 A HIS 118 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc3 A OD2 ASP 92 A ASP 120 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc4 A NE2 HIS 127 A HIS 170 1_555 D ZN ZN . A ZN 403 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc5 A NE2 HIS 153 A HIS 196 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc6 A SG CYS 172 A CYS 221 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc7 A NE2 HIS 214 A HIS 263 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc8 A ND1 HIS 225 A HIS 285 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc9 B ZN ZN . A ZN 401 1_555 E N5 PJB . A PJB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc10 C ZN ZN . A ZN 402 1_555 E S6 PJB . A PJB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc11 D ZN ZN . A ZN 403 1_555 I O ACT . A ACT 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc12 D ZN ZN . A ZN 403 1_555 J O ACT . A ACT 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 98 n n 
C1 C2 EDO sing 99 n n 
C1 H11 EDO sing 100 n n 
C1 H12 EDO sing 101 n n 
O1 HO1 EDO sing 102 n n 
C2 O2 EDO sing 103 n n 
C2 H21 EDO sing 104 n n 
C2 H22 EDO sing 105 n n 
O2 HO2 EDO sing 106 n n 
#
_atom_sites.entry_id                     6YRP 
_atom_sites.fract_transf_matrix[1][1]    0.014676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012549 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 301 ZN ZN . 
C 2 ZN A 1 402 302 ZN ZN . 
D 2 ZN A 1 403 303 ZN ZN . 
E 3 PJB A 1 404 401 PJB JMV . 
F 4 EDO A 1 405 501 EDO EDO . 
G 4 EDO A 1 406 601 EDO EDO . 
H 4 EDO A 1 407 701 EDO EDO . 
I 5 ACT A 1 408 1 ACT ACT . 
J 5 ACT A 1 409 2 ACT ACT . 
K 6 DMS A 1 410 1 DMS DMS . 
L 7 HOH A 1 501 114 HOH HOH . 
L 7 HOH A 2 502 93 HOH HOH . 
L 7 HOH A 3 503 112 HOH HOH . 
L 7 HOH A 4 504 75 HOH HOH . 
L 7 HOH A 5 505 102 HOH HOH . 
L 7 HOH A 6 506 58 HOH HOH . 
L 7 HOH A 7 507 61 HOH HOH . 
L 7 HOH A 8 508 46 HOH HOH . 
L 7 HOH A 9 509 111 HOH HOH . 
L 7 HOH A 10 510 18 HOH HOH . 
L 7 HOH A 11 511 120 HOH HOH . 
L 7 HOH A 12 512 47 HOH HOH . 
L 7 HOH A 13 513 54 HOH HOH . 
L 7 HOH A 14 514 31 HOH HOH . 
L 7 HOH A 15 515 22 HOH HOH . 
L 7 HOH A 16 516 51 HOH HOH . 
L 7 HOH A 17 517 10 HOH HOH . 
L 7 HOH A 18 518 59 HOH HOH . 
L 7 HOH A 19 519 4 HOH HOH . 
L 7 HOH A 20 520 49 HOH HOH . 
L 7 HOH A 21 521 11 HOH HOH . 
L 7 HOH A 22 522 109 HOH HOH . 
L 7 HOH A 23 523 108 HOH HOH . 
L 7 HOH A 24 524 70 HOH HOH . 
L 7 HOH A 25 525 30 HOH HOH . 
L 7 HOH A 26 526 68 HOH HOH . 
L 7 HOH A 27 527 12 HOH HOH . 
L 7 HOH A 28 528 44 HOH HOH . 
L 7 HOH A 29 529 72 HOH HOH . 
L 7 HOH A 30 530 82 HOH HOH . 
L 7 HOH A 31 531 6 HOH HOH . 
L 7 HOH A 32 532 53 HOH HOH . 
L 7 HOH A 33 533 95 HOH HOH . 
L 7 HOH A 34 534 66 HOH HOH . 
L 7 HOH A 35 535 2 HOH HOH . 
L 7 HOH A 36 536 29 HOH HOH . 
L 7 HOH A 37 537 17 HOH HOH . 
L 7 HOH A 38 538 64 HOH HOH . 
L 7 HOH A 39 539 105 HOH HOH . 
L 7 HOH A 40 540 39 HOH HOH . 
L 7 HOH A 41 541 107 HOH HOH . 
L 7 HOH A 42 542 20 HOH HOH . 
L 7 HOH A 43 543 7 HOH HOH . 
L 7 HOH A 44 544 37 HOH HOH . 
L 7 HOH A 45 545 40 HOH HOH . 
L 7 HOH A 46 546 41 HOH HOH . 
L 7 HOH A 47 547 26 HOH HOH . 
L 7 HOH A 48 548 28 HOH HOH . 
L 7 HOH A 49 549 9 HOH HOH . 
L 7 HOH A 50 550 60 HOH HOH . 
L 7 HOH A 51 551 42 HOH HOH . 
L 7 HOH A 52 552 36 HOH HOH . 
L 7 HOH A 53 553 15 HOH HOH . 
L 7 HOH A 54 554 48 HOH HOH . 
L 7 HOH A 55 555 79 HOH HOH . 
L 7 HOH A 56 556 69 HOH HOH . 
L 7 HOH A 57 557 85 HOH HOH . 
L 7 HOH A 58 558 23 HOH HOH . 
L 7 HOH A 59 559 13 HOH HOH . 
L 7 HOH A 60 560 16 HOH HOH . 
L 7 HOH A 61 561 103 HOH HOH . 
L 7 HOH A 62 562 1 HOH HOH . 
L 7 HOH A 63 563 5 HOH HOH . 
L 7 HOH A 64 564 3 HOH HOH . 
L 7 HOH A 65 565 81 HOH HOH . 
L 7 HOH A 66 566 27 HOH HOH . 
L 7 HOH A 67 567 90 HOH HOH . 
L 7 HOH A 68 568 43 HOH HOH . 
L 7 HOH A 69 569 99 HOH HOH . 
L 7 HOH A 70 570 38 HOH HOH . 
L 7 HOH A 71 571 63 HOH HOH . 
L 7 HOH A 72 572 89 HOH HOH . 
L 7 HOH A 73 573 119 HOH HOH . 
L 7 HOH A 74 574 55 HOH HOH . 
L 7 HOH A 75 575 21 HOH HOH . 
L 7 HOH A 76 576 34 HOH HOH . 
L 7 HOH A 77 577 57 HOH HOH . 
L 7 HOH A 78 578 122 HOH HOH . 
L 7 HOH A 79 579 71 HOH HOH . 
L 7 HOH A 80 580 25 HOH HOH . 
L 7 HOH A 81 581 110 HOH HOH . 
L 7 HOH A 82 582 14 HOH HOH . 
L 7 HOH A 83 583 84 HOH HOH . 
L 7 HOH A 84 584 33 HOH HOH . 
L 7 HOH A 85 585 19 HOH HOH . 
L 7 HOH A 86 586 78 HOH HOH . 
L 7 HOH A 87 587 80 HOH HOH . 
L 7 HOH A 88 588 96 HOH HOH . 
L 7 HOH A 89 589 35 HOH HOH . 
L 7 HOH A 90 590 45 HOH HOH . 
L 7 HOH A 91 591 106 HOH HOH . 
L 7 HOH A 92 592 101 HOH HOH . 
L 7 HOH A 93 593 83 HOH HOH . 
L 7 HOH A 94 594 24 HOH HOH . 
L 7 HOH A 95 595 8 HOH HOH . 
L 7 HOH A 96 596 50 HOH HOH . 
L 7 HOH A 97 597 86 HOH HOH . 
L 7 HOH A 98 598 62 HOH HOH . 
L 7 HOH A 99 599 52 HOH HOH . 
L 7 HOH A 100 600 94 HOH HOH . 
L 7 HOH A 101 601 56 HOH HOH . 
L 7 HOH A 102 602 76 HOH HOH . 
L 7 HOH A 103 603 91 HOH HOH . 
L 7 HOH A 104 604 77 HOH HOH . 
L 7 HOH A 105 605 73 HOH HOH . 
L 7 HOH A 106 606 113 HOH HOH . 
L 7 HOH A 107 607 121 HOH HOH . 
L 7 HOH A 108 608 67 HOH HOH . 
L 7 HOH A 109 609 98 HOH HOH . 
L 7 HOH A 110 610 32 HOH HOH . 
L 7 HOH A 111 611 88 HOH HOH . 
L 7 HOH A 112 612 92 HOH HOH . 
L 7 HOH A 113 613 115 HOH HOH . 
L 7 HOH A 114 614 97 HOH HOH . 
L 7 HOH A 115 615 116 HOH HOH . 
L 7 HOH A 116 616 87 HOH HOH . 
L 7 HOH A 117 617 117 HOH HOH . 
L 7 HOH A 118 618 100 HOH HOH . 
L 7 HOH A 119 619 104 HOH HOH . 
L 7 HOH A 120 620 118 HOH HOH . 
L 7 HOH A 121 621 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 -16.156 -34.203 -17.591 1 44.92 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . F 4 -14.866 -34.245 -18.181 1 41.97 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . F 4 -16.596 -32.811 -17.264 1 43.09 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . F 4 -18.007 -32.678 -17.102 1 46.22 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#