data_6YSK
#
_model_server_result.job_id            2mPhMVqI8eWGmnzgXIwMDA 
_model_server_result.datetime_utc      '2024-11-05 13:50:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ysk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":510}' 
#
_entry.id    6YSK 
#
_exptl.entry_id    6YSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YSK 
_cell.length_a            59.94 
_cell.length_b            71.9 
_cell.length_c            78.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6YSK 
_atom_sites.fract_transf_matrix[1][1]    0.016683 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 501 NAG NAG . 
C 3 SO4 A 1 502 505 SO4 SO4 . 
D 3 SO4 A 1 503 508 SO4 SO4 . 
E 3 SO4 A 1 504 510 SO4 SO4 . 
F 4 DMS A 1 505 511 DMS DMS . 
G 5 EDO A 1 506 517 EDO EDO . 
H 5 EDO A 1 507 521 EDO EDO . 
I 6 PJK A 1 508 801 PJK LIG . 
J 5 EDO A 1 509 901 EDO EDO . 
K 5 EDO A 1 510 1001 EDO EDO . 
L 5 EDO A 1 511 1101 EDO EDO . 
M 5 EDO A 1 512 1301 EDO EDO . 
N 5 EDO A 1 513 1501 EDO EDO . 
O 5 EDO A 1 514 1601 EDO EDO . 
P 3 SO4 A 1 515 1 SO4 SO4 . 
Q 7 HOH A 1 601 667 HOH HOH . 
Q 7 HOH A 2 602 654 HOH HOH . 
Q 7 HOH A 3 603 776 HOH HOH . 
Q 7 HOH A 4 604 754 HOH HOH . 
Q 7 HOH A 5 605 704 HOH HOH . 
Q 7 HOH A 6 606 618 HOH HOH . 
Q 7 HOH A 7 607 690 HOH HOH . 
Q 7 HOH A 8 608 672 HOH HOH . 
Q 7 HOH A 9 609 678 HOH HOH . 
Q 7 HOH A 10 610 606 HOH HOH . 
Q 7 HOH A 11 611 602 HOH HOH . 
Q 7 HOH A 12 612 623 HOH HOH . 
Q 7 HOH A 13 613 750 HOH HOH . 
Q 7 HOH A 14 614 622 HOH HOH . 
Q 7 HOH A 15 615 633 HOH HOH . 
Q 7 HOH A 16 616 603 HOH HOH . 
Q 7 HOH A 17 617 636 HOH HOH . 
Q 7 HOH A 18 618 634 HOH HOH . 
Q 7 HOH A 19 619 675 HOH HOH . 
Q 7 HOH A 20 620 607 HOH HOH . 
Q 7 HOH A 21 621 608 HOH HOH . 
Q 7 HOH A 22 622 641 HOH HOH . 
Q 7 HOH A 23 623 620 HOH HOH . 
Q 7 HOH A 24 624 2 HOH HOH . 
Q 7 HOH A 25 625 683 HOH HOH . 
Q 7 HOH A 26 626 616 HOH HOH . 
Q 7 HOH A 27 627 629 HOH HOH . 
Q 7 HOH A 28 628 657 HOH HOH . 
Q 7 HOH A 29 629 663 HOH HOH . 
Q 7 HOH A 30 630 637 HOH HOH . 
Q 7 HOH A 31 631 640 HOH HOH . 
Q 7 HOH A 32 632 714 HOH HOH . 
Q 7 HOH A 33 633 632 HOH HOH . 
Q 7 HOH A 34 634 650 HOH HOH . 
Q 7 HOH A 35 635 643 HOH HOH . 
Q 7 HOH A 36 636 642 HOH HOH . 
Q 7 HOH A 37 637 645 HOH HOH . 
Q 7 HOH A 38 638 638 HOH HOH . 
Q 7 HOH A 39 639 648 HOH HOH . 
Q 7 HOH A 40 640 673 HOH HOH . 
Q 7 HOH A 41 641 652 HOH HOH . 
Q 7 HOH A 42 642 3 HOH HOH . 
Q 7 HOH A 43 643 691 HOH HOH . 
Q 7 HOH A 44 644 682 HOH HOH . 
Q 7 HOH A 45 645 644 HOH HOH . 
Q 7 HOH A 46 646 731 HOH HOH . 
Q 7 HOH A 47 647 1 HOH HOH . 
Q 7 HOH A 48 648 677 HOH HOH . 
Q 7 HOH A 49 649 674 HOH HOH . 
Q 7 HOH A 50 650 631 HOH HOH . 
Q 7 HOH A 51 651 651 HOH HOH . 
Q 7 HOH A 52 652 649 HOH HOH . 
Q 7 HOH A 53 653 659 HOH HOH . 
Q 7 HOH A 54 654 680 HOH HOH . 
Q 7 HOH A 55 655 749 HOH HOH . 
Q 7 HOH A 56 656 723 HOH HOH . 
Q 7 HOH A 57 657 725 HOH HOH . 
Q 7 HOH A 58 658 626 HOH HOH . 
Q 7 HOH A 59 659 665 HOH HOH . 
Q 7 HOH A 60 660 635 HOH HOH . 
Q 7 HOH A 61 661 668 HOH HOH . 
Q 7 HOH A 62 662 676 HOH HOH . 
Q 7 HOH A 63 663 6 HOH HOH . 
Q 7 HOH A 64 664 703 HOH HOH . 
Q 7 HOH A 65 665 653 HOH HOH . 
Q 7 HOH A 66 666 744 HOH HOH . 
Q 7 HOH A 67 667 694 HOH HOH . 
Q 7 HOH A 68 668 647 HOH HOH . 
Q 7 HOH A 69 669 701 HOH HOH . 
Q 7 HOH A 70 670 666 HOH HOH . 
Q 7 HOH A 71 671 658 HOH HOH . 
Q 7 HOH A 72 672 693 HOH HOH . 
Q 7 HOH A 73 673 687 HOH HOH . 
Q 7 HOH A 74 674 655 HOH HOH . 
Q 7 HOH A 75 675 724 HOH HOH . 
Q 7 HOH A 76 676 737 HOH HOH . 
Q 7 HOH A 77 677 707 HOH HOH . 
Q 7 HOH A 78 678 617 HOH HOH . 
Q 7 HOH A 79 679 709 HOH HOH . 
Q 7 HOH A 80 680 670 HOH HOH . 
Q 7 HOH A 81 681 727 HOH HOH . 
Q 7 HOH A 82 682 716 HOH HOH . 
Q 7 HOH A 83 683 698 HOH HOH . 
Q 7 HOH A 84 684 660 HOH HOH . 
Q 7 HOH A 85 685 733 HOH HOH . 
Q 7 HOH A 86 686 681 HOH HOH . 
Q 7 HOH A 87 687 753 HOH HOH . 
Q 7 HOH A 88 688 5 HOH HOH . 
Q 7 HOH A 89 689 720 HOH HOH . 
Q 7 HOH A 90 690 697 HOH HOH . 
Q 7 HOH A 91 691 695 HOH HOH . 
Q 7 HOH A 92 692 721 HOH HOH . 
Q 7 HOH A 93 693 688 HOH HOH . 
Q 7 HOH A 94 694 736 HOH HOH . 
Q 7 HOH A 95 695 718 HOH HOH . 
Q 7 HOH A 96 696 710 HOH HOH . 
Q 7 HOH A 97 697 735 HOH HOH . 
Q 7 HOH A 98 698 696 HOH HOH . 
Q 7 HOH A 99 699 745 HOH HOH . 
Q 7 HOH A 100 700 729 HOH HOH . 
Q 7 HOH A 101 701 732 HOH HOH . 
Q 7 HOH A 102 702 715 HOH HOH . 
Q 7 HOH A 103 703 756 HOH HOH . 
Q 7 HOH A 104 704 755 HOH HOH . 
Q 7 HOH A 105 705 689 HOH HOH . 
Q 7 HOH A 106 706 763 HOH HOH . 
Q 7 HOH A 107 707 747 HOH HOH . 
Q 7 HOH A 108 708 734 HOH HOH . 
Q 7 HOH A 109 709 719 HOH HOH . 
Q 7 HOH A 110 710 699 HOH HOH . 
Q 7 HOH A 111 711 700 HOH HOH . 
Q 7 HOH A 112 712 739 HOH HOH . 
Q 7 HOH A 113 713 621 HOH HOH . 
Q 7 HOH A 114 714 722 HOH HOH . 
Q 7 HOH A 115 715 4 HOH HOH . 
Q 7 HOH A 116 716 669 HOH HOH . 
Q 7 HOH A 117 717 730 HOH HOH . 
Q 7 HOH A 118 718 772 HOH HOH . 
Q 7 HOH A 119 719 761 HOH HOH . 
Q 7 HOH A 120 720 779 HOH HOH . 
Q 7 HOH A 121 721 773 HOH HOH . 
Q 7 HOH A 122 722 782 HOH HOH . 
Q 7 HOH A 123 723 783 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 5 -14.164 -19.797 3.868 1 63.35 ? C1 EDO 510 A 1 
HETATM 2 O O1 EDO . . . K 5 -15.048 -20.743 4.475 1 65.88 ? O1 EDO 510 A 1 
HETATM 3 C C2 EDO . . . K 5 -13.425 -19.021 4.947 1 61.21 ? C2 EDO 510 A 1 
HETATM 4 O O2 EDO . . . K 5 -12.373 -19.84 5.471 1 59.81 ? O2 EDO 510 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#