data_6YSN
#
_model_server_result.job_id            3xG5ZypdAI12jl9HJFQmsQ 
_model_server_result.datetime_utc      '2024-10-31 12:17:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ysn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    6YSN 
#
_exptl.entry_id    6YSN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              524.877 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-[3-(trifluoromethyloxy)phenoxy]purine-2,6-dione 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YSN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 557 A CYS 176 1_555 A SG CYS 562 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 557 B CYS 176 1_555 B SG CYS 562 B CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 C SG CYS 557 C CYS 176 1_555 C SG CYS 562 C CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 557 D CYS 176 1_555 D SG CYS 562 D CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C23 H20 Cl F3 N4 O5' 
_chem_comp.formula_weight    524.877 
_chem_comp.id                PJQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-[3-(trifluoromethyloxy)phenoxy]purine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F16 C14 PJQ sing 258 n n 
C11 C10 PJQ doub 259 n y 
C11 C12 PJQ sing 260 n y 
C10 C09 PJQ sing 261 n y 
F17 C14 PJQ sing 262 n n 
O13 C14 PJQ sing 263 n n 
O13 C12 PJQ sing 264 n n 
C14 F15 PJQ sing 265 n n 
C12 C18 PJQ doub 266 n y 
C09 C08 PJQ doub 267 n y 
C18 C08 PJQ sing 268 n y 
C08 O07 PJQ sing 269 n n 
O07 C06 PJQ sing 270 n n 
N05 C06 PJQ doub 271 n y 
N05 C04 PJQ sing 272 n y 
C06 N19 PJQ sing 273 n y 
C29 N28 PJQ sing 274 n n 
C04 N28 PJQ sing 275 n n 
C04 C03 PJQ doub 276 n y 
N19 C03 PJQ sing 277 n y 
N19 C20 PJQ sing 278 n n 
N28 C30 PJQ sing 279 n n 
C22 C23 PJQ doub 280 n y 
C22 C21 PJQ sing 281 n y 
C23 C24 PJQ sing 282 n y 
C03 C02 PJQ sing 283 n n 
C20 C21 PJQ sing 284 n n 
C21 C27 PJQ doub 285 n y 
C30 O36 PJQ doub 286 n n 
C30 N31 PJQ sing 287 n n 
C24 CL1 PJQ sing 288 n n 
C24 C26 PJQ doub 289 n y 
C02 N31 PJQ sing 290 n n 
C02 O01 PJQ doub 291 n n 
N31 C32 PJQ sing 292 n n 
C27 C26 PJQ sing 293 n y 
C32 C33 PJQ sing 294 n n 
C33 C34 PJQ sing 295 n n 
C34 O35 PJQ sing 296 n n 
C10 H1 PJQ sing 297 n n 
C11 H2 PJQ sing 298 n n 
C09 H3 PJQ sing 299 n n 
C18 H4 PJQ sing 300 n n 
C20 H5 PJQ sing 301 n n 
C20 H6 PJQ sing 302 n n 
C22 H7 PJQ sing 303 n n 
C23 H8 PJQ sing 304 n n 
C26 H9 PJQ sing 305 n n 
C27 H10 PJQ sing 306 n n 
C29 H11 PJQ sing 307 n n 
C29 H12 PJQ sing 308 n n 
C29 H13 PJQ sing 309 n n 
C32 H14 PJQ sing 310 n n 
C32 H15 PJQ sing 311 n n 
C33 H16 PJQ sing 312 n n 
C33 H17 PJQ sing 313 n n 
C34 H18 PJQ sing 314 n n 
C34 H19 PJQ sing 315 n n 
O35 H20 PJQ sing 316 n n 
#
_atom_sites.entry_id                     6YSN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PJQ A 1 901 901 PJQ PIC . 
F 2 PJQ B 1 901 901 PJQ PIC . 
G 2 PJQ C 1 901 901 PJQ PIC . 
H 2 PJQ D 1 801 801 PJQ PIC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 PJQ . . . E 2 118.997 134.264 156.906 1 22.48 ? C10 PJQ 901 A 1 
HETATM 2 C C11 PJQ . . . E 2 120.137 135.012 156.755 1 22.48 ? C11 PJQ 901 A 1 
HETATM 3 C C12 PJQ . . . E 2 120.634 135.758 157.83 1 22.48 ? C12 PJQ 901 A 1 
HETATM 4 C C02 PJQ . . . E 2 119.056 137.293 164.644 1 22.48 ? C02 PJQ 901 A 1 
HETATM 5 C C03 PJQ . . . E 2 118.784 136.889 163.287 1 22.48 ? C03 PJQ 901 A 1 
HETATM 6 C C04 PJQ . . . E 2 118.769 137.834 162.351 1 22.48 ? C04 PJQ 901 A 1 
HETATM 7 C C06 PJQ . . . E 2 118.368 135.927 161.387 1 22.48 ? C06 PJQ 901 A 1 
HETATM 8 C C08 PJQ . . . E 2 118.792 134.994 159.233 1 22.48 ? C08 PJQ 901 A 1 
HETATM 9 C C09 PJQ . . . E 2 118.315 134.247 158.143 1 22.48 ? C09 PJQ 901 A 1 
HETATM 10 C C14 PJQ . . . E 2 123.045 135.811 157.749 1 22.48 ? C14 PJQ 901 A 1 
HETATM 11 C C18 PJQ . . . E 2 119.948 135.739 159.073 1 22.48 ? C18 PJQ 901 A 1 
HETATM 12 C C20 PJQ . . . E 2 118.437 134.362 163.289 1 22.48 ? C20 PJQ 901 A 1 
HETATM 13 C C21 PJQ . . . E 2 116.98 134.146 163.711 1 22.48 ? C21 PJQ 901 A 1 
HETATM 14 C C22 PJQ . . . E 2 116.013 133.698 162.739 1 22.48 ? C22 PJQ 901 A 1 
HETATM 15 C C23 PJQ . . . E 2 114.677 133.506 163.12 1 22.48 ? C23 PJQ 901 A 1 
HETATM 16 C C24 PJQ . . . E 2 114.289 133.749 164.415 1 22.48 ? C24 PJQ 901 A 1 
HETATM 17 C C26 PJQ . . . E 2 115.242 134.194 165.373 1 22.48 ? C26 PJQ 901 A 1 
HETATM 18 C C27 PJQ . . . E 2 116.598 134.389 164.982 1 22.48 ? C27 PJQ 901 A 1 
HETATM 19 C C29 PJQ . . . E 2 118.977 140.163 161.609 1 22.48 ? C29 PJQ 901 A 1 
HETATM 20 C C30 PJQ . . . E 2 119.251 139.473 163.958 1 22.48 ? C30 PJQ 901 A 1 
HETATM 21 C C32 PJQ . . . E 2 119.567 139.036 166.279 1 22.48 ? C32 PJQ 901 A 1 
HETATM 22 C C33 PJQ . . . E 2 118.335 138.908 167.245 1 22.48 ? C33 PJQ 901 A 1 
HETATM 23 C C34 PJQ . . . E 2 118.771 138.307 168.63 1 22.48 ? C34 PJQ 901 A 1 
HETATM 24 F F15 PJQ . . . E 2 123.126 135.169 158.978 1 22.48 ? F15 PJQ 901 A 1 
HETATM 25 F F16 PJQ . . . E 2 123.142 134.848 156.694 1 22.48 ? F16 PJQ 901 A 1 
HETATM 26 F F17 PJQ . . . E 2 124.052 136.637 157.639 1 22.48 ? F17 PJQ 901 A 1 
HETATM 27 N N05 PJQ . . . E 2 118.494 137.213 161.161 1 22.48 ? N05 PJQ 901 A 1 
HETATM 28 N N19 PJQ . . . E 2 118.527 135.688 162.654 1 22.48 ? N19 PJQ 901 A 1 
HETATM 29 N N28 PJQ . . . E 2 118.998 139.123 162.67 1 22.48 ? N28 PJQ 901 A 1 
HETATM 30 N N31 PJQ . . . E 2 119.274 138.581 164.9 1 22.48 ? N31 PJQ 901 A 1 
HETATM 31 O O01 PJQ . . . E 2 119.091 136.344 165.679 1 22.48 ? O01 PJQ 901 A 1 
HETATM 32 O O07 PJQ . . . E 2 118.07 134.928 160.423 1 22.48 ? O07 PJQ 901 A 1 
HETATM 33 O O13 PJQ . . . E 2 121.815 136.528 157.662 1 22.48 ? O13 PJQ 901 A 1 
HETATM 34 O O35 PJQ . . . E 2 119.224 139.403 169.5 1 22.48 ? O35 PJQ 901 A 1 
HETATM 35 O O36 PJQ . . . E 2 119.451 140.601 164.221 1 22.48 ? O36 PJQ 901 A 1 
HETATM 36 CL CL1 PJQ . . . E 2 112.565 133.499 164.902 1 22.48 ? CL1 PJQ 901 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           36 
#