data_6YSW # _model_server_result.job_id 4GaNAkUQRsTfNg85Yb-PHw _model_server_result.datetime_utc '2024-12-22 01:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ysw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":810}' # _entry.id 6YSW # _exptl.entry_id 6YSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.165 _cell.angle_gamma 90 _cell.entry_id 6YSW _cell.length_a 204.793 _cell.length_b 90.724 _cell.length_c 128.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,Q 1 1 B,G,H,I,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6YSW _atom_sites.fract_transf_matrix[1][1] 0.004883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003191 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 801 5 SO4 SO4 . D 2 SO4 B 1 802 8 SO4 SO4 . E 2 SO4 B 1 803 9 SO4 SO4 . F 2 SO4 B 1 804 13 SO4 SO4 . G 2 SO4 A 1 801 1 SO4 SO4 . H 2 SO4 A 1 802 2 SO4 SO4 . I 2 SO4 A 1 803 3 SO4 SO4 . J 2 SO4 A 1 804 4 SO4 SO4 . K 2 SO4 A 1 805 6 SO4 SO4 . L 2 SO4 A 1 806 7 SO4 SO4 . M 2 SO4 A 1 807 10 SO4 SO4 . N 2 SO4 A 1 808 11 SO4 SO4 . O 2 SO4 A 1 809 12 SO4 SO4 . P 3 COA A 1 810 1 COA COA . Q 4 HOH B 1 901 4 HOH HOH . Q 4 HOH B 2 902 17 HOH HOH . Q 4 HOH B 3 903 14 HOH HOH . Q 4 HOH B 4 904 12 HOH HOH . Q 4 HOH B 5 905 22 HOH HOH . Q 4 HOH B 6 906 16 HOH HOH . Q 4 HOH B 7 907 23 HOH HOH . Q 4 HOH B 8 908 21 HOH HOH . R 4 HOH A 1 901 1 HOH HOH . R 4 HOH A 2 902 2 HOH HOH . R 4 HOH A 3 903 15 HOH HOH . R 4 HOH A 4 904 20 HOH HOH . R 4 HOH A 5 905 18 HOH HOH . R 4 HOH A 6 906 9 HOH HOH . R 4 HOH A 7 907 8 HOH HOH . R 4 HOH A 8 908 10 HOH HOH . R 4 HOH A 9 909 24 HOH HOH . R 4 HOH A 10 910 19 HOH HOH . R 4 HOH A 11 911 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . P 3 -37.857 2.981 28.817 1 71.28 ? N1A COA 810 A 1 HETATM 2 C C2A COA . . . P 3 -37.433 4.282 28.682 1 66.96 ? C2A COA 810 A 1 HETATM 3 N N3A COA . . . P 3 -36.518 4.832 27.871 1 67.03 ? N3A COA 810 A 1 HETATM 4 C C4A COA . . . P 3 -35.933 3.887 27.054 1 86.37 ? C4A COA 810 A 1 HETATM 5 C C5A COA . . . P 3 -36.266 2.494 27.074 1 87.41 ? C5A COA 810 A 1 HETATM 6 C C6A COA . . . P 3 -37.249 2.087 27.987 1 73.04 ? C6A COA 810 A 1 HETATM 7 N N6A COA . . . P 3 -37.614 0.771 28.057 1 70.17 ? N6A COA 810 A 1 HETATM 8 N N7A COA . . . P 3 -35.518 1.78 26.143 1 92.53 ? N7A COA 810 A 1 HETATM 9 C C8A COA . . . P 3 -34.754 2.727 25.577 1 93.92 ? C8A COA 810 A 1 HETATM 10 N N9A COA . . . P 3 -34.963 4 26.087 1 97.29 ? N9A COA 810 A 1 HETATM 11 C C1B COA . . . P 3 -34.295 5.243 25.682 1 110.8 ? C1B COA 810 A 1 HETATM 12 C C2B COA . . . P 3 -32.973 5.394 26.47 1 114.14 ? C2B COA 810 A 1 HETATM 13 O O2B COA . . . P 3 -33.142 6.143 27.626 1 116.76 ? O2B COA 810 A 1 HETATM 14 C C3B COA . . . P 3 -32.212 6.198 25.397 1 116.47 ? C3B COA 810 A 1 HETATM 15 O O3B COA . . . P 3 -32.734 7.436 25.329 1 114.65 ? O3B COA 810 A 1 HETATM 16 P P3B COA . . . P 3 -31.587 8.537 24.39 1 107.95 ? P3B COA 810 A 1 HETATM 17 O O7A COA . . . P 3 -32.4 8.541 23.143 1 117.24 ? O7A COA 810 A 1 HETATM 18 O O8A COA . . . P 3 -30.269 7.76 24.37 1 101.05 ? O8A COA 810 A 1 HETATM 19 O O9A COA . . . P 3 -31.671 9.781 25.242 1 104.57 ? O9A COA 810 A 1 HETATM 20 C C4B COA . . . P 3 -32.59 5.392 24.151 1 120.39 ? C4B COA 810 A 1 HETATM 21 O O4B COA . . . P 3 -33.993 5.119 24.288 1 117.39 ? O4B COA 810 A 1 HETATM 22 C C5B COA . . . P 3 -31.824 4.083 24.141 1 126.14 ? C5B COA 810 A 1 HETATM 23 O O5B COA . . . P 3 -30.741 4.153 23.253 1 126.43 ? O5B COA 810 A 1 HETATM 24 P P1A COA . . . P 3 -30.33 2.585 23.011 1 114.7 ? P1A COA 810 A 1 HETATM 25 O O1A COA . . . P 3 -31.09 1.755 23.969 1 106.4 ? O1A COA 810 A 1 HETATM 26 O O2A COA . . . P 3 -28.839 2.391 22.857 1 120.46 ? O2A COA 810 A 1 HETATM 27 O O3A COA . . . P 3 -31.012 2.151 21.532 1 119.41 ? O3A COA 810 A 1 HETATM 28 P P2A COA . . . P 3 -30.871 0.564 21.378 1 114.47 ? P2A COA 810 A 1 HETATM 29 O O4A COA . . . P 3 -30.812 0.226 19.942 1 105.65 ? O4A COA 810 A 1 HETATM 30 O O5A COA . . . P 3 -29.951 -0.102 22.377 1 120.84 ? O5A COA 810 A 1 HETATM 31 O O6A COA . . . P 3 -32.45 -0.036 21.781 1 121.33 ? O6A COA 810 A 1 HETATM 32 C CBP COA . . . P 3 -33.451 -1.369 23.397 1 100.16 ? CBP COA 810 A 1 HETATM 33 C CCP COA . . . P 3 -32.261 -1.214 22.464 1 115.05 ? CCP COA 810 A 1 HETATM 34 C CDP COA . . . P 3 -34.685 -1.72 22.582 1 85.19 ? CDP COA 810 A 1 HETATM 35 C CEP COA . . . P 3 -33.653 -0.05 24.097 1 95.87 ? CEP COA 810 A 1 HETATM 36 C CAP COA . . . P 3 -33.124 -2.483 24.42 1 106.13 ? CAP COA 810 A 1 HETATM 37 O OAP COA . . . P 3 -31.76 -2.768 24.492 1 112.03 ? OAP COA 810 A 1 HETATM 38 C C9P COA . . . P 3 -33.583 -2.136 25.851 1 103.78 ? C9P COA 810 A 1 HETATM 39 O O9P COA . . . P 3 -32.793 -1.953 26.766 1 99.17 ? O9P COA 810 A 1 HETATM 40 N N8P COA . . . P 3 -34.951 -2.05 26.078 1 103.09 ? N8P COA 810 A 1 HETATM 41 C C7P COA . . . P 3 -35.399 -1.731 27.418 1 90.46 ? C7P COA 810 A 1 HETATM 42 C C6P COA . . . P 3 -36.045 -2.986 27.989 1 84.57 ? C6P COA 810 A 1 HETATM 43 C C5P COA . . . P 3 -36.283 -2.734 29.447 1 79.32 ? C5P COA 810 A 1 HETATM 44 O O5P COA . . . P 3 -35.431 -2.835 30.313 1 75.85 ? O5P COA 810 A 1 HETATM 45 N N4P COA . . . P 3 -37.579 -2.37 29.795 1 78.53 ? N4P COA 810 A 1 HETATM 46 C C3P COA . . . P 3 -37.86 -2.119 31.206 1 80.47 ? C3P COA 810 A 1 HETATM 47 C C2P COA . . . P 3 -39.146 -1.325 31.332 1 88.58 ? C2P COA 810 A 1 HETATM 48 S S1P COA . . . P 3 -39.608 -1.252 33.09 1 105.02 ? S1P COA 810 A 1 # _model_server_stats.io_time_ms 150 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 1322 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 48 #