data_6YT1 # _model_server_result.job_id 93orTGTWPyX66X86rd3P-w _model_server_result.datetime_utc '2025-09-04 15:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6YT1 # _exptl.entry_id 6YT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YT1 _cell.length_a 87.74 _cell.length_b 87.74 _cell.length_c 112.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6YT1 _atom_sites.fract_transf_matrix[1][1] 0.011397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PK5 A 1 301 301 PK5 YSA . D 3 CIT A 1 302 401 CIT CIT . E 2 PK5 B 1 301 301 PK5 YSA . F 3 CIT B 1 302 401 CIT CIT . G 3 CIT B 1 303 501 CIT CIT . H 4 HOH A 1 401 248 HOH HOH . H 4 HOH A 2 402 152 HOH HOH . H 4 HOH A 3 403 139 HOH HOH . H 4 HOH A 4 404 181 HOH HOH . H 4 HOH A 5 405 22 HOH HOH . H 4 HOH A 6 406 226 HOH HOH . H 4 HOH A 7 407 137 HOH HOH . H 4 HOH A 8 408 253 HOH HOH . H 4 HOH A 9 409 6 HOH HOH . H 4 HOH A 10 410 163 HOH HOH . H 4 HOH A 11 411 97 HOH HOH . H 4 HOH A 12 412 62 HOH HOH . H 4 HOH A 13 413 82 HOH HOH . H 4 HOH A 14 414 39 HOH HOH . H 4 HOH A 15 415 19 HOH HOH . H 4 HOH A 16 416 195 HOH HOH . H 4 HOH A 17 417 110 HOH HOH . H 4 HOH A 18 418 227 HOH HOH . H 4 HOH A 19 419 93 HOH HOH . H 4 HOH A 20 420 79 HOH HOH . H 4 HOH A 21 421 18 HOH HOH . H 4 HOH A 22 422 150 HOH HOH . H 4 HOH A 23 423 145 HOH HOH . H 4 HOH A 24 424 123 HOH HOH . H 4 HOH A 25 425 118 HOH HOH . H 4 HOH A 26 426 14 HOH HOH . H 4 HOH A 27 427 55 HOH HOH . H 4 HOH A 28 428 263 HOH HOH . H 4 HOH A 29 429 68 HOH HOH . H 4 HOH A 30 430 16 HOH HOH . H 4 HOH A 31 431 3 HOH HOH . H 4 HOH A 32 432 264 HOH HOH . H 4 HOH A 33 433 40 HOH HOH . H 4 HOH A 34 434 192 HOH HOH . H 4 HOH A 35 435 144 HOH HOH . H 4 HOH A 36 436 29 HOH HOH . H 4 HOH A 37 437 135 HOH HOH . H 4 HOH A 38 438 15 HOH HOH . H 4 HOH A 39 439 256 HOH HOH . H 4 HOH A 40 440 175 HOH HOH . H 4 HOH A 41 441 234 HOH HOH . H 4 HOH A 42 442 25 HOH HOH . H 4 HOH A 43 443 258 HOH HOH . H 4 HOH A 44 444 85 HOH HOH . H 4 HOH A 45 445 92 HOH HOH . H 4 HOH A 46 446 54 HOH HOH . H 4 HOH A 47 447 12 HOH HOH . H 4 HOH A 48 448 89 HOH HOH . H 4 HOH A 49 449 35 HOH HOH . H 4 HOH A 50 450 61 HOH HOH . H 4 HOH A 51 451 9 HOH HOH . H 4 HOH A 52 452 59 HOH HOH . H 4 HOH A 53 453 250 HOH HOH . H 4 HOH A 54 454 206 HOH HOH . H 4 HOH A 55 455 43 HOH HOH . H 4 HOH A 56 456 251 HOH HOH . H 4 HOH A 57 457 38 HOH HOH . H 4 HOH A 58 458 33 HOH HOH . H 4 HOH A 59 459 5 HOH HOH . H 4 HOH A 60 460 108 HOH HOH . H 4 HOH A 61 461 194 HOH HOH . H 4 HOH A 62 462 153 HOH HOH . H 4 HOH A 63 463 73 HOH HOH . H 4 HOH A 64 464 83 HOH HOH . H 4 HOH A 65 465 142 HOH HOH . H 4 HOH A 66 466 130 HOH HOH . H 4 HOH A 67 467 53 HOH HOH . H 4 HOH A 68 468 81 HOH HOH . H 4 HOH A 69 469 91 HOH HOH . H 4 HOH A 70 470 32 HOH HOH . H 4 HOH A 71 471 51 HOH HOH . H 4 HOH A 72 472 94 HOH HOH . H 4 HOH A 73 473 67 HOH HOH . H 4 HOH A 74 474 147 HOH HOH . H 4 HOH A 75 475 71 HOH HOH . H 4 HOH A 76 476 65 HOH HOH . H 4 HOH A 77 477 95 HOH HOH . H 4 HOH A 78 478 114 HOH HOH . H 4 HOH A 79 479 124 HOH HOH . H 4 HOH A 80 480 127 HOH HOH . H 4 HOH A 81 481 76 HOH HOH . H 4 HOH A 82 482 173 HOH HOH . H 4 HOH A 83 483 100 HOH HOH . H 4 HOH A 84 484 172 HOH HOH . H 4 HOH A 85 485 180 HOH HOH . H 4 HOH A 86 486 27 HOH HOH . H 4 HOH A 87 487 249 HOH HOH . H 4 HOH A 88 488 198 HOH HOH . H 4 HOH A 89 489 60 HOH HOH . H 4 HOH A 90 490 242 HOH HOH . H 4 HOH A 91 491 211 HOH HOH . H 4 HOH A 92 492 105 HOH HOH . H 4 HOH A 93 493 261 HOH HOH . H 4 HOH A 94 494 259 HOH HOH . H 4 HOH A 95 495 128 HOH HOH . H 4 HOH A 96 496 166 HOH HOH . H 4 HOH A 97 497 188 HOH HOH . H 4 HOH A 98 498 170 HOH HOH . H 4 HOH A 99 499 23 HOH HOH . H 4 HOH A 100 500 262 HOH HOH . H 4 HOH A 101 501 77 HOH HOH . H 4 HOH A 102 502 233 HOH HOH . H 4 HOH A 103 503 232 HOH HOH . H 4 HOH A 104 504 240 HOH HOH . H 4 HOH A 105 505 56 HOH HOH . H 4 HOH A 106 506 239 HOH HOH . H 4 HOH A 107 507 266 HOH HOH . H 4 HOH A 108 508 129 HOH HOH . H 4 HOH A 109 509 235 HOH HOH . H 4 HOH A 110 510 171 HOH HOH . H 4 HOH A 111 511 210 HOH HOH . H 4 HOH A 112 512 265 HOH HOH . H 4 HOH A 113 513 222 HOH HOH . H 4 HOH A 114 514 237 HOH HOH . H 4 HOH A 115 515 119 HOH HOH . H 4 HOH A 116 516 230 HOH HOH . H 4 HOH A 117 517 189 HOH HOH . H 4 HOH A 118 518 109 HOH HOH . H 4 HOH A 119 519 148 HOH HOH . H 4 HOH A 120 520 244 HOH HOH . H 4 HOH A 121 521 143 HOH HOH . H 4 HOH A 122 522 247 HOH HOH . H 4 HOH A 123 523 207 HOH HOH . H 4 HOH A 124 524 241 HOH HOH . H 4 HOH A 125 525 90 HOH HOH . H 4 HOH A 126 526 201 HOH HOH . H 4 HOH A 127 527 246 HOH HOH . H 4 HOH A 128 528 255 HOH HOH . H 4 HOH A 129 529 202 HOH HOH . H 4 HOH A 130 530 174 HOH HOH . H 4 HOH A 131 531 146 HOH HOH . H 4 HOH A 132 532 252 HOH HOH . H 4 HOH A 133 533 219 HOH HOH . I 4 HOH B 1 401 182 HOH HOH . I 4 HOH B 2 402 134 HOH HOH . I 4 HOH B 3 403 187 HOH HOH . I 4 HOH B 4 404 190 HOH HOH . I 4 HOH B 5 405 46 HOH HOH . I 4 HOH B 6 406 116 HOH HOH . I 4 HOH B 7 407 106 HOH HOH . I 4 HOH B 8 408 8 HOH HOH . I 4 HOH B 9 409 176 HOH HOH . I 4 HOH B 10 410 57 HOH HOH . I 4 HOH B 11 411 169 HOH HOH . I 4 HOH B 12 412 21 HOH HOH . I 4 HOH B 13 413 48 HOH HOH . I 4 HOH B 14 414 164 HOH HOH . I 4 HOH B 15 415 101 HOH HOH . I 4 HOH B 16 416 20 HOH HOH . I 4 HOH B 17 417 24 HOH HOH . I 4 HOH B 18 418 47 HOH HOH . I 4 HOH B 19 419 102 HOH HOH . I 4 HOH B 20 420 86 HOH HOH . I 4 HOH B 21 421 11 HOH HOH . I 4 HOH B 22 422 13 HOH HOH . I 4 HOH B 23 423 160 HOH HOH . I 4 HOH B 24 424 214 HOH HOH . I 4 HOH B 25 425 208 HOH HOH . I 4 HOH B 26 426 30 HOH HOH . I 4 HOH B 27 427 154 HOH HOH . I 4 HOH B 28 428 36 HOH HOH . I 4 HOH B 29 429 156 HOH HOH . I 4 HOH B 30 430 7 HOH HOH . I 4 HOH B 31 431 10 HOH HOH . I 4 HOH B 32 432 4 HOH HOH . I 4 HOH B 33 433 162 HOH HOH . I 4 HOH B 34 434 99 HOH HOH . I 4 HOH B 35 435 17 HOH HOH . I 4 HOH B 36 436 196 HOH HOH . I 4 HOH B 37 437 120 HOH HOH . I 4 HOH B 38 438 1 HOH HOH . I 4 HOH B 39 439 125 HOH HOH . I 4 HOH B 40 440 185 HOH HOH . I 4 HOH B 41 441 2 HOH HOH . I 4 HOH B 42 442 138 HOH HOH . I 4 HOH B 43 443 31 HOH HOH . I 4 HOH B 44 444 122 HOH HOH . I 4 HOH B 45 445 121 HOH HOH . I 4 HOH B 46 446 44 HOH HOH . I 4 HOH B 47 447 140 HOH HOH . I 4 HOH B 48 448 113 HOH HOH . I 4 HOH B 49 449 155 HOH HOH . I 4 HOH B 50 450 96 HOH HOH . I 4 HOH B 51 451 199 HOH HOH . I 4 HOH B 52 452 133 HOH HOH . I 4 HOH B 53 453 103 HOH HOH . I 4 HOH B 54 454 26 HOH HOH . I 4 HOH B 55 455 151 HOH HOH . I 4 HOH B 56 456 80 HOH HOH . I 4 HOH B 57 457 184 HOH HOH . I 4 HOH B 58 458 168 HOH HOH . I 4 HOH B 59 459 41 HOH HOH . I 4 HOH B 60 460 34 HOH HOH . I 4 HOH B 61 461 63 HOH HOH . I 4 HOH B 62 462 107 HOH HOH . I 4 HOH B 63 463 42 HOH HOH . I 4 HOH B 64 464 28 HOH HOH . I 4 HOH B 65 465 75 HOH HOH . I 4 HOH B 66 466 141 HOH HOH . I 4 HOH B 67 467 78 HOH HOH . I 4 HOH B 68 468 64 HOH HOH . I 4 HOH B 69 469 58 HOH HOH . I 4 HOH B 70 470 87 HOH HOH . I 4 HOH B 71 471 159 HOH HOH . I 4 HOH B 72 472 157 HOH HOH . I 4 HOH B 73 473 161 HOH HOH . I 4 HOH B 74 474 149 HOH HOH . I 4 HOH B 75 475 215 HOH HOH . I 4 HOH B 76 476 115 HOH HOH . I 4 HOH B 77 477 37 HOH HOH . I 4 HOH B 78 478 70 HOH HOH . I 4 HOH B 79 479 131 HOH HOH . I 4 HOH B 80 480 69 HOH HOH . I 4 HOH B 81 481 111 HOH HOH . I 4 HOH B 82 482 74 HOH HOH . I 4 HOH B 83 483 45 HOH HOH . I 4 HOH B 84 484 209 HOH HOH . I 4 HOH B 85 485 66 HOH HOH . I 4 HOH B 86 486 165 HOH HOH . I 4 HOH B 87 487 228 HOH HOH . I 4 HOH B 88 488 220 HOH HOH . I 4 HOH B 89 489 88 HOH HOH . I 4 HOH B 90 490 225 HOH HOH . I 4 HOH B 91 491 183 HOH HOH . I 4 HOH B 92 492 50 HOH HOH . I 4 HOH B 93 493 245 HOH HOH . I 4 HOH B 94 494 132 HOH HOH . I 4 HOH B 95 495 72 HOH HOH . I 4 HOH B 96 496 197 HOH HOH . I 4 HOH B 97 497 216 HOH HOH . I 4 HOH B 98 498 49 HOH HOH . I 4 HOH B 99 499 243 HOH HOH . I 4 HOH B 100 500 126 HOH HOH . I 4 HOH B 101 501 212 HOH HOH . I 4 HOH B 102 502 257 HOH HOH . I 4 HOH B 103 503 231 HOH HOH . I 4 HOH B 104 504 267 HOH HOH . I 4 HOH B 105 505 186 HOH HOH . I 4 HOH B 106 506 177 HOH HOH . I 4 HOH B 107 507 178 HOH HOH . I 4 HOH B 108 508 52 HOH HOH . I 4 HOH B 109 509 193 HOH HOH . I 4 HOH B 110 510 205 HOH HOH . I 4 HOH B 111 511 191 HOH HOH . I 4 HOH B 112 512 221 HOH HOH . I 4 HOH B 113 513 204 HOH HOH . I 4 HOH B 114 514 238 HOH HOH . I 4 HOH B 115 515 84 HOH HOH . I 4 HOH B 116 516 112 HOH HOH . I 4 HOH B 117 517 200 HOH HOH . I 4 HOH B 118 518 203 HOH HOH . I 4 HOH B 119 519 213 HOH HOH . I 4 HOH B 120 520 217 HOH HOH . I 4 HOH B 121 521 158 HOH HOH . I 4 HOH B 122 522 179 HOH HOH . I 4 HOH B 123 523 136 HOH HOH . I 4 HOH B 124 524 104 HOH HOH . I 4 HOH B 125 525 117 HOH HOH . I 4 HOH B 126 526 218 HOH HOH . I 4 HOH B 127 527 167 HOH HOH . I 4 HOH B 128 528 260 HOH HOH . I 4 HOH B 129 529 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 3 86.85 -2.49 117.973 1 44.74 ? C1 CIT 302 B 1 HETATM 2 O O1 CIT . . . F 3 86.083 -1.567 118.314 1 37.51 ? O1 CIT 302 B 1 HETATM 3 O O2 CIT . . . F 3 87.166 -3.336 118.829 1 37.18 ? O2 CIT 302 B 1 HETATM 4 C C2 CIT . . . F 3 87.339 -2.556 116.544 1 44.4 ? C2 CIT 302 B 1 HETATM 5 C C3 CIT . . . F 3 87.696 -3.939 115.989 1 38.64 ? C3 CIT 302 B 1 HETATM 6 O O7 CIT . . . F 3 86.732 -4.929 116.408 1 27.41 ? O7 CIT 302 B 1 HETATM 7 C C4 CIT . . . F 3 87.779 -3.823 114.458 1 40.7 ? C4 CIT 302 B 1 HETATM 8 C C5 CIT . . . F 3 88.047 -5.148 113.786 1 43.52 ? C5 CIT 302 B 1 HETATM 9 O O3 CIT . . . F 3 88.254 -5.179 112.545 1 37.59 ? O3 CIT 302 B 1 HETATM 10 O O4 CIT . . . F 3 88.085 -6.217 114.445 1 39.42 ? O4 CIT 302 B 1 HETATM 11 C C6 CIT . . . F 3 89.043 -4.401 116.52 1 34.75 ? C6 CIT 302 B 1 HETATM 12 O O5 CIT . . . F 3 90.067 -3.725 116.261 1 32.63 ? O5 CIT 302 B 1 HETATM 13 O O6 CIT . . . F 3 89.148 -5.455 117.205 1 30.31 ? O6 CIT 302 B 1 HETATM 14 H H21 CIT . . . F 3 86.566 -2.129 115.906 1 53.29 ? H21 CIT 302 B 1 HETATM 15 H H22 CIT . . . F 3 88.225 -1.926 116.465 1 53.29 ? H22 CIT 302 B 1 HETATM 16 H HO7 CIT . . . F 3 87.193 -5.652 116.882 1 32.89 ? HO7 CIT 302 B 1 HETATM 17 H H41 CIT . . . F 3 88.575 -3.125 114.198 1 48.84 ? H41 CIT 302 B 1 HETATM 18 H H42 CIT . . . F 3 86.841 -3.417 114.081 1 48.84 ? H42 CIT 302 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #