data_6YTG # _model_server_result.job_id 0oPPQuem8fklAAELlNxLrg _model_server_result.datetime_utc '2024-10-17 01:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ytg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6YTG # _exptl.entry_id 6YTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.41 _cell.angle_gamma 90 _cell.entry_id 6YTG _cell.length_a 92.928 _cell.length_b 64.17 _cell.length_c 80.809 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C17 H16 Cl2 N4 O' _chem_comp.formula_weight 363.241 _chem_comp.id KHC _chem_comp.mon_nstd_flag . _chem_comp.name "(4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C6 KHC sing 173 n n N2 C5 KHC sing 174 n n C6 C7 KHC sing 175 n n C5 C4 KHC sing 176 n n C7 C3 KHC sing 177 n n C4 C3 KHC sing 178 n n C3 N1 KHC sing 179 n n C3 C8 KHC sing 180 n n N1 C2 KHC sing 181 n n N3 C9 KHC trip 182 n n C9 C8 KHC sing 183 n n C8 C10 KHC sing 184 n n C2 O KHC doub 185 n n C2 C1 KHC sing 186 n n C10 C1 KHC doub 187 n y C10 C11 KHC sing 188 n y C1 N KHC sing 189 n y C11 C12 KHC doub 190 n y C11 C16 KHC sing 191 n y N C KHC sing 192 n n N C16 KHC sing 193 n y C12 C13 KHC sing 194 n y C16 C15 KHC doub 195 n y C13 C14 KHC doub 196 n y C15 C14 KHC sing 197 n y C15 CL1 KHC sing 198 n n C14 CL KHC sing 199 n n C13 H1 KHC sing 200 n n C12 H2 KHC sing 201 n n C H3 KHC sing 202 n n C H4 KHC sing 203 n n C H5 KHC sing 204 n n C8 H6 KHC sing 205 n n N1 H7 KHC sing 206 n n C7 H8 KHC sing 207 n n C7 H9 KHC sing 208 n n C6 H10 KHC sing 209 n n C6 H11 KHC sing 210 n n N2 H12 KHC sing 211 n n C5 H14 KHC sing 212 n n C5 H15 KHC sing 213 n n C4 H16 KHC sing 214 n n C4 H17 KHC sing 215 n n # _atom_sites.entry_id 6YTG _atom_sites.fract_transf_matrix[1][1] 0.010761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KHC A 1 501 501 KHC KHC . C 2 KHC A 1 502 601 KHC KHC . D 3 HOH A 1 601 345 HOH HOH . D 3 HOH A 2 602 95 HOH HOH . D 3 HOH A 3 603 77 HOH HOH . D 3 HOH A 4 604 120 HOH HOH . D 3 HOH A 5 605 171 HOH HOH . D 3 HOH A 6 606 42 HOH HOH . D 3 HOH A 7 607 166 HOH HOH . D 3 HOH A 8 608 100 HOH HOH . D 3 HOH A 9 609 221 HOH HOH . D 3 HOH A 10 610 69 HOH HOH . D 3 HOH A 11 611 188 HOH HOH . D 3 HOH A 12 612 162 HOH HOH . D 3 HOH A 13 613 285 HOH HOH . D 3 HOH A 14 614 58 HOH HOH . D 3 HOH A 15 615 34 HOH HOH . D 3 HOH A 16 616 220 HOH HOH . D 3 HOH A 17 617 341 HOH HOH . D 3 HOH A 18 618 165 HOH HOH . D 3 HOH A 19 619 252 HOH HOH . D 3 HOH A 20 620 55 HOH HOH . D 3 HOH A 21 621 217 HOH HOH . D 3 HOH A 22 622 195 HOH HOH . D 3 HOH A 23 623 277 HOH HOH . D 3 HOH A 24 624 67 HOH HOH . D 3 HOH A 25 625 84 HOH HOH . D 3 HOH A 26 626 199 HOH HOH . D 3 HOH A 27 627 37 HOH HOH . D 3 HOH A 28 628 155 HOH HOH . D 3 HOH A 29 629 24 HOH HOH . D 3 HOH A 30 630 92 HOH HOH . D 3 HOH A 31 631 46 HOH HOH . D 3 HOH A 32 632 51 HOH HOH . D 3 HOH A 33 633 139 HOH HOH . D 3 HOH A 34 634 105 HOH HOH . D 3 HOH A 35 635 256 HOH HOH . D 3 HOH A 36 636 255 HOH HOH . D 3 HOH A 37 637 30 HOH HOH . D 3 HOH A 38 638 278 HOH HOH . D 3 HOH A 39 639 63 HOH HOH . D 3 HOH A 40 640 336 HOH HOH . D 3 HOH A 41 641 338 HOH HOH . D 3 HOH A 42 642 134 HOH HOH . D 3 HOH A 43 643 274 HOH HOH . D 3 HOH A 44 644 13 HOH HOH . D 3 HOH A 45 645 44 HOH HOH . D 3 HOH A 46 646 210 HOH HOH . D 3 HOH A 47 647 98 HOH HOH . D 3 HOH A 48 648 96 HOH HOH . D 3 HOH A 49 649 101 HOH HOH . D 3 HOH A 50 650 10 HOH HOH . D 3 HOH A 51 651 50 HOH HOH . D 3 HOH A 52 652 236 HOH HOH . D 3 HOH A 53 653 156 HOH HOH . D 3 HOH A 54 654 340 HOH HOH . D 3 HOH A 55 655 263 HOH HOH . D 3 HOH A 56 656 337 HOH HOH . D 3 HOH A 57 657 128 HOH HOH . D 3 HOH A 58 658 35 HOH HOH . D 3 HOH A 59 659 262 HOH HOH . D 3 HOH A 60 660 106 HOH HOH . D 3 HOH A 61 661 85 HOH HOH . D 3 HOH A 62 662 346 HOH HOH . D 3 HOH A 63 663 104 HOH HOH . D 3 HOH A 64 664 148 HOH HOH . D 3 HOH A 65 665 86 HOH HOH . D 3 HOH A 66 666 129 HOH HOH . D 3 HOH A 67 667 39 HOH HOH . D 3 HOH A 68 668 65 HOH HOH . D 3 HOH A 69 669 107 HOH HOH . D 3 HOH A 70 670 211 HOH HOH . D 3 HOH A 71 671 109 HOH HOH . D 3 HOH A 72 672 168 HOH HOH . D 3 HOH A 73 673 177 HOH HOH . D 3 HOH A 74 674 87 HOH HOH . D 3 HOH A 75 675 170 HOH HOH . D 3 HOH A 76 676 132 HOH HOH . D 3 HOH A 77 677 113 HOH HOH . D 3 HOH A 78 678 66 HOH HOH . D 3 HOH A 79 679 127 HOH HOH . D 3 HOH A 80 680 88 HOH HOH . D 3 HOH A 81 681 48 HOH HOH . D 3 HOH A 82 682 289 HOH HOH . D 3 HOH A 83 683 14 HOH HOH . D 3 HOH A 84 684 114 HOH HOH . D 3 HOH A 85 685 29 HOH HOH . D 3 HOH A 86 686 47 HOH HOH . D 3 HOH A 87 687 142 HOH HOH . D 3 HOH A 88 688 12 HOH HOH . D 3 HOH A 89 689 31 HOH HOH . D 3 HOH A 90 690 20 HOH HOH . D 3 HOH A 91 691 125 HOH HOH . D 3 HOH A 92 692 19 HOH HOH . D 3 HOH A 93 693 40 HOH HOH . D 3 HOH A 94 694 72 HOH HOH . D 3 HOH A 95 695 62 HOH HOH . D 3 HOH A 96 696 82 HOH HOH . D 3 HOH A 97 697 344 HOH HOH . D 3 HOH A 98 698 1 HOH HOH . D 3 HOH A 99 699 9 HOH HOH . D 3 HOH A 100 700 32 HOH HOH . D 3 HOH A 101 701 4 HOH HOH . D 3 HOH A 102 702 334 HOH HOH . D 3 HOH A 103 703 5 HOH HOH . D 3 HOH A 104 704 2 HOH HOH . D 3 HOH A 105 705 17 HOH HOH . D 3 HOH A 106 706 225 HOH HOH . D 3 HOH A 107 707 41 HOH HOH . D 3 HOH A 108 708 172 HOH HOH . D 3 HOH A 109 709 75 HOH HOH . D 3 HOH A 110 710 117 HOH HOH . D 3 HOH A 111 711 81 HOH HOH . D 3 HOH A 112 712 60 HOH HOH . D 3 HOH A 113 713 181 HOH HOH . D 3 HOH A 114 714 64 HOH HOH . D 3 HOH A 115 715 200 HOH HOH . D 3 HOH A 116 716 280 HOH HOH . D 3 HOH A 117 717 131 HOH HOH . D 3 HOH A 118 718 133 HOH HOH . D 3 HOH A 119 719 54 HOH HOH . D 3 HOH A 120 720 18 HOH HOH . D 3 HOH A 121 721 202 HOH HOH . D 3 HOH A 122 722 27 HOH HOH . D 3 HOH A 123 723 271 HOH HOH . D 3 HOH A 124 724 89 HOH HOH . D 3 HOH A 125 725 45 HOH HOH . D 3 HOH A 126 726 26 HOH HOH . D 3 HOH A 127 727 11 HOH HOH . D 3 HOH A 128 728 8 HOH HOH . D 3 HOH A 129 729 25 HOH HOH . D 3 HOH A 130 730 124 HOH HOH . D 3 HOH A 131 731 204 HOH HOH . D 3 HOH A 132 732 49 HOH HOH . D 3 HOH A 133 733 73 HOH HOH . D 3 HOH A 134 734 91 HOH HOH . D 3 HOH A 135 735 118 HOH HOH . D 3 HOH A 136 736 116 HOH HOH . D 3 HOH A 137 737 61 HOH HOH . D 3 HOH A 138 738 213 HOH HOH . D 3 HOH A 139 739 36 HOH HOH . D 3 HOH A 140 740 254 HOH HOH . D 3 HOH A 141 741 15 HOH HOH . D 3 HOH A 142 742 97 HOH HOH . D 3 HOH A 143 743 130 HOH HOH . D 3 HOH A 144 744 23 HOH HOH . D 3 HOH A 145 745 193 HOH HOH . D 3 HOH A 146 746 198 HOH HOH . D 3 HOH A 147 747 33 HOH HOH . D 3 HOH A 148 748 52 HOH HOH . D 3 HOH A 149 749 94 HOH HOH . D 3 HOH A 150 750 296 HOH HOH . D 3 HOH A 151 751 108 HOH HOH . D 3 HOH A 152 752 175 HOH HOH . D 3 HOH A 153 753 251 HOH HOH . D 3 HOH A 154 754 163 HOH HOH . D 3 HOH A 155 755 21 HOH HOH . D 3 HOH A 156 756 160 HOH HOH . D 3 HOH A 157 757 227 HOH HOH . D 3 HOH A 158 758 157 HOH HOH . D 3 HOH A 159 759 16 HOH HOH . D 3 HOH A 160 760 59 HOH HOH . D 3 HOH A 161 761 197 HOH HOH . D 3 HOH A 162 762 145 HOH HOH . D 3 HOH A 163 763 143 HOH HOH . D 3 HOH A 164 764 122 HOH HOH . D 3 HOH A 165 765 57 HOH HOH . D 3 HOH A 166 766 53 HOH HOH . D 3 HOH A 167 767 126 HOH HOH . D 3 HOH A 168 768 28 HOH HOH . D 3 HOH A 169 769 176 HOH HOH . D 3 HOH A 170 770 6 HOH HOH . D 3 HOH A 171 771 259 HOH HOH . D 3 HOH A 172 772 315 HOH HOH . D 3 HOH A 173 773 71 HOH HOH . D 3 HOH A 174 774 343 HOH HOH . D 3 HOH A 175 775 269 HOH HOH . D 3 HOH A 176 776 7 HOH HOH . D 3 HOH A 177 777 161 HOH HOH . D 3 HOH A 178 778 191 HOH HOH . D 3 HOH A 179 779 203 HOH HOH . D 3 HOH A 180 780 186 HOH HOH . D 3 HOH A 181 781 144 HOH HOH . D 3 HOH A 182 782 297 HOH HOH . D 3 HOH A 183 783 93 HOH HOH . D 3 HOH A 184 784 149 HOH HOH . D 3 HOH A 185 785 141 HOH HOH . D 3 HOH A 186 786 3 HOH HOH . D 3 HOH A 187 787 286 HOH HOH . D 3 HOH A 188 788 68 HOH HOH . D 3 HOH A 189 789 237 HOH HOH . D 3 HOH A 190 790 112 HOH HOH . D 3 HOH A 191 791 206 HOH HOH . D 3 HOH A 192 792 119 HOH HOH . D 3 HOH A 193 793 190 HOH HOH . D 3 HOH A 194 794 281 HOH HOH . D 3 HOH A 195 795 290 HOH HOH . D 3 HOH A 196 796 287 HOH HOH . D 3 HOH A 197 797 268 HOH HOH . D 3 HOH A 198 798 282 HOH HOH . D 3 HOH A 199 799 301 HOH HOH . D 3 HOH A 200 800 241 HOH HOH . D 3 HOH A 201 801 135 HOH HOH . D 3 HOH A 202 802 230 HOH HOH . D 3 HOH A 203 803 123 HOH HOH . D 3 HOH A 204 804 226 HOH HOH . D 3 HOH A 205 805 38 HOH HOH . D 3 HOH A 206 806 294 HOH HOH . D 3 HOH A 207 807 293 HOH HOH . D 3 HOH A 208 808 76 HOH HOH . D 3 HOH A 209 809 111 HOH HOH . D 3 HOH A 210 810 169 HOH HOH . D 3 HOH A 211 811 70 HOH HOH . D 3 HOH A 212 812 179 HOH HOH . D 3 HOH A 213 813 295 HOH HOH . D 3 HOH A 214 814 56 HOH HOH . D 3 HOH A 215 815 115 HOH HOH . D 3 HOH A 216 816 283 HOH HOH . D 3 HOH A 217 817 266 HOH HOH . D 3 HOH A 218 818 339 HOH HOH . D 3 HOH A 219 819 103 HOH HOH . D 3 HOH A 220 820 279 HOH HOH . D 3 HOH A 221 821 147 HOH HOH . D 3 HOH A 222 822 201 HOH HOH . D 3 HOH A 223 823 310 HOH HOH . D 3 HOH A 224 824 240 HOH HOH . D 3 HOH A 225 825 224 HOH HOH . D 3 HOH A 226 826 291 HOH HOH . D 3 HOH A 227 827 298 HOH HOH . D 3 HOH A 228 828 303 HOH HOH . D 3 HOH A 229 829 335 HOH HOH . D 3 HOH A 230 830 248 HOH HOH . D 3 HOH A 231 831 321 HOH HOH . D 3 HOH A 232 832 288 HOH HOH . D 3 HOH A 233 833 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 KHC . . . B 2 4.741 13.812 24.741 1 21.3 ? CL1 KHC 501 A 1 HETATM 2 C C15 KHC . . . B 2 4.136 12.636 23.646 1 15.78 ? C15 KHC 501 A 1 HETATM 3 C C14 KHC . . . B 2 3.623 11.442 24.127 1 16.03 ? C14 KHC 501 A 1 HETATM 4 CL CL KHC . . . B 2 3.612 11.11 25.815 1 15.48 ? CL KHC 501 A 1 HETATM 5 C C13 KHC . . . B 2 3.136 10.484 23.263 1 16.37 ? C13 KHC 501 A 1 HETATM 6 C C12 KHC . . . B 2 3.166 10.704 21.909 1 15.99 ? C12 KHC 501 A 1 HETATM 7 C C16 KHC . . . B 2 4.161 12.864 22.27 1 16.17 ? C16 KHC 501 A 1 HETATM 8 N N KHC . . . B 2 4.612 13.933 21.514 1 15.32 ? N KHC 501 A 1 HETATM 9 C C KHC . . . B 2 5.245 15.133 22.042 1 16.24 ? C KHC 501 A 1 HETATM 10 C C11 KHC . . . B 2 3.676 11.884 21.395 1 16.17 ? C11 KHC 501 A 1 HETATM 11 C C10 KHC . . . B 2 3.835 12.409 20.075 1 17.25 ? C10 KHC 501 A 1 HETATM 12 C C1 KHC . . . B 2 4.392 13.643 20.185 1 16.09 ? C1 KHC 501 A 1 HETATM 13 C C8 KHC . . . B 2 3.308 11.946 18.737 1 19.5 ? C8 KHC 501 A 1 HETATM 14 C C9 KHC . . . B 2 3.052 10.526 18.728 1 19.88 ? C9 KHC 501 A 1 HETATM 15 N N3 KHC . . . B 2 2.757 9.439 18.693 1 36.25 ? N3 KHC 501 A 1 HETATM 16 C C3 KHC . . . B 2 4.162 12.421 17.567 1 17.79 ? C3 KHC 501 A 1 HETATM 17 N N1 KHC . . . B 2 4.368 13.849 17.829 1 17.37 ? N1 KHC 501 A 1 HETATM 18 C C2 KHC . . . B 2 4.55 14.47 19.009 1 18.25 ? C2 KHC 501 A 1 HETATM 19 O O KHC . . . B 2 4.858 15.684 19.055 1 19.11 ? O KHC 501 A 1 HETATM 20 C C7 KHC . . . B 2 3.308 12.194 16.312 1 17.28 ? C7 KHC 501 A 1 HETATM 21 C C6 KHC . . . B 2 4.056 12.508 15.033 1 18.05 ? C6 KHC 501 A 1 HETATM 22 N N2 KHC . . . B 2 5.376 11.847 15 1 17.87 ? N2 KHC 501 A 1 HETATM 23 C C5 KHC . . . B 2 6.188 12.276 16.143 1 17.83 ? C5 KHC 501 A 1 HETATM 24 C C4 KHC . . . B 2 5.562 11.804 17.44 1 17.46 ? C4 KHC 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #