data_6YTI # _model_server_result.job_id oxdv_QsVXGYBwtflSYurKg _model_server_result.datetime_utc '2024-10-17 01:54:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6YTI # _exptl.entry_id 6YTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.83 _cell.angle_gamma 90 _cell.entry_id 6YTI _cell.length_a 91.518 _cell.length_b 63.873 _cell.length_c 79.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 6YTI _atom_sites.fract_transf_matrix[1][1] 0.010927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 601 601 EDO EDO . C 2 EDO A 1 602 701 EDO EDO . D 2 EDO A 1 603 801 EDO EDO . E 2 EDO A 1 604 901 EDO EDO . F 3 7A7 A 1 605 501 7A7 EHT . G 4 HOH A 1 701 77 HOH HOH . G 4 HOH A 2 702 31 HOH HOH . G 4 HOH A 3 703 79 HOH HOH . G 4 HOH A 4 704 57 HOH HOH . G 4 HOH A 5 705 38 HOH HOH . G 4 HOH A 6 706 58 HOH HOH . G 4 HOH A 7 707 70 HOH HOH . G 4 HOH A 8 708 33 HOH HOH . G 4 HOH A 9 709 48 HOH HOH . G 4 HOH A 10 710 50 HOH HOH . G 4 HOH A 11 711 25 HOH HOH . G 4 HOH A 12 712 67 HOH HOH . G 4 HOH A 13 713 36 HOH HOH . G 4 HOH A 14 714 16 HOH HOH . G 4 HOH A 15 715 83 HOH HOH . G 4 HOH A 16 716 3 HOH HOH . G 4 HOH A 17 717 62 HOH HOH . G 4 HOH A 18 718 4 HOH HOH . G 4 HOH A 19 719 37 HOH HOH . G 4 HOH A 20 720 87 HOH HOH . G 4 HOH A 21 721 97 HOH HOH . G 4 HOH A 22 722 43 HOH HOH . G 4 HOH A 23 723 44 HOH HOH . G 4 HOH A 24 724 12 HOH HOH . G 4 HOH A 25 725 59 HOH HOH . G 4 HOH A 26 726 105 HOH HOH . G 4 HOH A 27 727 13 HOH HOH . G 4 HOH A 28 728 88 HOH HOH . G 4 HOH A 29 729 26 HOH HOH . G 4 HOH A 30 730 45 HOH HOH . G 4 HOH A 31 731 63 HOH HOH . G 4 HOH A 32 732 96 HOH HOH . G 4 HOH A 33 733 95 HOH HOH . G 4 HOH A 34 734 55 HOH HOH . G 4 HOH A 35 735 8 HOH HOH . G 4 HOH A 36 736 11 HOH HOH . G 4 HOH A 37 737 15 HOH HOH . G 4 HOH A 38 738 20 HOH HOH . G 4 HOH A 39 739 82 HOH HOH . G 4 HOH A 40 740 46 HOH HOH . G 4 HOH A 41 741 92 HOH HOH . G 4 HOH A 42 742 23 HOH HOH . G 4 HOH A 43 743 24 HOH HOH . G 4 HOH A 44 744 1 HOH HOH . G 4 HOH A 45 745 101 HOH HOH . G 4 HOH A 46 746 86 HOH HOH . G 4 HOH A 47 747 85 HOH HOH . G 4 HOH A 48 748 35 HOH HOH . G 4 HOH A 49 749 39 HOH HOH . G 4 HOH A 50 750 66 HOH HOH . G 4 HOH A 51 751 9 HOH HOH . G 4 HOH A 52 752 19 HOH HOH . G 4 HOH A 53 753 40 HOH HOH . G 4 HOH A 54 754 32 HOH HOH . G 4 HOH A 55 755 6 HOH HOH . G 4 HOH A 56 756 27 HOH HOH . G 4 HOH A 57 757 91 HOH HOH . G 4 HOH A 58 758 42 HOH HOH . G 4 HOH A 59 759 51 HOH HOH . G 4 HOH A 60 760 2 HOH HOH . G 4 HOH A 61 761 34 HOH HOH . G 4 HOH A 62 762 41 HOH HOH . G 4 HOH A 63 763 84 HOH HOH . G 4 HOH A 64 764 10 HOH HOH . G 4 HOH A 65 765 17 HOH HOH . G 4 HOH A 66 766 89 HOH HOH . G 4 HOH A 67 767 64 HOH HOH . G 4 HOH A 68 768 90 HOH HOH . G 4 HOH A 69 769 73 HOH HOH . G 4 HOH A 70 770 18 HOH HOH . G 4 HOH A 71 771 14 HOH HOH . G 4 HOH A 72 772 100 HOH HOH . G 4 HOH A 73 773 93 HOH HOH . G 4 HOH A 74 774 28 HOH HOH . G 4 HOH A 75 775 103 HOH HOH . G 4 HOH A 76 776 49 HOH HOH . G 4 HOH A 77 777 75 HOH HOH . G 4 HOH A 78 778 29 HOH HOH . G 4 HOH A 79 779 5 HOH HOH . G 4 HOH A 80 780 81 HOH HOH . G 4 HOH A 81 781 71 HOH HOH . G 4 HOH A 82 782 104 HOH HOH . G 4 HOH A 83 783 74 HOH HOH . G 4 HOH A 84 784 72 HOH HOH . G 4 HOH A 85 785 76 HOH HOH . G 4 HOH A 86 786 60 HOH HOH . G 4 HOH A 87 787 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 6.408 -8.06 5.308 1 70.08 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . D 2 5.848 -8.829 6.368 1 69.87 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . D 2 5.401 -7.368 4.447 1 70.12 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . D 2 5.755 -6.026 4.095 1 67.9 ? O2 EDO 603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #