data_6YTM
#
_model_server_result.job_id            59K3WVSTn5N2iXlPoP6B4g 
_model_server_result.datetime_utc      '2024-11-05 04:00:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ytm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6YTM 
#
_exptl.entry_id    6YTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.962 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (2R)-2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]butanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YTM 
_cell.length_a            34.05 
_cell.length_b            50.53 
_cell.length_c            130.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C22 H23 Cl N4 O2 S' 
_chem_comp.formula_weight    442.962 
_chem_comp.id                PMW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (2R)-2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]butanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O03 C04 PMW sing 260 n n 
O03 C02 PMW sing 261 n n 
C06 C07 PMW sing 262 n n 
C06 C05 PMW sing 263 n n 
C02 C05 PMW sing 264 n n 
C02 O01 PMW doub 265 n n 
C05 C08 PMW sing 266 n n 
N10 C09 PMW doub 267 n y 
N10 N11 PMW sing 268 n y 
C08 C09 PMW sing 269 n n 
C08 N30 PMW sing 270 n n 
C09 N14 PMW sing 271 n y 
N11 C12 PMW doub 272 n y 
N30 C22 PMW doub 273 n n 
N14 C12 PMW sing 274 n y 
N14 C15 PMW sing 275 n n 
C12 C13 PMW sing 276 n n 
C22 C23 PMW sing 277 n n 
C22 C21 PMW sing 278 n n 
C24 C23 PMW doub 279 n y 
C24 C25 PMW sing 280 n y 
C15 C21 PMW doub 281 n y 
C15 S16 PMW sing 282 n y 
C23 C29 PMW sing 283 n y 
C21 C19 PMW sing 284 n y 
C25 C26 PMW doub 285 n y 
S16 C17 PMW sing 286 n y 
C29 C28 PMW doub 287 n y 
C19 C20 PMW sing 288 n n 
C19 C17 PMW doub 289 n y 
C26 C28 PMW sing 290 n y 
C26 CL1 PMW sing 291 n n 
C17 C18 PMW sing 292 n n 
C13 H1 PMW sing 293 n n 
C13 H2 PMW sing 294 n n 
C13 H3 PMW sing 295 n n 
C20 H4 PMW sing 296 n n 
C20 H5 PMW sing 297 n n 
C20 H6 PMW sing 298 n n 
C04 H7 PMW sing 299 n n 
C04 H8 PMW sing 300 n n 
C04 H9 PMW sing 301 n n 
C05 H10 PMW sing 302 n n 
C06 H11 PMW sing 303 n n 
C06 H12 PMW sing 304 n n 
C07 H13 PMW sing 305 n n 
C07 H14 PMW sing 306 n n 
C07 H15 PMW sing 307 n n 
C08 H16 PMW sing 308 n n 
C18 H17 PMW sing 309 n n 
C18 H18 PMW sing 310 n n 
C18 H19 PMW sing 311 n n 
C24 H21 PMW sing 312 n n 
C25 H22 PMW sing 313 n n 
C28 H23 PMW sing 314 n n 
C29 H24 PMW sing 315 n n 
#
_atom_sites.entry_id                     6YTM 
_atom_sites.fract_transf_matrix[1][1]    0.029369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01979 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PMW A 1 501 501 PMW ET1 . 
D 3 PXN A 1 502 601 PXN PXN . 
E 3 PXN A 1 503 701 PXN PXN . 
F 2 PMW B 1 501 501 PMW ET1 . 
G 4 HOH A 1 601 187 HOH HOH . 
G 4 HOH A 2 602 134 HOH HOH . 
G 4 HOH A 3 603 113 HOH HOH . 
G 4 HOH A 4 604 168 HOH HOH . 
G 4 HOH A 5 605 155 HOH HOH . 
G 4 HOH A 6 606 71 HOH HOH . 
G 4 HOH A 7 607 55 HOH HOH . 
G 4 HOH A 8 608 172 HOH HOH . 
G 4 HOH A 9 609 163 HOH HOH . 
G 4 HOH A 10 610 95 HOH HOH . 
G 4 HOH A 11 611 179 HOH HOH . 
G 4 HOH A 12 612 63 HOH HOH . 
G 4 HOH A 13 613 90 HOH HOH . 
G 4 HOH A 14 614 5 HOH HOH . 
G 4 HOH A 15 615 10 HOH HOH . 
G 4 HOH A 16 616 39 HOH HOH . 
G 4 HOH A 17 617 19 HOH HOH . 
G 4 HOH A 18 618 99 HOH HOH . 
G 4 HOH A 19 619 21 HOH HOH . 
G 4 HOH A 20 620 25 HOH HOH . 
G 4 HOH A 21 621 178 HOH HOH . 
G 4 HOH A 22 622 42 HOH HOH . 
G 4 HOH A 23 623 164 HOH HOH . 
G 4 HOH A 24 624 107 HOH HOH . 
G 4 HOH A 25 625 66 HOH HOH . 
G 4 HOH A 26 626 161 HOH HOH . 
G 4 HOH A 27 627 22 HOH HOH . 
G 4 HOH A 28 628 177 HOH HOH . 
G 4 HOH A 29 629 184 HOH HOH . 
G 4 HOH A 30 630 94 HOH HOH . 
G 4 HOH A 31 631 60 HOH HOH . 
G 4 HOH A 32 632 13 HOH HOH . 
G 4 HOH A 33 633 87 HOH HOH . 
G 4 HOH A 34 634 2 HOH HOH . 
G 4 HOH A 35 635 26 HOH HOH . 
G 4 HOH A 36 636 115 HOH HOH . 
G 4 HOH A 37 637 57 HOH HOH . 
G 4 HOH A 38 638 9 HOH HOH . 
G 4 HOH A 39 639 112 HOH HOH . 
G 4 HOH A 40 640 58 HOH HOH . 
G 4 HOH A 41 641 30 HOH HOH . 
G 4 HOH A 42 642 86 HOH HOH . 
G 4 HOH A 43 643 106 HOH HOH . 
G 4 HOH A 44 644 153 HOH HOH . 
G 4 HOH A 45 645 15 HOH HOH . 
G 4 HOH A 46 646 56 HOH HOH . 
G 4 HOH A 47 647 141 HOH HOH . 
G 4 HOH A 48 648 185 HOH HOH . 
G 4 HOH A 49 649 111 HOH HOH . 
G 4 HOH A 50 650 32 HOH HOH . 
G 4 HOH A 51 651 88 HOH HOH . 
G 4 HOH A 52 652 64 HOH HOH . 
G 4 HOH A 53 653 1 HOH HOH . 
G 4 HOH A 54 654 4 HOH HOH . 
G 4 HOH A 55 655 70 HOH HOH . 
G 4 HOH A 56 656 49 HOH HOH . 
G 4 HOH A 57 657 78 HOH HOH . 
G 4 HOH A 58 658 48 HOH HOH . 
G 4 HOH A 59 659 8 HOH HOH . 
G 4 HOH A 60 660 124 HOH HOH . 
G 4 HOH A 61 661 24 HOH HOH . 
G 4 HOH A 62 662 77 HOH HOH . 
G 4 HOH A 63 663 59 HOH HOH . 
G 4 HOH A 64 664 18 HOH HOH . 
G 4 HOH A 65 665 50 HOH HOH . 
G 4 HOH A 66 666 35 HOH HOH . 
G 4 HOH A 67 667 166 HOH HOH . 
G 4 HOH A 68 668 14 HOH HOH . 
G 4 HOH A 69 669 147 HOH HOH . 
G 4 HOH A 70 670 143 HOH HOH . 
G 4 HOH A 71 671 16 HOH HOH . 
G 4 HOH A 72 672 38 HOH HOH . 
G 4 HOH A 73 673 65 HOH HOH . 
G 4 HOH A 74 674 127 HOH HOH . 
G 4 HOH A 75 675 73 HOH HOH . 
G 4 HOH A 76 676 12 HOH HOH . 
G 4 HOH A 77 677 47 HOH HOH . 
G 4 HOH A 78 678 97 HOH HOH . 
G 4 HOH A 79 679 75 HOH HOH . 
G 4 HOH A 80 680 135 HOH HOH . 
G 4 HOH A 81 681 148 HOH HOH . 
G 4 HOH A 82 682 102 HOH HOH . 
G 4 HOH A 83 683 122 HOH HOH . 
G 4 HOH A 84 684 162 HOH HOH . 
G 4 HOH A 85 685 129 HOH HOH . 
G 4 HOH A 86 686 105 HOH HOH . 
G 4 HOH A 87 687 186 HOH HOH . 
G 4 HOH A 88 688 171 HOH HOH . 
G 4 HOH A 89 689 109 HOH HOH . 
G 4 HOH A 90 690 182 HOH HOH . 
G 4 HOH A 91 691 45 HOH HOH . 
G 4 HOH A 92 692 85 HOH HOH . 
G 4 HOH A 93 693 174 HOH HOH . 
G 4 HOH A 94 694 140 HOH HOH . 
G 4 HOH A 95 695 91 HOH HOH . 
G 4 HOH A 96 696 93 HOH HOH . 
G 4 HOH A 97 697 160 HOH HOH . 
G 4 HOH A 98 698 159 HOH HOH . 
G 4 HOH A 99 699 101 HOH HOH . 
G 4 HOH A 100 700 104 HOH HOH . 
G 4 HOH A 101 701 149 HOH HOH . 
G 4 HOH A 102 702 72 HOH HOH . 
G 4 HOH A 103 703 61 HOH HOH . 
G 4 HOH A 104 704 74 HOH HOH . 
G 4 HOH A 105 705 183 HOH HOH . 
H 4 HOH B 1 601 189 HOH HOH . 
H 4 HOH B 2 602 120 HOH HOH . 
H 4 HOH B 3 603 46 HOH HOH . 
H 4 HOH B 4 604 100 HOH HOH . 
H 4 HOH B 5 605 170 HOH HOH . 
H 4 HOH B 6 606 180 HOH HOH . 
H 4 HOH B 7 607 76 HOH HOH . 
H 4 HOH B 8 608 67 HOH HOH . 
H 4 HOH B 9 609 176 HOH HOH . 
H 4 HOH B 10 610 96 HOH HOH . 
H 4 HOH B 11 611 3 HOH HOH . 
H 4 HOH B 12 612 119 HOH HOH . 
H 4 HOH B 13 613 79 HOH HOH . 
H 4 HOH B 14 614 11 HOH HOH . 
H 4 HOH B 15 615 121 HOH HOH . 
H 4 HOH B 16 616 52 HOH HOH . 
H 4 HOH B 17 617 7 HOH HOH . 
H 4 HOH B 18 618 138 HOH HOH . 
H 4 HOH B 19 619 118 HOH HOH . 
H 4 HOH B 20 620 69 HOH HOH . 
H 4 HOH B 21 621 110 HOH HOH . 
H 4 HOH B 22 622 33 HOH HOH . 
H 4 HOH B 23 623 108 HOH HOH . 
H 4 HOH B 24 624 28 HOH HOH . 
H 4 HOH B 25 625 6 HOH HOH . 
H 4 HOH B 26 626 36 HOH HOH . 
H 4 HOH B 27 627 82 HOH HOH . 
H 4 HOH B 28 628 139 HOH HOH . 
H 4 HOH B 29 629 53 HOH HOH . 
H 4 HOH B 30 630 40 HOH HOH . 
H 4 HOH B 31 631 43 HOH HOH . 
H 4 HOH B 32 632 23 HOH HOH . 
H 4 HOH B 33 633 17 HOH HOH . 
H 4 HOH B 34 634 92 HOH HOH . 
H 4 HOH B 35 635 125 HOH HOH . 
H 4 HOH B 36 636 83 HOH HOH . 
H 4 HOH B 37 637 131 HOH HOH . 
H 4 HOH B 38 638 41 HOH HOH . 
H 4 HOH B 39 639 152 HOH HOH . 
H 4 HOH B 40 640 133 HOH HOH . 
H 4 HOH B 41 641 151 HOH HOH . 
H 4 HOH B 42 642 158 HOH HOH . 
H 4 HOH B 43 643 145 HOH HOH . 
H 4 HOH B 44 644 89 HOH HOH . 
H 4 HOH B 45 645 51 HOH HOH . 
H 4 HOH B 46 646 169 HOH HOH . 
H 4 HOH B 47 647 146 HOH HOH . 
H 4 HOH B 48 648 34 HOH HOH . 
H 4 HOH B 49 649 128 HOH HOH . 
H 4 HOH B 50 650 31 HOH HOH . 
H 4 HOH B 51 651 20 HOH HOH . 
H 4 HOH B 52 652 173 HOH HOH . 
H 4 HOH B 53 653 44 HOH HOH . 
H 4 HOH B 54 654 68 HOH HOH . 
H 4 HOH B 55 655 165 HOH HOH . 
H 4 HOH B 56 656 150 HOH HOH . 
H 4 HOH B 57 657 98 HOH HOH . 
H 4 HOH B 58 658 84 HOH HOH . 
H 4 HOH B 59 659 181 HOH HOH . 
H 4 HOH B 60 660 142 HOH HOH . 
H 4 HOH B 61 661 27 HOH HOH . 
H 4 HOH B 62 662 144 HOH HOH . 
H 4 HOH B 63 663 156 HOH HOH . 
H 4 HOH B 64 664 123 HOH HOH . 
H 4 HOH B 65 665 81 HOH HOH . 
H 4 HOH B 66 666 136 HOH HOH . 
H 4 HOH B 67 667 117 HOH HOH . 
H 4 HOH B 68 668 37 HOH HOH . 
H 4 HOH B 69 669 154 HOH HOH . 
H 4 HOH B 70 670 175 HOH HOH . 
H 4 HOH B 71 671 167 HOH HOH . 
H 4 HOH B 72 672 80 HOH HOH . 
H 4 HOH B 73 673 103 HOH HOH . 
H 4 HOH B 74 674 116 HOH HOH . 
H 4 HOH B 75 675 54 HOH HOH . 
H 4 HOH B 76 676 126 HOH HOH . 
H 4 HOH B 77 677 137 HOH HOH . 
H 4 HOH B 78 678 29 HOH HOH . 
H 4 HOH B 79 679 130 HOH HOH . 
H 4 HOH B 80 680 62 HOH HOH . 
H 4 HOH B 81 681 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 PMW . . . F 2 -2.59 16.982 -16.472 1 15.57 ? C13 PMW 501 B 1 
HETATM 2 C C17 PMW . . . F 2 -6.447 20.062 -17.234 1 22.08 ? C17 PMW 501 B 1 
HETATM 3 C C20 PMW . . . F 2 -8.656 20.191 -15.917 1 27.19 ? C20 PMW 501 B 1 
HETATM 4 C C21 PMW . . . F 2 -6.275 19.176 -14.995 1 18.16 ? C21 PMW 501 B 1 
HETATM 5 C C02 PMW . . . F 2 -5.282 20.606 -10.39 1 21.24 ? C02 PMW 501 B 1 
HETATM 6 C C04 PMW . . . F 2 -7.269 22.049 -10.438 1 36.1 ? C04 PMW 501 B 1 
HETATM 7 C C05 PMW . . . F 2 -4.154 19.844 -11.079 1 20.08 ? C05 PMW 501 B 1 
HETATM 8 C C06 PMW . . . F 2 -2.876 20.734 -11.059 1 19.74 ? C06 PMW 501 B 1 
HETATM 9 C C07 PMW . . . F 2 -2.89 21.935 -12.025 1 18.75 ? C07 PMW 501 B 1 
HETATM 10 C C08 PMW . . . F 2 -4.624 19.502 -12.506 1 18.4 ? C08 PMW 501 B 1 
HETATM 11 C C09 PMW . . . F 2 -3.645 18.658 -13.298 1 13.75 ? C09 PMW 501 B 1 
HETATM 12 C C12 PMW . . . F 2 -2.806 17.537 -15.115 1 17.53 ? C12 PMW 501 B 1 
HETATM 13 C C18 PMW . . . F 2 -6.8 20.674 -18.592 1 22.32 ? C18 PMW 501 B 1 
HETATM 14 C C19 PMW . . . F 2 -7.147 19.824 -16.087 1 19.64 ? C19 PMW 501 B 1 
HETATM 15 C C15 PMW . . . F 2 -5.01 18.938 -15.38 1 14.28 ? C15 PMW 501 B 1 
HETATM 16 C C22 PMW . . . F 2 -6.763 18.774 -13.634 1 17.56 ? C22 PMW 501 B 1 
HETATM 17 C C23 PMW . . . F 2 -8.001 17.859 -13.535 1 21.99 ? C23 PMW 501 B 1 
HETATM 18 C C24 PMW . . . F 2 -8.858 17.922 -12.423 1 24.67 ? C24 PMW 501 B 1 
HETATM 19 C C25 PMW . . . F 2 -10 17.118 -12.336 1 24.82 ? C25 PMW 501 B 1 
HETATM 20 C C26 PMW . . . F 2 -10.282 16.254 -13.407 1 21.98 ? C26 PMW 501 B 1 
HETATM 21 C C28 PMW . . . F 2 -9.479 16.17 -14.532 1 19.59 ? C28 PMW 501 B 1 
HETATM 22 C C29 PMW . . . F 2 -8.34 16.99 -14.586 1 21.11 ? C29 PMW 501 B 1 
HETATM 23 N N10 PMW . . . F 2 -2.534 18.013 -12.886 1 17.88 ? N10 PMW 501 B 1 
HETATM 24 N N11 PMW . . . F 2 -2.029 17.348 -13.99 1 15.75 ? N11 PMW 501 B 1 
HETATM 25 N N14 PMW . . . F 2 -3.873 18.386 -14.664 1 14.49 ? N14 PMW 501 B 1 
HETATM 26 N N30 PMW . . . F 2 -5.925 18.811 -12.61 1 17.69 ? N30 PMW 501 B 1 
HETATM 27 O O01 PMW . . . F 2 -5.442 20.507 -9.166 1 28.63 ? O01 PMW 501 B 1 
HETATM 28 O O03 PMW . . . F 2 -6.154 21.396 -11.088 1 20.59 ? O03 PMW 501 B 1 
HETATM 29 S S16 PMW . . . F 2 -4.76 19.506 -17.032 1 19.34 ? S16 PMW 501 B 1 
HETATM 30 CL CL1 PMW . . . F 2 -11.702 15.238 -13.336 1 30.91 ? CL1 PMW 501 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#