data_6YTM
#
_model_server_result.job_id            gpW3KOdEGEWSDJSmgRlr-A 
_model_server_result.datetime_utc      '2024-12-23 07:18:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ytm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    6YTM 
#
_exptl.entry_id    6YTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              368.463 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YTM 
_cell.length_a            34.05 
_cell.length_b            50.53 
_cell.length_c            130.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C17 H36 O8' 
_chem_comp.formula_weight    368.463 
_chem_comp.id                PXN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAA PXN sing 333 n n 
CAA HAA PXN sing 334 n n 
CAA HAAA PXN sing 335 n n 
CAA HAAB PXN sing 336 n n 
CAI CAB PXN sing 337 n n 
CAB HAB PXN sing 338 n n 
CAB HABA PXN sing 339 n n 
CAB HABB PXN sing 340 n n 
CAM CAC PXN sing 341 n n 
OAD CAC PXN sing 342 n n 
CAC HAC PXN sing 343 n n 
CAC HACA PXN sing 344 n n 
OAD CAE PXN sing 345 n n 
CAE CAF PXN sing 346 n n 
CAE HAE PXN sing 347 n n 
CAE HAEA PXN sing 348 n n 
CAF OAG PXN sing 349 n n 
CAF HAF PXN sing 350 n n 
OAG HOAG PXN sing 351 n n 
OAH CAI PXN sing 352 n n 
OAH HOAH PXN sing 353 n n 
CAI CAJ PXN sing 354 n n 
CAI HAI PXN sing 355 n n 
CAJ OAK PXN sing 356 n n 
CAJ HAJ PXN sing 357 n n 
CAJ HAJA PXN sing 358 n n 
OAK CAL PXN sing 359 n n 
CAL CAM PXN sing 360 n n 
CAL HAL PXN sing 361 n n 
CAL HALA PXN sing 362 n n 
CAM CAW PXN sing 363 n n 
CAM CAN PXN sing 364 n n 
OAO CAN PXN sing 365 n n 
CAN HAN PXN sing 366 n n 
CAN HANA PXN sing 367 n n 
OAO CAP PXN sing 368 n n 
CAQ CAP PXN sing 369 n n 
CAP HAP PXN sing 370 n n 
CAP HAPA PXN sing 371 n n 
CAX CAQ PXN sing 372 n n 
CAQ OAR PXN sing 373 n n 
CAQ HAQ PXN sing 374 n n 
OAR HOAR PXN sing 375 n n 
OAS CAT PXN sing 376 n n 
OAS HOAS PXN sing 377 n n 
CAU CAT PXN sing 378 n n 
CAT CAY PXN sing 379 n n 
CAT HAT PXN sing 380 n n 
OAV CAU PXN sing 381 n n 
CAU HAU PXN sing 382 n n 
CAU HAUA PXN sing 383 n n 
OAV CAW PXN sing 384 n n 
CAW HAW PXN sing 385 n n 
CAW HAWA PXN sing 386 n n 
CAX HAX PXN sing 387 n n 
CAX HAXA PXN sing 388 n n 
CAX HAXB PXN sing 389 n n 
CAY HAY PXN sing 390 n n 
CAY HAYA PXN sing 391 n n 
CAY HAYB PXN sing 392 n n 
#
_atom_sites.entry_id                     6YTM 
_atom_sites.fract_transf_matrix[1][1]    0.029369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01979 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PMW A 1 501 501 PMW ET1 . 
D 3 PXN A 1 502 601 PXN PXN . 
E 3 PXN A 1 503 701 PXN PXN . 
F 2 PMW B 1 501 501 PMW ET1 . 
G 4 HOH A 1 601 187 HOH HOH . 
G 4 HOH A 2 602 134 HOH HOH . 
G 4 HOH A 3 603 113 HOH HOH . 
G 4 HOH A 4 604 168 HOH HOH . 
G 4 HOH A 5 605 155 HOH HOH . 
G 4 HOH A 6 606 71 HOH HOH . 
G 4 HOH A 7 607 55 HOH HOH . 
G 4 HOH A 8 608 172 HOH HOH . 
G 4 HOH A 9 609 163 HOH HOH . 
G 4 HOH A 10 610 95 HOH HOH . 
G 4 HOH A 11 611 179 HOH HOH . 
G 4 HOH A 12 612 63 HOH HOH . 
G 4 HOH A 13 613 90 HOH HOH . 
G 4 HOH A 14 614 5 HOH HOH . 
G 4 HOH A 15 615 10 HOH HOH . 
G 4 HOH A 16 616 39 HOH HOH . 
G 4 HOH A 17 617 19 HOH HOH . 
G 4 HOH A 18 618 99 HOH HOH . 
G 4 HOH A 19 619 21 HOH HOH . 
G 4 HOH A 20 620 25 HOH HOH . 
G 4 HOH A 21 621 178 HOH HOH . 
G 4 HOH A 22 622 42 HOH HOH . 
G 4 HOH A 23 623 164 HOH HOH . 
G 4 HOH A 24 624 107 HOH HOH . 
G 4 HOH A 25 625 66 HOH HOH . 
G 4 HOH A 26 626 161 HOH HOH . 
G 4 HOH A 27 627 22 HOH HOH . 
G 4 HOH A 28 628 177 HOH HOH . 
G 4 HOH A 29 629 184 HOH HOH . 
G 4 HOH A 30 630 94 HOH HOH . 
G 4 HOH A 31 631 60 HOH HOH . 
G 4 HOH A 32 632 13 HOH HOH . 
G 4 HOH A 33 633 87 HOH HOH . 
G 4 HOH A 34 634 2 HOH HOH . 
G 4 HOH A 35 635 26 HOH HOH . 
G 4 HOH A 36 636 115 HOH HOH . 
G 4 HOH A 37 637 57 HOH HOH . 
G 4 HOH A 38 638 9 HOH HOH . 
G 4 HOH A 39 639 112 HOH HOH . 
G 4 HOH A 40 640 58 HOH HOH . 
G 4 HOH A 41 641 30 HOH HOH . 
G 4 HOH A 42 642 86 HOH HOH . 
G 4 HOH A 43 643 106 HOH HOH . 
G 4 HOH A 44 644 153 HOH HOH . 
G 4 HOH A 45 645 15 HOH HOH . 
G 4 HOH A 46 646 56 HOH HOH . 
G 4 HOH A 47 647 141 HOH HOH . 
G 4 HOH A 48 648 185 HOH HOH . 
G 4 HOH A 49 649 111 HOH HOH . 
G 4 HOH A 50 650 32 HOH HOH . 
G 4 HOH A 51 651 88 HOH HOH . 
G 4 HOH A 52 652 64 HOH HOH . 
G 4 HOH A 53 653 1 HOH HOH . 
G 4 HOH A 54 654 4 HOH HOH . 
G 4 HOH A 55 655 70 HOH HOH . 
G 4 HOH A 56 656 49 HOH HOH . 
G 4 HOH A 57 657 78 HOH HOH . 
G 4 HOH A 58 658 48 HOH HOH . 
G 4 HOH A 59 659 8 HOH HOH . 
G 4 HOH A 60 660 124 HOH HOH . 
G 4 HOH A 61 661 24 HOH HOH . 
G 4 HOH A 62 662 77 HOH HOH . 
G 4 HOH A 63 663 59 HOH HOH . 
G 4 HOH A 64 664 18 HOH HOH . 
G 4 HOH A 65 665 50 HOH HOH . 
G 4 HOH A 66 666 35 HOH HOH . 
G 4 HOH A 67 667 166 HOH HOH . 
G 4 HOH A 68 668 14 HOH HOH . 
G 4 HOH A 69 669 147 HOH HOH . 
G 4 HOH A 70 670 143 HOH HOH . 
G 4 HOH A 71 671 16 HOH HOH . 
G 4 HOH A 72 672 38 HOH HOH . 
G 4 HOH A 73 673 65 HOH HOH . 
G 4 HOH A 74 674 127 HOH HOH . 
G 4 HOH A 75 675 73 HOH HOH . 
G 4 HOH A 76 676 12 HOH HOH . 
G 4 HOH A 77 677 47 HOH HOH . 
G 4 HOH A 78 678 97 HOH HOH . 
G 4 HOH A 79 679 75 HOH HOH . 
G 4 HOH A 80 680 135 HOH HOH . 
G 4 HOH A 81 681 148 HOH HOH . 
G 4 HOH A 82 682 102 HOH HOH . 
G 4 HOH A 83 683 122 HOH HOH . 
G 4 HOH A 84 684 162 HOH HOH . 
G 4 HOH A 85 685 129 HOH HOH . 
G 4 HOH A 86 686 105 HOH HOH . 
G 4 HOH A 87 687 186 HOH HOH . 
G 4 HOH A 88 688 171 HOH HOH . 
G 4 HOH A 89 689 109 HOH HOH . 
G 4 HOH A 90 690 182 HOH HOH . 
G 4 HOH A 91 691 45 HOH HOH . 
G 4 HOH A 92 692 85 HOH HOH . 
G 4 HOH A 93 693 174 HOH HOH . 
G 4 HOH A 94 694 140 HOH HOH . 
G 4 HOH A 95 695 91 HOH HOH . 
G 4 HOH A 96 696 93 HOH HOH . 
G 4 HOH A 97 697 160 HOH HOH . 
G 4 HOH A 98 698 159 HOH HOH . 
G 4 HOH A 99 699 101 HOH HOH . 
G 4 HOH A 100 700 104 HOH HOH . 
G 4 HOH A 101 701 149 HOH HOH . 
G 4 HOH A 102 702 72 HOH HOH . 
G 4 HOH A 103 703 61 HOH HOH . 
G 4 HOH A 104 704 74 HOH HOH . 
G 4 HOH A 105 705 183 HOH HOH . 
H 4 HOH B 1 601 189 HOH HOH . 
H 4 HOH B 2 602 120 HOH HOH . 
H 4 HOH B 3 603 46 HOH HOH . 
H 4 HOH B 4 604 100 HOH HOH . 
H 4 HOH B 5 605 170 HOH HOH . 
H 4 HOH B 6 606 180 HOH HOH . 
H 4 HOH B 7 607 76 HOH HOH . 
H 4 HOH B 8 608 67 HOH HOH . 
H 4 HOH B 9 609 176 HOH HOH . 
H 4 HOH B 10 610 96 HOH HOH . 
H 4 HOH B 11 611 3 HOH HOH . 
H 4 HOH B 12 612 119 HOH HOH . 
H 4 HOH B 13 613 79 HOH HOH . 
H 4 HOH B 14 614 11 HOH HOH . 
H 4 HOH B 15 615 121 HOH HOH . 
H 4 HOH B 16 616 52 HOH HOH . 
H 4 HOH B 17 617 7 HOH HOH . 
H 4 HOH B 18 618 138 HOH HOH . 
H 4 HOH B 19 619 118 HOH HOH . 
H 4 HOH B 20 620 69 HOH HOH . 
H 4 HOH B 21 621 110 HOH HOH . 
H 4 HOH B 22 622 33 HOH HOH . 
H 4 HOH B 23 623 108 HOH HOH . 
H 4 HOH B 24 624 28 HOH HOH . 
H 4 HOH B 25 625 6 HOH HOH . 
H 4 HOH B 26 626 36 HOH HOH . 
H 4 HOH B 27 627 82 HOH HOH . 
H 4 HOH B 28 628 139 HOH HOH . 
H 4 HOH B 29 629 53 HOH HOH . 
H 4 HOH B 30 630 40 HOH HOH . 
H 4 HOH B 31 631 43 HOH HOH . 
H 4 HOH B 32 632 23 HOH HOH . 
H 4 HOH B 33 633 17 HOH HOH . 
H 4 HOH B 34 634 92 HOH HOH . 
H 4 HOH B 35 635 125 HOH HOH . 
H 4 HOH B 36 636 83 HOH HOH . 
H 4 HOH B 37 637 131 HOH HOH . 
H 4 HOH B 38 638 41 HOH HOH . 
H 4 HOH B 39 639 152 HOH HOH . 
H 4 HOH B 40 640 133 HOH HOH . 
H 4 HOH B 41 641 151 HOH HOH . 
H 4 HOH B 42 642 158 HOH HOH . 
H 4 HOH B 43 643 145 HOH HOH . 
H 4 HOH B 44 644 89 HOH HOH . 
H 4 HOH B 45 645 51 HOH HOH . 
H 4 HOH B 46 646 169 HOH HOH . 
H 4 HOH B 47 647 146 HOH HOH . 
H 4 HOH B 48 648 34 HOH HOH . 
H 4 HOH B 49 649 128 HOH HOH . 
H 4 HOH B 50 650 31 HOH HOH . 
H 4 HOH B 51 651 20 HOH HOH . 
H 4 HOH B 52 652 173 HOH HOH . 
H 4 HOH B 53 653 44 HOH HOH . 
H 4 HOH B 54 654 68 HOH HOH . 
H 4 HOH B 55 655 165 HOH HOH . 
H 4 HOH B 56 656 150 HOH HOH . 
H 4 HOH B 57 657 98 HOH HOH . 
H 4 HOH B 58 658 84 HOH HOH . 
H 4 HOH B 59 659 181 HOH HOH . 
H 4 HOH B 60 660 142 HOH HOH . 
H 4 HOH B 61 661 27 HOH HOH . 
H 4 HOH B 62 662 144 HOH HOH . 
H 4 HOH B 63 663 156 HOH HOH . 
H 4 HOH B 64 664 123 HOH HOH . 
H 4 HOH B 65 665 81 HOH HOH . 
H 4 HOH B 66 666 136 HOH HOH . 
H 4 HOH B 67 667 117 HOH HOH . 
H 4 HOH B 68 668 37 HOH HOH . 
H 4 HOH B 69 669 154 HOH HOH . 
H 4 HOH B 70 670 175 HOH HOH . 
H 4 HOH B 71 671 167 HOH HOH . 
H 4 HOH B 72 672 80 HOH HOH . 
H 4 HOH B 73 673 103 HOH HOH . 
H 4 HOH B 74 674 116 HOH HOH . 
H 4 HOH B 75 675 54 HOH HOH . 
H 4 HOH B 76 676 126 HOH HOH . 
H 4 HOH B 77 677 137 HOH HOH . 
H 4 HOH B 78 678 29 HOH HOH . 
H 4 HOH B 79 679 130 HOH HOH . 
H 4 HOH B 80 680 62 HOH HOH . 
H 4 HOH B 81 681 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB PXN . . . E 3 -2.774 -2.872 -20.116 1 32.17 ? CAB PXN 503 A 1 
HETATM 2 C CAC PXN . . . E 3 -5.876 -3.26 -15.267 1 56.18 ? CAC PXN 503 A 1 
HETATM 3 O OAD PXN . . . E 3 -5.034 -2.737 -14.276 1 58.49 ? OAD PXN 503 A 1 
HETATM 4 C CAE PXN . . . E 3 -4.982 -3.523 -13.118 1 56.76 ? CAE PXN 503 A 1 
HETATM 5 O OAH PXN . . . E 3 -4.427 -2.299 -21.752 1 45.53 ? OAH PXN 503 A 1 
HETATM 6 C CAI PXN . . . E 3 -3.996 -3.334 -20.909 1 41.37 ? CAI PXN 503 A 1 
HETATM 7 C CAJ PXN . . . E 3 -5.123 -3.735 -19.955 1 45.61 ? CAJ PXN 503 A 1 
HETATM 8 O OAK PXN . . . E 3 -4.899 -3.178 -18.692 1 50.44 ? OAK PXN 503 A 1 
HETATM 9 C CAL PXN . . . E 3 -5.923 -3.401 -17.761 1 52.45 ? CAL PXN 503 A 1 
HETATM 10 C CAM PXN . . . E 3 -5.699 -2.478 -16.564 1 52.53 ? CAM PXN 503 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#