data_6YTT
#
_model_server_result.job_id            U0QwZ9IJ8Z6_ge3yEY586w 
_model_server_result.datetime_utc      '2024-10-12 15:27:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ytt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":804}' 
#
_entry.id    6YTT 
#
_exptl.entry_id    6YTT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YTT 
_cell.length_a            298.943 
_cell.length_b            298.943 
_cell.length_c            128.895 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 S N N 
? 5 T N N 
? 5 CA N N 
? 5 OA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 488 A CYS 488 1_555 L NI NI . A NI 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc2 A SG CYS 574 A CYS 574 1_555 K NI NI . A NI 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc3 A SG CYS 574 A CYS 574 1_555 L NI NI . A NI 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc4 A N GLY 575 A GLY 575 1_555 K NI NI . A NI 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc5 A N CYS 576 A CYS 576 1_555 K NI NI . A NI 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc6 A SG CYS 576 A CYS 576 1_555 K NI NI . A NI 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc7 A SG CYS 576 A CYS 576 1_555 L NI NI . A NI 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc8 H S1 SF4 . A SF4 804 1_555 L NI NI . A NI 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc9 B OE1 GLU 226 B GLU 226 1_555 W NA NA . B NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc10 B NE2 HIS 259 B HIS 259 1_555 U FE2 XCC . B XCC 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc11 B O SER 342 B SER 342 1_555 X NA NA . B NA 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? 
metalc ? metalc12 B O TYR 345 B TYR 345 1_555 X NA NA . B NA 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc13 B O THR 347 B THR 347 1_555 X NA NA . B NA 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc14 C SG CYS 50 C CYS 50 1_555 CA FE1 SF4 . C SF4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc15 C OE2 GLU 226 C GLU 226 1_555 LA NA NA . C NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc16 C NE2 HIS 259 C HIS 259 1_555 DA FE2 XCC . C XCC 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc17 C SG CYS 333 C CYS 333 1_555 DA FE1 XCC . C XCC 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc18 D SG CYS 488 D CYS 488 1_555 PA NI NI . D NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc19 D SG CYS 574 D CYS 574 1_555 PA NI NI . D NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc20 D SG CYS 574 D CYS 574 1_555 QA NI NI . D NI 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc21 D N GLY 575 D GLY 575 1_555 QA NI NI . D NI 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc22 D SG CYS 576 D CYS 576 1_555 PA NI NI . D NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc23 D N CYS 576 D CYS 576 1_555 QA NI NI . D NI 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? 
metalc ? metalc24 OA S1 SF4 . D SF4 1002 1_555 PA NI NI . D NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 358 n n 
FE1 S3 SF4 sing 359 n n 
FE1 S4 SF4 sing 360 n n 
FE2 S1 SF4 sing 361 n n 
FE2 S3 SF4 sing 362 n n 
FE2 S4 SF4 sing 363 n n 
FE3 S1 SF4 sing 364 n n 
FE3 S2 SF4 sing 365 n n 
FE3 S4 SF4 sing 366 n n 
FE4 S1 SF4 sing 367 n n 
FE4 S2 SF4 sing 368 n n 
FE4 S3 SF4 sing 369 n n 
#
_atom_sites.entry_id                     6YTT 
_atom_sites.fract_transf_matrix[1][1]    0.003345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 801 781 GOL GOL . 
F 3 GOL A 1 802 1001 GOL GOL . 
G 4 PE4 A 1 803 1101 PE4 PE4 . 
H 5 SF4 A 1 804 1106 SF4 SF4 . 
I 6 F A 1 805 4 F F . 
J 6 F A 1 806 5 F F . 
K 7 NI A 1 807 1 NI NI . 
L 7 NI A 1 808 2 NI NI . 
M 3 GOL B 1 701 701 GOL GOL . 
N 3 GOL B 1 702 901 GOL GOL . 
O 4 PE4 B 1 703 1101 PE4 PE4 . 
P 3 GOL B 1 704 1201 GOL GOL . 
Q 3 GOL B 1 705 1301 GOL GOL . 
R 3 GOL B 1 706 1401 GOL GOL . 
S 5 SF4 B 1 707 1104 SF4 SF4 . 
T 5 SF4 B 1 708 1105 SF4 SF4 . 
U 8 XCC B 1 709 802 XCC XCC . 
V 6 F B 1 710 6 F F . 
W 9 NA B 1 711 2 NA NA . 
X 9 NA B 1 712 3 NA NA . 
Y 9 NA B 1 713 4 NA NA . 
Z 3 GOL C 1 1001 1001 GOL GOL . 
AA 3 GOL C 1 1002 701 GOL GOL . 
BA 3 GOL C 1 1003 801 GOL GOL . 
CA 5 SF4 C 1 1004 1103 SF4 SF4 . 
DA 8 XCC C 1 1005 803 XCC XCC . 
EA 6 F C 1 1006 1 F F . 
FA 6 F C 1 1007 2 F F . 
GA 6 F C 1 1008 3 F F . 
HA 6 F C 1 1009 7 F F . 
IA 6 F C 1 1010 8 F F . 
JA 6 F C 1 1011 9 F F . 
KA 9 NA C 1 1012 1 NA NA . 
LA 9 NA C 1 1013 5 NA NA . 
MA 9 NA C 1 1014 6 NA NA . 
NA 3 GOL D 1 1001 1001 GOL GOL . 
OA 5 SF4 D 1 1002 1107 SF4 SF4 . 
PA 7 NI D 1 1003 3 NI NI . 
QA 7 NI D 1 1004 5 NI NI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . H 5 105.063 -19.528 1.739 1 130.18 ? FE1 SF4 804 A 1 
HETATM 2 FE FE2 SF4 . . . H 5 104.035 -19.6 -0.678 1 189.89 ? FE2 SF4 804 A 1 
HETATM 3 FE FE3 SF4 . . . H 5 102.423 -19.589 1.43 1 126.83 ? FE3 SF4 804 A 1 
HETATM 4 FE FE4 SF4 . . . H 5 103.885 -21.735 0.869 1 205.51 ? FE4 SF4 804 A 1 
HETATM 5 S S1 SF4 . . . H 5 102.171 -20.926 -0.441 1 213.11 ? S1 SF4 804 A 1 
HETATM 6 S S2 SF4 . . . H 5 103.606 -20.826 2.969 1 159.66 ? S2 SF4 804 A 1 
HETATM 7 S S3 SF4 . . . H 5 105.843 -20.859 0.022 1 176.16 ? S3 SF4 804 A 1 
HETATM 8 S S4 SF4 . . . H 5 103.79 -17.845 0.79 1 127.22 ? S4 SF4 804 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#