data_6YU3
#
_model_server_result.job_id            Ed38zdqdRT8kCrzqHOImKw 
_model_server_result.datetime_utc      '2024-10-14 09:22:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yu3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":704}' 
#
_entry.id    6YU3 
#
_exptl.entry_id    6YU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.76 
_cell.angle_gamma         90 
_cell.entry_id            6YU3 
_cell.length_a            44.28 
_cell.length_b            49.89 
_cell.length_c            110.05 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 26 A GLY 24 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc2 A O ALA 28 A ALA 26 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 A O VAL 29 A VAL 27 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc5 A O THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc8 A O ALA 322 A ALA 320 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc9 A OG SER 325 A SER 323 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc10 A OG SER 326 A SER 324 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc11 B NA NA . A NA 701 1_555 L O HOH . A HOH 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc12 C NA NA . A NA 702 1_555 D OXT PHE . A PHE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 173 n n 
C1B O1B LMT sing 174 n n 
C1B O5B LMT sing 175 n n 
C1B H1B LMT sing 176 n n 
C2B C3B LMT sing 177 n n 
C2B O2B LMT sing 178 n n 
C2B H2B LMT sing 179 n n 
C3B C4B LMT sing 180 n n 
C3B O3B LMT sing 181 n n 
C3B H3B LMT sing 182 n n 
C4B C5B LMT sing 183 n n 
C4B O4' LMT sing 184 n n 
C4B H4B LMT sing 185 n n 
C5B C6B LMT sing 186 n n 
C5B O5B LMT sing 187 n n 
C5B H5B LMT sing 188 n n 
C6B O6B LMT sing 189 n n 
C6B "H6'2" LMT sing 190 n n 
C6B "H6'1" LMT sing 191 n n 
O1B C4' LMT sing 192 n n 
O2B H2O1 LMT sing 193 n n 
O3B H3O1 LMT sing 194 n n 
O4' H4O1 LMT sing 195 n n 
O6B H6B LMT sing 196 n n 
C1' C2' LMT sing 197 n n 
C1' O1' LMT sing 198 n n 
C1' O5' LMT sing 199 n n 
C1' H1' LMT sing 200 n n 
C2' C3' LMT sing 201 n n 
C2' O2' LMT sing 202 n n 
C2' H2' LMT sing 203 n n 
C3' C4' LMT sing 204 n n 
C3' O3' LMT sing 205 n n 
C3' H3' LMT sing 206 n n 
C4' C5' LMT sing 207 n n 
C4' H4' LMT sing 208 n n 
C5' C6' LMT sing 209 n n 
C5' O5' LMT sing 210 n n 
C5' H5' LMT sing 211 n n 
C6' O6' LMT sing 212 n n 
C6' H6D LMT sing 213 n n 
C6' H6E LMT sing 214 n n 
O1' C1 LMT sing 215 n n 
O2' H2O2 LMT sing 216 n n 
O3' H3O2 LMT sing 217 n n 
O6' H6' LMT sing 218 n n 
C1 C2 LMT sing 219 n n 
C1 H12 LMT sing 220 n n 
C1 H11 LMT sing 221 n n 
C2 C3 LMT sing 222 n n 
C2 H22 LMT sing 223 n n 
C2 H21 LMT sing 224 n n 
C3 C4 LMT sing 225 n n 
C3 H32 LMT sing 226 n n 
C3 H31 LMT sing 227 n n 
C4 C5 LMT sing 228 n n 
C4 H42 LMT sing 229 n n 
C4 H41 LMT sing 230 n n 
C5 C6 LMT sing 231 n n 
C5 H52 LMT sing 232 n n 
C5 H51 LMT sing 233 n n 
C6 C7 LMT sing 234 n n 
C6 H62 LMT sing 235 n n 
C6 H61 LMT sing 236 n n 
C7 C8 LMT sing 237 n n 
C7 H72 LMT sing 238 n n 
C7 H71 LMT sing 239 n n 
C8 C9 LMT sing 240 n n 
C8 H82 LMT sing 241 n n 
C8 H81 LMT sing 242 n n 
C9 C10 LMT sing 243 n n 
C9 H92 LMT sing 244 n n 
C9 H91 LMT sing 245 n n 
C10 C11 LMT sing 246 n n 
C10 H102 LMT sing 247 n n 
C10 H101 LMT sing 248 n n 
C11 C12 LMT sing 249 n n 
C11 H112 LMT sing 250 n n 
C11 H111 LMT sing 251 n n 
C12 H123 LMT sing 252 n n 
C12 H122 LMT sing 253 n n 
C12 H121 LMT sing 254 n n 
#
_atom_sites.entry_id                     6YU3 
_atom_sites.fract_transf_matrix[1][1]    0.022584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002677 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 701 701 NA NA . 
C 2 NA A 1 702 702 NA NA . 
D 3 PHE A 1 703 601 PHE PHE . 
E 4 LMT A 1 704 801 LMT LMT . 
F 4 LMT A 1 705 901 LMT LMT . 
G 4 LMT A 1 706 1001 LMT LMT . 
H 4 LMT A 1 707 1201 LMT LMT . 
I 5 SOG A 1 708 1 SOG SOG . 
J 5 SOG A 1 709 2 SOG SOG . 
K 6 GOL A 1 710 1 GOL GOL . 
L 7 HOH A 1 801 44 HOH HOH . 
L 7 HOH A 2 802 59 HOH HOH . 
L 7 HOH A 3 803 2 HOH HOH . 
L 7 HOH A 4 804 37 HOH HOH . 
L 7 HOH A 5 805 62 HOH HOH . 
L 7 HOH A 6 806 16 HOH HOH . 
L 7 HOH A 7 807 43 HOH HOH . 
L 7 HOH A 8 808 18 HOH HOH . 
L 7 HOH A 9 809 23 HOH HOH . 
L 7 HOH A 10 810 10 HOH HOH . 
L 7 HOH A 11 811 32 HOH HOH . 
L 7 HOH A 12 812 48 HOH HOH . 
L 7 HOH A 13 813 24 HOH HOH . 
L 7 HOH A 14 814 34 HOH HOH . 
L 7 HOH A 15 815 13 HOH HOH . 
L 7 HOH A 16 816 9 HOH HOH . 
L 7 HOH A 17 817 26 HOH HOH . 
L 7 HOH A 18 818 54 HOH HOH . 
L 7 HOH A 19 819 36 HOH HOH . 
L 7 HOH A 20 820 22 HOH HOH . 
L 7 HOH A 21 821 50 HOH HOH . 
L 7 HOH A 22 822 20 HOH HOH . 
L 7 HOH A 23 823 1 HOH HOH . 
L 7 HOH A 24 824 40 HOH HOH . 
L 7 HOH A 25 825 21 HOH HOH . 
L 7 HOH A 26 826 7 HOH HOH . 
L 7 HOH A 27 827 30 HOH HOH . 
L 7 HOH A 28 828 14 HOH HOH . 
L 7 HOH A 29 829 60 HOH HOH . 
L 7 HOH A 30 830 63 HOH HOH . 
L 7 HOH A 31 831 33 HOH HOH . 
L 7 HOH A 32 832 64 HOH HOH . 
L 7 HOH A 33 833 29 HOH HOH . 
L 7 HOH A 34 834 31 HOH HOH . 
L 7 HOH A 35 835 11 HOH HOH . 
L 7 HOH A 36 836 27 HOH HOH . 
L 7 HOH A 37 837 4 HOH HOH . 
L 7 HOH A 38 838 3 HOH HOH . 
L 7 HOH A 39 839 25 HOH HOH . 
L 7 HOH A 40 840 47 HOH HOH . 
L 7 HOH A 41 841 56 HOH HOH . 
L 7 HOH A 42 842 53 HOH HOH . 
L 7 HOH A 43 843 8 HOH HOH . 
L 7 HOH A 44 844 28 HOH HOH . 
L 7 HOH A 45 845 5 HOH HOH . 
L 7 HOH A 46 846 15 HOH HOH . 
L 7 HOH A 47 847 6 HOH HOH . 
L 7 HOH A 48 848 35 HOH HOH . 
L 7 HOH A 49 849 57 HOH HOH . 
L 7 HOH A 50 850 49 HOH HOH . 
L 7 HOH A 51 851 51 HOH HOH . 
L 7 HOH A 52 852 61 HOH HOH . 
L 7 HOH A 53 853 12 HOH HOH . 
L 7 HOH A 54 854 55 HOH HOH . 
L 7 HOH A 55 855 52 HOH HOH . 
L 7 HOH A 56 856 39 HOH HOH . 
L 7 HOH A 57 857 19 HOH HOH . 
L 7 HOH A 58 858 58 HOH HOH . 
L 7 HOH A 59 859 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . E 4 29.587 40.399 112.976 1 75.56 ? C1B LMT 704 A 1 
HETATM 2 C C2B LMT . . . E 4 30.999 40.927 113.216 1 80.94 ? C2B LMT 704 A 1 
HETATM 3 C C3B LMT . . . E 4 31.55 40.566 114.546 1 76.37 ? C3B LMT 704 A 1 
HETATM 4 C C4B LMT . . . E 4 30.674 41.042 115.659 1 76.95 ? C4B LMT 704 A 1 
HETATM 5 C C5B LMT . . . E 4 29.232 40.536 115.563 1 72.34 ? C5B LMT 704 A 1 
HETATM 6 C C6B LMT . . . E 4 28.351 41.565 116.221 1 70.96 ? C6B LMT 704 A 1 
HETATM 7 O O1B LMT . . . E 4 29.66 39.243 112.232 1 76.99 ? O1B LMT 704 A 1 
HETATM 8 O O2B LMT . . . E 4 31.861 40.401 112.188 1 80.13 ? O2B LMT 704 A 1 
HETATM 9 O O3B LMT . . . E 4 32.849 41.199 114.701 1 71.2 ? O3B LMT 704 A 1 
HETATM 10 O O4' LMT . . . E 4 31.228 40.585 116.901 1 64.7 ? O4' LMT 704 A 1 
HETATM 11 O O5B LMT . . . E 4 28.715 40.222 114.204 1 71.57 ? O5B LMT 704 A 1 
HETATM 12 O O6B LMT . . . E 4 27.062 41.562 115.649 1 73.16 ? O6B LMT 704 A 1 
HETATM 13 C C1' LMT . . . E 4 28.486 35.288 112.316 1 68.18 ? C1' LMT 704 A 1 
HETATM 14 C C2' LMT . . . E 4 27.508 36.273 112.936 1 69.53 ? C2' LMT 704 A 1 
HETATM 15 C C3' LMT . . . E 4 27.877 37.671 112.56 1 68.58 ? C3' LMT 704 A 1 
HETATM 16 C C4' LMT . . . E 4 29.29 38.034 112.928 1 67.52 ? C4' LMT 704 A 1 
HETATM 17 C C5' LMT . . . E 4 30.308 36.956 112.528 1 67.28 ? C5' LMT 704 A 1 
HETATM 18 C C6' LMT . . . E 4 31.592 37.166 113.254 1 69.35 ? C6' LMT 704 A 1 
HETATM 19 O O1' LMT . . . E 4 28.179 33.985 112.632 1 67.14 ? O1' LMT 704 A 1 
HETATM 20 O O2' LMT . . . E 4 26.182 35.994 112.463 1 71.23 ? O2' LMT 704 A 1 
HETATM 21 O O3' LMT . . . E 4 26.946 38.586 113.201 1 67.35 ? O3' LMT 704 A 1 
HETATM 22 O O5' LMT . . . E 4 29.871 35.566 112.798 1 67.23 ? O5' LMT 704 A 1 
HETATM 23 O O6' LMT . . . E 4 32.381 36.025 113.117 1 60.46 ? O6' LMT 704 A 1 
HETATM 24 C C1 LMT . . . E 4 29.264 33.106 112.334 1 62.38 ? C1 LMT 704 A 1 
HETATM 25 C C2 LMT . . . E 4 28.851 31.62 112.497 1 55.37 ? C2 LMT 704 A 1 
HETATM 26 C C3 LMT . . . E 4 29.586 30.795 111.407 1 51.38 ? C3 LMT 704 A 1 
HETATM 27 C C4 LMT . . . E 4 29.22 29.292 111.554 1 55.1 ? C4 LMT 704 A 1 
HETATM 28 C C5 LMT . . . E 4 30.48 28.514 112.004 1 53.21 ? C5 LMT 704 A 1 
HETATM 29 C C6 LMT . . . E 4 30.411 27.063 111.452 1 50.01 ? C6 LMT 704 A 1 
HETATM 30 C C7 LMT . . . E 4 31.692 26.299 111.867 1 56.31 ? C7 LMT 704 A 1 
HETATM 31 C C8 LMT . . . E 4 31.599 25.901 113.361 1 55.93 ? C8 LMT 704 A 1 
HETATM 32 C C9 LMT . . . E 4 32.627 24.792 113.678 1 63.66 ? C9 LMT 704 A 1 
HETATM 33 C C10 LMT . . . E 4 33.973 25.416 114.1 1 62.32 ? C10 LMT 704 A 1 
HETATM 34 C C11 LMT . . . E 4 34.558 24.628 115.284 1 57 ? C11 LMT 704 A 1 
HETATM 35 C C12 LMT . . . E 4 35.838 25.319 115.768 1 45.98 ? C12 LMT 704 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#